Clone GH13575 Report

Search the DGRC for GH13575

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:135
Well:75
Vector:pOT2
Associated Gene/TranscriptPgi-RA
Protein status:GH13575.pep: gold
Preliminary Size:2466
Sequenced Size:2469

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8251 2001-01-01 Release 2 assignment
CG8251 2001-07-04 Blastp of sequenced clone
CG8251 2003-01-01 Sim4 clustering to Release 3
Pgi 2008-04-29 Release 5.5 accounting
Pgi 2008-08-15 Release 5.9 accounting
Pgi 2008-12-18 5.12 accounting

Clone Sequence Records

GH13575.complete Sequence

2469 bp (2469 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051468

> GH13575.complete
TCGTTTTGAAAATTTCAGTTTATGTCCTTTTGCCTACCGGTGCAGACGAT
CTAGGAGTAGGAAGTTCTCAGTTCATCTCCACGCGGCCACACACAGTAAA
TTCGCACACACTGCAAACCGATCGGCACATTAAAACAAGAGCGCGGCCGA
CGTGGCAACACTCGCTTGTTTTTCATTTGACATTGAAAGGTGCTCGCGAA
TTCCAGAAAGGACGTTGGAAAATCGGCAGCCGCTCAGTCAGTACCTATCA
AAAGCAAACACGGCGAAGTTGTGGTGCGGTGCTCTGGAGATTTGCCGGAG
CCAGATAATAGGAACTACCCGACGCCTAAGCAGCCGGATCCGCTATTATA
AGTGAAGTGTCGCGAGCGGTCGAAGCAGTTCGCCTGTGCTCTCTTCTCCG
TGTGCTACTAATTTGCATCGAGTGCTAAATAGTCCTCCCTTGCCCTTCTA
CTCCGCATCCGCCTGCTGTTCCTGCTTGGGATAACTGAAGTAAGATGGCC
GGCCCACTTCCTCCGCTCAACCAGGAGGCAGCGTTCCAGAAGCTGCAGGA
GTACTACGACTCCAAGGGCAAGGACCTGAACATCAAGGACCTGTTCGTGA
AGGATTCCAAGAGATTCTCAAAATACAGCCTGCGCCTGCACACCCAGAAC
GATGGCGAGATACTGCTGGACTACTCGAAGAACCGTATCAATGACGAGGT
CTGGGATCTGCTCCTCACCCTGGCCAAGGTGCGCCGCGTTAACGCCGCGC
GGGACGCCATGTTCTCCGGCCAGCACATTAACATCACGGAGAACCGCGCC
GTCCTCCACACGGCCCTGCGCAACCGCGGCACGGATCCCGTCCTGGTGGA
CGACAAGGACGTGATGCCCGATGTGCGCGCCGAACTGGCCCACATGAAGG
AGTTCACCAACATGGTCATCTCCGGCGTGTGGCGCGGCTGCACCGGCAAA
CAGATCACCGACGTGGTCAACATCGGCATCGGTGGCTCCGATCTGGGCCC
GCTGATGGTCACCGAAGCGCTGAAGCCCTACGGCAAGGGCCTTCACTCCC
ACTTTGTGTCGAACATCGATGGCACTCATCTGGCCGAGGTCCTCAAGAAG
GTCAACTACGAGACCACCCTCTTCATTGTCGCCTCAAAAACTTTCACCAC
CCAGGAGACCATTACGAACGCCACCTCCGCCAAGACCTGGCTCCTGGAGC
ATTCCAAGGAGCCTGAGTCCGTGGCCAAGCATTTTGTGGCCCTGTCGACC
AACAAGGAAAAGGTCACCGAATTCGGCATTGACAGCACCAACATGTTCGG
TTTTTGGGATTGGGTGGGCGGTCGCTACTCCCTGTGGTCGGCCATTGGAC
TGTCAATCTGTCTGTCCATTGGCTTTGAGAACTTTGAGCAACTGCTGGAT
GGAGCTCACTTCATGGACAACCATTTCAAGACGACACCATTCGAGAAGAA
TGCTCCTGTTATCCTGGCGTTGCTAGGCGTTTGGTACTCCAACTTCTTCA
AGGCGGAAACACATGCCCTCCTTCCCTACGATCAGTACTTGCACCGGTTC
GCCGCCTACTTCCAGCAGGGCGATATGGAGAGCAACGGCAAGTTCGTCAG
CAAGTCGGGCAAACCCGTCAAGTACAGCACTGGTCCGATCGTGTGGGGCG
AGCCTGGCACCAATGGCCAGCACGCCTTCTACCAGCTCATCCACCAGGGC
ACCCGCCTGATCCCCTGCGATTTCATCGCTCCCGCCCAGACACACAATCC
CATTGCCGGCGGCAAGCACCACAAGATTCTGCTATCGAATTTCCTTGCCC
AGACGGAGGCTTTAATGGCCGGAAAGACGGTCGACGAGGCCAGGACCGAG
CTGTCCAAGGCTGGCCTGTGCGGCAACGAGCTGGATAACTTGTTGCCCCA
CAAGGTGTTCGTCGGCAACCGGCCCACAAACTCGATTGTGGTGAAGAAGG
TTTCACCTTTCACCCTAGGCGCGTTGATTGCGCTGTACGAGCACAAGATC
TTCGTTCAGGGCATCATTTGGGACATCAACTCGTTCGACCAATGGGGTGT
GGAGCTGGGCAAGCAGCTGGCCAAGGCCATCGAGCCGGAGCTGGATCACT
GCAACGAGGTCTCCACGCACGACAGTTCCACGAACGGTCTAATTAACTTC
ATCAAAGCCAATTGGAAGTAATCATGTCTGGCTATTTGTTGCGAATTAAA
AAGAAATGTTTACACAAATGCTCTAATTGTTAGTAGTTTCTGAGCCGTTA
TTCAGTAGCCGCCGCTTATGTATACTCGAGCTACAAGCCCCCTGTTATTG
GCACATTATTCAACTGTATTTATGAACTGGATATGTTTGTTTGCTTGCGT
ATCGATGAAATCTCGTGTCGGAATTAGACCAACAATTGGCTCTCACTATT
CGTTGTTGCACGTAGTTTAAAACCGTAAATAAAAATTTATGAATTCGATG
TAAAAAAAAAAAAAAAAAA

GH13575.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Pgi-RA 2680 Pgi-RA 196..2650 1..2455 12275 100 Plus
Pgi.b 2577 Pgi.b 196..2362 1..2167 10835 100 Plus
Pgi.a 2436 Pgi.a 414..2436 429..2451 10100 99.9 Plus
Pgi.a 2436 Pgi.a 67..417 1..351 1755 100 Plus
Pgi.b 2577 Pgi.b 2363..2577 2237..2451 1075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4800984..4801611 628..1 3140 100 Minus
chr2R 21145070 chr2R 4800156..4800741 1211..626 2930 100 Minus
chr2R 21145070 chr2R 4798977..4799505 1980..1452 2645 100 Minus
chr2R 21145070 chr2R 4798451..4798922 2451..1980 2360 100 Minus
chr2R 21145070 chr2R 4799567..4799809 1452..1210 1215 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:49:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8913433..8914060 628..1 3140 100 Minus
2R 25286936 2R 8912605..8913190 1211..626 2930 100 Minus
2R 25286936 2R 8911426..8911954 1980..1452 2645 100 Minus
2R 25286936 2R 8910896..8911371 2455..1980 2380 100 Minus
2R 25286936 2R 8912016..8912258 1452..1210 1215 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8914632..8915259 628..1 3140 100 Minus
2R 25260384 2R 8913804..8914389 1211..626 2930 100 Minus
2R 25260384 2R 8912625..8913153 1980..1452 2645 100 Minus
2R 25260384 2R 8912095..8912570 2455..1980 2380 100 Minus
2R 25260384 2R 8913215..8913457 1452..1210 1215 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:13:56 has no hits.

GH13575.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:15:11 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4798451..4798921 1981..2451 100 <- Minus
chr2R 4798977..4799505 1452..1980 100 <- Minus
chr2R 4799568..4799807 1212..1451 100 <- Minus
chr2R 4800156..4800738 629..1211 100 <- Minus
chr2R 4800984..4801611 1..628 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:35 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
Pgi-RC 1..1677 495..2171 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:11 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
Pgi-RC 1..1677 495..2171 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:29:03 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
Pgi-RA 1..1677 495..2171 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:23 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
Pgi-RC 1..1677 495..2171 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:29:22 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
Pgi-RA 1..1677 495..2171 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:32 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
Pgi-RA 67..2515 1..2449 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:10 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
Pgi-RA 67..2515 1..2449 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:29:03 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
Pgi-RA 10..2460 1..2451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:23 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
Pgi-RA 67..2515 1..2449 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:29:22 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
Pgi-RA 10..2460 1..2451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:11 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8910900..8911370 1981..2451 100 <- Minus
2R 8911426..8911954 1452..1980 100 <- Minus
2R 8912017..8912256 1212..1451 100 <- Minus
2R 8912605..8913187 629..1211 100 <- Minus
2R 8913433..8914060 1..628 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:11 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8910900..8911370 1981..2451 100 <- Minus
2R 8911426..8911954 1452..1980 100 <- Minus
2R 8912017..8912256 1212..1451 100 <- Minus
2R 8912605..8913187 629..1211 100 <- Minus
2R 8913433..8914060 1..628 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:11 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8910900..8911370 1981..2451 100 <- Minus
2R 8911426..8911954 1452..1980 100 <- Minus
2R 8912017..8912256 1212..1451 100 <- Minus
2R 8912605..8913187 629..1211 100 <- Minus
2R 8913433..8914060 1..628 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:29:03 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4798405..4798875 1981..2451 100 <- Minus
arm_2R 4798931..4799459 1452..1980 100 <- Minus
arm_2R 4799522..4799761 1212..1451 100 <- Minus
arm_2R 4800110..4800692 629..1211 100 <- Minus
arm_2R 4800938..4801565 1..628 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:15 Download gff for GH13575.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8912099..8912569 1981..2451 100 <- Minus
2R 8912625..8913153 1452..1980 100 <- Minus
2R 8913216..8913455 1212..1451 100 <- Minus
2R 8913804..8914386 629..1211 100 <- Minus
2R 8914632..8915259 1..628 100   Minus

GH13575.pep Sequence

Translation from 494 to 2170

> GH13575.pep
MAGPLPPLNQEAAFQKLQEYYDSKGKDLNIKDLFVKDSKRFSKYSLRLHT
QNDGEILLDYSKNRINDEVWDLLLTLAKVRRVNAARDAMFSGQHINITEN
RAVLHTALRNRGTDPVLVDDKDVMPDVRAELAHMKEFTNMVISGVWRGCT
GKQITDVVNIGIGGSDLGPLMVTEALKPYGKGLHSHFVSNIDGTHLAEVL
KKVNYETTLFIVASKTFTTQETITNATSAKTWLLEHSKEPESVAKHFVAL
STNKEKVTEFGIDSTNMFGFWDWVGGRYSLWSAIGLSICLSIGFENFEQL
LDGAHFMDNHFKTTPFEKNAPVILALLGVWYSNFFKAETHALLPYDQYLH
RFAAYFQQGDMESNGKFVSKSGKPVKYSTGPIVWGEPGTNGQHAFYQLIH
QGTRLIPCDFIAPAQTHNPIAGGKHHKILLSNFLAQTEALMAGKTVDEAR
TELSKAGLCGNELDNLLPHKVFVGNRPTNSIVVKKVSPFTLGALIALYEH
KIFVQGIIWDINSFDQWGVELGKQLAKAIEPELDHCNEVSTHDSSTNGLI
NFIKANWK*

GH13575.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12560-PA 558 GF12560-PA 1..558 1..558 2848 93.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10610-PA 558 GG10610-PA 1..558 1..558 2953 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22686-PA 558 GH22686-PA 1..558 1..558 2700 88.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pgi-PC 558 CG8251-PC 1..558 1..558 2950 100 Plus
Pgi-PB 558 CG8251-PB 1..558 1..558 2950 100 Plus
Pgi-PA 558 CG8251-PA 1..558 1..558 2950 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20614-PA 558 GI20614-PA 1..558 1..558 2713 89.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10407-PA 559 GL10407-PA 1..559 1..558 2712 89.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20931-PA 559 GA20931-PA 1..559 1..558 2712 89.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20655-PA 558 GM20655-PA 1..558 1..558 2996 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21054-PA 558 GJ21054-PA 1..558 1..558 2715 90.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21948-PA 558 GK21948-PA 1..558 1..558 2747 90.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Pgi-PA 558 GE22729-PA 1..558 1..558 2960 98.2 Plus

GH13575.hyp Sequence

Translation from 494 to 2170

> GH13575.hyp
MAGPLPPLNQEAAFQKLQEYYDSKGKDLNIKDLFVKDSKRFSKYSLRLHT
QNDGEILLDYSKNRINDEVWDLLLTLAKVRRVNAARDAMFSGQHINITEN
RAVLHTALRNRGTDPVLVDDKDVMPDVRAELAHMKEFTNMVISGVWRGCT
GKQITDVVNIGIGGSDLGPLMVTEALKPYGKGLHSHFVSNIDGTHLAEVL
KKVNYETTLFIVASKTFTTQETITNATSAKTWLLEHSKEPESVAKHFVAL
STNKEKVTEFGIDSTNMFGFWDWVGGRYSLWSAIGLSICLSIGFENFEQL
LDGAHFMDNHFKTTPFEKNAPVILALLGVWYSNFFKAETHALLPYDQYLH
RFAAYFQQGDMESNGKFVSKSGKPVKYSTGPIVWGEPGTNGQHAFYQLIH
QGTRLIPCDFIAPAQTHNPIAGGKHHKILLSNFLAQTEALMAGKTVDEAR
TELSKAGLCGNELDNLLPHKVFVGNRPTNSIVVKKVSPFTLGALIALYEH
KIFVQGIIWDINSFDQWGVELGKQLAKAIEPELDHCNEVSTHDSSTNGLI
NFIKANWK*

GH13575.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pgi-PC 558 CG8251-PC 1..558 1..558 2950 100 Plus
Pgi-PB 558 CG8251-PB 1..558 1..558 2950 100 Plus
Pgi-PA 558 CG8251-PA 1..558 1..558 2950 100 Plus