Clone GH13461 Report

Search the DGRC for GH13461

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:134
Well:61
Vector:pOT2
Associated Gene/TranscriptTreh-RA
Protein status:GH13461.pep: gold
Preliminary Size:3201
Sequenced Size:2787

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9364 2001-01-01 Release 2 assignment
CG9364 2001-07-04 Blastp of sequenced clone
CG9364 2003-01-01 Sim4 clustering to Release 3
Treh 2008-04-29 Release 5.5 accounting
Treh 2008-08-15 Release 5.9 accounting
Treh 2008-12-18 5.12 accounting

Clone Sequence Records

GH13461.complete Sequence

2787 bp (2787 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051466

> GH13461.complete
TAAGTTGCACGGTCGTGATTAGTCTCGTGGCGCTGCTCGAAGGCAAAAGA
AGCAACCAGGCGTTACGGTGGATCGAAATTCGAATAATAATACGGCAGTG
ATCAAATCGAGTGATAAATGCAAACAACGCATATTGACGTGATAAACAAG
TGGCAAGAATAAACAAAACATTTTGGTCAAATTGAAATCTTCGCTTCGCG
CCCGCAACCTTGCGAGAATCTCAACATATTTTGCGACATCAGGAAACAAC
AGTCTTTGTCGCAATATGGCCTCTCCAGCGAATCCATCGAGCAATCACAA
AATGAACGGAAATGGTAAAATCTACTGCGAGGGCAATCTGCTGCACACCA
TCCAAACGGCAGTGCCCAAACTATTTGCGGATTCGAAAACGTTTGTGGAC
ATGAAGCTGAACAATTCGCCCGACAAGACCCTCGAGGACTTTAATGCCAT
GATGGAGGCCAAGAATCAGACGCCAAGCAGTGAGGATCTCAAGCAGTTTG
TCGATAAGTACTTCAGTGCACCGGGCACCGAGCTTGAGAAATGGACGCCC
ACCGACTGGAAGGAGAATCCCAGTTTCCTCGACCTGATCTCCGACCCAGA
TCTGAAGCAATGGGGCGTCGAGCTGAATAGCATTTGGAAGGACTTGGGAC
GCAAAATGAAGGACGAGGTGTCAAAGAATCCCGAATACTACTCAATCATT
CCCGTGCCAAATCCAGTGATCGTGCCCGGCGGTCGTTTCATTGAGTTCTA
CTACTGGGACTCCTACTGGATCATCCGTGGACTTCTCTACAGCCAGATGT
TTGACACCGCGCGCGGCATGATTGAGAACTTCTTTTCCATTGTCAATCGG
TTCGGTTTTATTCCAAACGGCGGTCGAGTCTACTACCACGGTCGCTCCCA
GCCGCCACTTCTAACCGGTATGGTCAAGTCGTACGTGGACTTCACCAACG
ATGACAAGTTCGCCATCGATGCCCTGGACACGCTGGAGCACGAGTTCGAG
TTCTTTGTGAACAACCACAATGTCACGGTGAAGAATCACAGCCTGTGTGT
GTACCGCGATTCGTCGTCCGGACCGCGACCAGAATCCTACCGAGAGGATG
TGGAGACCGGCGAGGAGTTCCCCACGGATGAGGCCAAGGAACTGCATTAC
AGTGAACTCAAGGCAGGCGCCGAATCGGGCATGGACTTTAGCTCGCGCTG
GTTCATCTCACCGACTGGAACCAATGATGGCAACCGGAGCGCTCTGAGCA
CCACCTCCATTGTGCCCGTCGACCTGAATGCCTATCTCTACTGGAACGCC
AAGTTGATTGCCGAGTTCCATTCCAAAGCGGGCAACACCAAAAAGGTCAC
CGAATACGAGACCAAGGCCGAGAAACTCCTTCTGGGTATCCAAGAAGTTT
TGTGGAACGAGGAGGCCGGTGTCTGGTTGGACTACGATATGATTAACCAG
AAGCCTCGCGATTACTACACGCCCACCAATCTATCTCCACTGTGGGTGAA
GGCCTTCAACATTTCGGAGTCCGAAAAGATATCGGCTTCGGTTATGGCCT
ACATTGAGAGGAACAAGCTGGACAGCTTCCCTGGCGGAGTTCCCAACACG
CTGAGCTACACCGGAGAACAGTGGGATGCCCCCAATGTGTGGGCACCGAT
GCAGTACATCCTGGTCGAGGGCCTAAACAACCTGAACACTCCCGAGGCCA
AGAATATGTCACTGAAGTGGGCCACCAGGTGGGTGAAGACAAACTTTGCG
GCGTTTAGCAAGGACAGGCACATGTACGAGAAGTACAACGCCGATGAGTT
CGGAGTTGGAGGCGGCGGTGGCGAGTACGAGGTACAGACTGGATTCGGTT
GGTCCAACGGTGTGATCATCGAGTGGCTGAGCAAGCACGGGCGCGACATT
TCCATTGGATCCGGTTGTGGCTGCCTAGCAGGTGAAAAGCGGCAGTAGAA
AGAATCTGTAGCCAGGCCAGAACGCAATCCATCAGACATCATTGTCAGCA
TCATCACAGGCTCGAAGCCAAAGCTTATTCAAAAAATTGTATTTAGATAT
TTGTATATTATTAAGGCTCCAATCAGAAGCGCTCATCAACTGCTCATCCT
TAGGCTAAGAAAATGCTGTCTCTCTCGCTCTGCGCAATCTTTATACCTTT
AAAAGCCGCTGTCTATAACCAATATCTGTACCGCGAACCATCGACATCTC
GAGCCAAGCACCACGAACCACAGCACCACAGTTACAGCACCGCCAGGAAT
CAAGATCTGAAGTCCGCCATCCGTCGAGCATCTGTGTACTGTCTGTTGTC
CATGTAGTAAACCACGTCCAGTCCACGTTTGCACACTCGTGTGACTTGTC
CAAATTCAAGAAATAAGAACGCAAAGAACGCTATCTATCAAGTTGAGGAT
TCACGAGTAATCGTATGATGGGCATCGTGGGCGTGGCAGCTGTCACTATA
GTTGCTCTGATAGCAGGTCGTGTTCTATGGTGAGACAATGTGTGCCAAAA
CAAGACGTAATTGCTACTCAAGTAGTGTGATTCCCCCCTCCGTGTTTGTG
CGTGTGTTGTGAAGTCTGTAGTTGCTAACGTTTTTCGTTGAGTGCGGAGA
TTGCAGTATTAGTTTATCATTATTTGGTAGTTGAAGTGAGAGTTGTATAT
ACTGAATTTATATGGGCATGCCCGAAATTGTTATTACGTTTTAATATTTA
GCAAATACCTATACCAATCCTAGCTCCTCGCAACCAAATGAAGACACAAA
TACAATTGTTAACAATAAAAAAAAAAAAAAAAAAAAA

GH13461.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-RA 3109 Treh-RA 293..3060 1..2768 13840 100 Plus
Treh-RD 3022 Treh-RD 220..2987 1..2768 13840 100 Plus
Treh-RE 3077 Treh-RE 261..3028 1..2768 13840 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16971897..16973174 506..1783 6300 99.5 Plus
chr2R 21145070 chr2R 16973237..16973865 1782..2410 3085 99.4 Plus
chr2R 21145070 chr2R 16963302..16963620 1..315 1470 98.1 Plus
chr2R 21145070 chr2R 16974385..16974668 2483..2766 1390 99.3 Plus
chr2R 21145070 chr2R 16971647..16971837 315..505 940 99.5 Plus
chr2R 21145070 chr2R 16974230..16974307 2407..2484 390 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:49:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21085448..21086725 506..1783 6390 100 Plus
2R 25286936 2R 21086788..21087416 1782..2410 3145 100 Plus
2R 25286936 2R 21076825..21077139 1..315 1575 100 Plus
2R 25286936 2R 21087936..21088221 2483..2768 1430 100 Plus
2R 25286936 2R 21085197..21085387 315..505 955 100 Plus
2R 25286936 2R 21087781..21087858 2407..2484 390 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21086647..21087924 506..1783 6390 100 Plus
2R 25260384 2R 21087987..21088615 1782..2410 3145 100 Plus
2R 25260384 2R 21078024..21078338 1..315 1575 100 Plus
2R 25260384 2R 21089135..21089420 2483..2768 1430 100 Plus
2R 25260384 2R 21086396..21086586 315..505 955 100 Plus
2R 25260384 2R 21088980..21089057 2407..2484 390 100 Plus
Blast to na_te.dros performed on 2019-03-16 17:14:49 has no hits.

GH13461.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:15:43 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16963302..16963620 1..315 98 -> Plus
chr2R 16971648..16971837 316..505 99 -> Plus
chr2R 16971897..16973174 506..1783 99 -> Plus
chr2R 16973239..16973861 1784..2406 99 -> Plus
chr2R 16974230..16974307 2407..2484 100 -> Plus
chr2R 16974387..16974668 2485..2766 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:44:05 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 1..1683 266..1948 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:07 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 1..1683 266..1948 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:53:46 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 1..1683 266..1948 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:19 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 1..1683 266..1948 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:13 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 1..1683 266..1948 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:04 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 231..2996 1..2766 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:07 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 231..2996 1..2766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:53:46 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 220..2985 1..2766 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:19 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 231..2996 1..2766 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:13 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 220..2985 1..2766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:43 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21076825..21077139 1..315 100 -> Plus
2R 21085198..21085387 316..505 100 -> Plus
2R 21085448..21086725 506..1783 100 -> Plus
2R 21086790..21087412 1784..2406 100 -> Plus
2R 21087781..21087858 2407..2484 100 -> Plus
2R 21087938..21088219 2485..2766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:43 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21076825..21077139 1..315 100 -> Plus
2R 21085198..21085387 316..505 100 -> Plus
2R 21085448..21086725 506..1783 100 -> Plus
2R 21086790..21087412 1784..2406 100 -> Plus
2R 21087781..21087858 2407..2484 100 -> Plus
2R 21087938..21088219 2485..2766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:43 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21076825..21077139 1..315 100 -> Plus
2R 21085198..21085387 316..505 100 -> Plus
2R 21085448..21086725 506..1783 100 -> Plus
2R 21086790..21087412 1784..2406 100 -> Plus
2R 21087781..21087858 2407..2484 100 -> Plus
2R 21087938..21088219 2485..2766 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:53:46 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16972703..16972892 316..505 100 -> Plus
arm_2R 16964330..16964644 1..315 100 -> Plus
arm_2R 16972953..16974230 506..1783 100 -> Plus
arm_2R 16974295..16974917 1784..2406 100 -> Plus
arm_2R 16975286..16975363 2407..2484 100 -> Plus
arm_2R 16975443..16975724 2485..2766 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:11 Download gff for GH13461.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21078024..21078338 1..315 100 -> Plus
2R 21086397..21086586 316..505 100 -> Plus
2R 21086647..21087924 506..1783 100 -> Plus
2R 21087989..21088611 1784..2406 100 -> Plus
2R 21088980..21089057 2407..2484 100 -> Plus
2R 21089137..21089418 2485..2766 100   Plus

GH13461.pep Sequence

Translation from 265 to 1947

> GH13461.pep
MASPANPSSNHKMNGNGKIYCEGNLLHTIQTAVPKLFADSKTFVDMKLNN
SPDKTLEDFNAMMEAKNQTPSSEDLKQFVDKYFSAPGTELEKWTPTDWKE
NPSFLDLISDPDLKQWGVELNSIWKDLGRKMKDEVSKNPEYYSIIPVPNP
VIVPGGRFIEFYYWDSYWIIRGLLYSQMFDTARGMIENFFSIVNRFGFIP
NGGRVYYHGRSQPPLLTGMVKSYVDFTNDDKFAIDALDTLEHEFEFFVNN
HNVTVKNHSLCVYRDSSSGPRPESYREDVETGEEFPTDEAKELHYSELKA
GAESGMDFSSRWFISPTGTNDGNRSALSTTSIVPVDLNAYLYWNAKLIAE
FHSKAGNTKKVTEYETKAEKLLLGIQEVLWNEEAGVWLDYDMINQKPRDY
YTPTNLSPLWVKAFNISESEKISASVMAYIERNKLDSFPGGVPNTLSYTG
EQWDAPNVWAPMQYILVEGLNNLNTPEAKNMSLKWATRWVKTNFAAFSKD
RHMYEKYNADEFGVGGGGGEYEVQTGFGWSNGVIIEWLSKHGRDISIGSG
CGCLAGEKRQ*

GH13461.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11930-PA 597 GF11930-PA 51..581 19..551 2139 75.8 Plus
Dana\GF13595-PA 1239 GF13595-PA 7..546 8..547 1454 46.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22083-PA 570 GG22083-PA 1..546 1..546 2789 96.2 Plus
Dere\GG20601-PA 1035 GG20601-PA 16..547 16..548 1487 48.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21428-PA 594 GH21428-PA 56..583 18..547 2056 72.6 Plus
Dgri\GH21235-PA 807 GH21235-PA 13..557 11..553 1562 51.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-PG 560 CG9364-PG 1..560 1..560 3029 100 Plus
Treh-PA 560 CG9364-PA 1..560 1..560 3029 100 Plus
Treh-PD 560 CG9364-PD 1..560 1..560 3029 100 Plus
Treh-PE 560 CG9364-PE 1..560 1..560 3029 100 Plus
Treh-PF 596 CG9364-PF 54..596 18..560 2936 100 Plus
Treh-PC 596 CG9364-PC 54..596 18..560 2936 100 Plus
Treh-PB 515 CG9364-PB 1..515 46..560 2789 100 Plus
CG6262-PA 1042 CG6262-PA 16..546 16..547 1479 49.7 Plus
CG6262-PB 867 CG6262-PB 1..371 178..547 1039 49.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20651-PA 544 GI20651-PA 1..541 13..557 2095 71.7 Plus
Dmoj\GI20520-PA 1123 GI20520-PA 14..553 11..552 1548 52.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10148-PA 131 GL10148-PA 1..78 1..80 278 66.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25091-PA 557 GA25091-PA 1..557 1..560 2242 76.6 Plus
Dpse\GA25091-PB 589 GA25091-PB 50..589 18..560 2182 77.2 Plus
Dpse\GA24461-PA 752 GA24461-PA 16..557 15..553 1647 55 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21693-PA 1046 GM21693-PA 16..547 16..548 1501 49.1 Plus
Dsec\GM15801-PA 276 GM15801-PA 1..265 1..264 1336 93.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11560-PA 596 GD11560-PA 54..596 18..560 2846 97.1 Plus
Dsim\GD11189-PA 1047 GD11189-PA 16..547 16..548 1493 49.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20400-PA 589 GJ20400-PA 50..589 18..560 2077 71.5 Plus
Dvir\GJ22372-PA 1091 GJ22372-PA 14..547 11..546 1666 55.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23271-PA 585 GK23271-PA 44..585 18..560 2093 74.1 Plus
Dwil\GK21695-PA 695 GK21695-PA 18..549 15..547 1561 53.6 Plus
Dwil\GK21696-PA 823 GK21696-PA 11..549 7..547 1510 50.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12164-PA 562 GE12164-PA 1..547 1..546 2783 96.2 Plus
Dyak\GE11788-PA 1030 GE11788-PA 14..545 16..548 1501 50 Plus

GH13461.hyp Sequence

Translation from 265 to 1947

> GH13461.hyp
MASPANPSSNHKMNGNGKIYCEGNLLHTIQTAVPKLFADSKTFVDMKLNN
SPDKTLEDFNAMMEAKNQTPSSEDLKQFVDKYFSAPGTELEKWTPTDWKE
NPSFLDLISDPDLKQWGVELNSIWKDLGRKMKDEVSKNPEYYSIIPVPNP
VIVPGGRFIEFYYWDSYWIIRGLLYSQMFDTARGMIENFFSIVNRFGFIP
NGGRVYYHGRSQPPLLTGMVKSYVDFTNDDKFAIDALDTLEHEFEFFVNN
HNVTVKNHSLCVYRDSSSGPRPESYREDVETGEEFPTDEAKELHYSELKA
GAESGMDFSSRWFISPTGTNDGNRSALSTTSIVPVDLNAYLYWNAKLIAE
FHSKAGNTKKVTEYETKAEKLLLGIQEVLWNEEAGVWLDYDMINQKPRDY
YTPTNLSPLWVKAFNISESEKISASVMAYIERNKLDSFPGGVPNTLSYTG
EQWDAPNVWAPMQYILVEGLNNLNTPEAKNMSLKWATRWVKTNFAAFSKD
RHMYEKYNADEFGVGGGGGEYEVQTGFGWSNGVIIEWLSKHGRDISIGSG
CGCLAGEKRQ*

GH13461.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-PG 560 CG9364-PG 1..560 1..560 3029 100 Plus
Treh-PA 560 CG9364-PA 1..560 1..560 3029 100 Plus
Treh-PD 560 CG9364-PD 1..560 1..560 3029 100 Plus
Treh-PE 560 CG9364-PE 1..560 1..560 3029 100 Plus
Treh-PF 596 CG9364-PF 54..596 18..560 2936 100 Plus