Clone GH13725 Report

Search the DGRC for GH13725

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:137
Well:25
Vector:pOT2
Associated Gene/TranscriptTcp-1zeta-RA
Protein status:GH13725.pep: gold
Preliminary Size:1919
Sequenced Size:1921

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8231 2001-07-04 Blastp of sequenced clone
CG8231 2003-01-01 Sim4 clustering to Release 3
Tcp-1zeta 2008-04-29 Release 5.5 accounting
Tcp-1zeta 2008-08-15 Release 5.9 accounting
Tcp-1zeta 2008-12-18 5.12 accounting

Clone Sequence Records

GH13725.complete Sequence

1921 bp (1921 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051470

> GH13725.complete
ATTTCTTCGATTCGCCTAACTTTAAGCGTGCTTGGATTTGTGCCGATTCC
TATTGATTTATTTTGCCGAGCTAAGAAAATCTCTGTTTAATTGCGACACG
CGATGGCTTCGATTAGCTTGCTGAACCCCAAGGCCGAGTTTGCCCGCGCC
GCCCAGGCTCTGGCCATCAATATCAGTGCCGCCAAGGGACTGCAGGATGT
GATGCGCACCAATTTGGGACCCAAGGGCACCGTTAAGATGTTGGTTTCTG
GCGCCGGCGACATCAAGATCACCAAGGATGGCAATGTCCTGCTGCACGAA
ATGCAGATCCAACATCCGACTGCCTCTATGATTGCCAGGGCCAGCACGGC
CCAGGATGATTCCACCGGCGATGGAACCACCACCACTGTGATGCTTATTG
GCGAGCTCCTGAAGCAGGCCGATATCTATCTGTCCGAGGGACTGCATCCT
CGCATCATGACCGATGGATTCGAGAAGGCACGCGACAAGGCATTGGAGGT
GCTCGACCAGGTCAAGGTGCCCGTGGAGATCAACAAGAAGAACCTGGTGG
AGGTGGCCAACACAAGTCTGAAGACCAAGGTGCATCCCGCCCTTGCCGAT
CTGCTTACGGACGTCTGCGTGAATGCCGTGCTGACCATTGCCAGTGCCGA
TAAGACCAAGCCCGTGGACCTCCACATGGTGGAGCTGATGGAGATGCAGC
ACAAATCCGATACCGATACACAGCTGGTGCGTGGACTAGTCATGGACCAT
GGTGCTCGCCACCCGGACATGCCGAAGCGTTTGGAGAATGCCTACATCCT
TACGGCCAATGTCTCGCTGGAGTACGAGAAGGCCGAGGTCAACTCTGGCT
TCTTCTACAAGACCGCCGAGGAGCGTGAGGCCTTTGTGCGCGCCGAGCGC
GAATTCATCGACCAGCGTGTGAAGAAGGTGATCGAATTGAAGCGCTCCGT
GTGCGATGGCACCGACAAAACCTTCGTCCTGATCAACCAGAAGGGCATCG
ACCCCATCTCGCTGGACGCCCTGGCCAAGGAGGGCATCCTGGCCTTGCGT
CGCGCCAAGCGCCGCAACATGGAGCGTCTGTCTTTGGCCTGCGGTGGCAC
TGCAATGAACTCCTTTGACGATCTGCAGGAGGAGCACTTGGGATACGCCG
GTGTGGTGTACGAGCATGTTCTGGGCGAGAACAAGTACACTTTCGTTGAG
GACTGCAAGAACCCGCTGTCCGTCACGATCCTGATCAAGGGTCCCAACAA
GCACACGATCACCCAGATCAAGGACGCCATCAGGGACGGTCTGCGTGCCA
TCAACAACACCATTGCCGATAAGGCTCTGGTGCCCGGAGCTGGAGCATTC
GAGGTGCGCGCGTACAACGAGCTGGTCGCCTTCAAGGACACCATCAAGGG
CAAGTCCCGCCTGGCAGTGCAGGCCTTTGCCGATGCCCTGCTGGTCATTC
CCAAGACGCTGGCCGTGAACAGCGGCTACGATGCCCAGGACACAATCGTC
AAGCTGACTGTTGAGGATCGCCTGAGTCCCGAACTGGTCGGCCTGGATCT
GGCCACCGGGGAGCCCATGAAGCCCGTGGATCTGGGCGTCTACGACAACT
ACATCGTTAAGAAGCAGATCCTCAACTCCTGTTCGATCATTGCCAGCAAC
CTGCTTCTCGTCGACGAGGTGATGCGTGCGGGCATGACGAGCCTCAAGGG
CTAGTCCCCATCATTTCATCCGACCCATTCAATTTAACCAAGTTAATGCA
CCGCATGCTACTCAACCCGCGTCTCTCAAAGCCACACACAACCAAAAGAA
AACTAAACACGTAAATAATTTGGAAACACATGAAATCGGAATGGTTGCGG
CTGCAAGTATTCACATTTAAAATACAATTCTAATAAATACAAAAACCAAA
CACAAAAAAAAAAAAAAAAAA

GH13725.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tcp-1zeta-RA 2138 Tcp-1zeta-RA 121..2024 1..1904 9520 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15637139..15638802 240..1903 8230 99.6 Plus
chrX 22417052 chrX 15636500..15636740 1..241 1130 97.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:49:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15747308..15748972 240..1904 8325 100 Plus
X 23542271 X 15746669..15746909 1..241 1205 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15755406..15757070 240..1904 8325 100 Plus
X 23527363 X 15754767..15755007 1..241 1205 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:43:35 has no hits.

GH13725.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:44:18 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15636500..15636738 1..239 97 -> Plus
chrX 15637139..15638802 240..1903 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:41 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 1..1602 103..1704 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:02 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 1..1602 103..1704 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:46:33 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 1..1602 103..1704 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:14 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 1..1602 103..1704 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:23 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 1..1602 103..1704 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:20 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 44..1946 1..1903 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:01 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 44..1946 1..1903 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:33 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 22..1924 1..1903 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:14 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 44..1946 1..1903 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:23 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 22..1924 1..1903 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:44:18 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
X 15746669..15746907 1..239 100 -> Plus
X 15747308..15748971 240..1903 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:44:18 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
X 15746669..15746907 1..239 100 -> Plus
X 15747308..15748971 240..1903 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:44:18 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
X 15746669..15746907 1..239 100 -> Plus
X 15747308..15748971 240..1903 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:33 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15640702..15640940 1..239 100 -> Plus
arm_X 15641341..15643004 240..1903 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:05 Download gff for GH13725.complete
Subject Subject Range Query Range Percent Splice Strand
X 15754767..15755005 1..239 100 -> Plus
X 15755406..15757069 240..1903 100   Plus

GH13725.pep Sequence

Translation from 102 to 1703

> GH13725.pep
MASISLLNPKAEFARAAQALAINISAAKGLQDVMRTNLGPKGTVKMLVSG
AGDIKITKDGNVLLHEMQIQHPTASMIARASTAQDDSTGDGTTTTVMLIG
ELLKQADIYLSEGLHPRIMTDGFEKARDKALEVLDQVKVPVEINKKNLVE
VANTSLKTKVHPALADLLTDVCVNAVLTIASADKTKPVDLHMVELMEMQH
KSDTDTQLVRGLVMDHGARHPDMPKRLENAYILTANVSLEYEKAEVNSGF
FYKTAEEREAFVRAEREFIDQRVKKVIELKRSVCDGTDKTFVLINQKGID
PISLDALAKEGILALRRAKRRNMERLSLACGGTAMNSFDDLQEEHLGYAG
VVYEHVLGENKYTFVEDCKNPLSVTILIKGPNKHTITQIKDAIRDGLRAI
NNTIADKALVPGAGAFEVRAYNELVAFKDTIKGKSRLAVQAFADALLVIP
KTLAVNSGYDAQDTIVKLTVEDRLSPELVGLDLATGEPMKPVDLGVYDNY
IVKKQILNSCSIIASNLLLVDEVMRAGMTSLKG*

GH13725.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19478-PA 532 GF19478-PA 1..532 1..533 2751 97.7 Plus
Dana\GF13619-PA 546 GF13619-PA 1..546 1..533 1835 63.9 Plus
Dana\GF15661-PA 533 GF15661-PA 30..473 23..468 582 32.5 Plus
Dana\GF12298-PA 542 GF12298-PA 34..478 19..468 560 31.2 Plus
Dana\GF17067-PA 544 GF17067-PA 14..522 8..524 544 28.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17906-PA 533 GG17906-PA 1..533 1..533 2784 98.5 Plus
Dere\GG10247-PA 533 GG10247-PA 30..473 23..468 580 32.7 Plus
Dere\GG20252-PA 542 GG20252-PA 34..478 19..468 560 31.2 Plus
Dere\GG21785-PA 544 GG21785-PA 14..454 8..460 534 29.7 Plus
Dere\GG12510-PA 557 GG12510-PA 24..535 23..525 509 25.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24158-PA 532 GH24158-PA 1..532 1..533 2610 94.7 Plus
Dgri\GH21004-PA 536 GH21004-PA 1..531 1..532 1800 64.5 Plus
Dgri\GH19719-PA 541 GH19719-PA 34..478 19..468 571 31.4 Plus
Dgri\GH11666-PA 533 GH11666-PA 30..473 23..468 559 32 Plus
Dgri\GH18159-PA 544 GH18159-PA 14..522 8..524 538 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
CCT6-PA 533 CG8231-PA 1..533 1..533 2665 100 Plus
CCT4-PA 533 CG5525-PA 30..529 23..524 591 29.5 Plus
CCT5-PA 542 CG8439-PA 34..534 19..523 587 30.6 Plus
CCT5-PB 512 CG8439-PB 8..504 23..523 583 30.6 Plus
CCT3-PD 544 CG8977-PD 14..522 8..524 557 27.8 Plus
CCT3-PC 544 CG8977-PC 14..522 8..524 557 27.8 Plus
CCT3-PB 544 CG8977-PB 14..522 8..524 557 27.8 Plus
CCT3-PA 544 CG8977-PA 14..522 8..524 557 27.8 Plus
CCT1-PA 557 CG5374-PA 24..535 23..525 543 25.9 Plus
CCT1-PB 557 CG5374-PB 24..535 23..525 543 25.9 Plus
CCT7-PA 544 CG8351-PA 5..521 4..526 532 25.8 Plus
CCT2-PA 535 CG7033-PA 8..522 4..525 527 26.5 Plus
CCT8-PA 546 CG8258-PA 27..528 18..526 473 28 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14661-PA 532 GI14661-PA 1..532 1..533 2590 93.6 Plus
Dmoj\GI20643-PA 532 GI20643-PA 1..532 1..533 1796 64.4 Plus
Dmoj\GI17110-PA 533 GI17110-PA 30..473 23..468 587 32.5 Plus
Dmoj\GI20138-PA 541 GI20138-PA 34..534 19..523 561 31 Plus
Dmoj\GI10112-PA 544 GI10112-PA 14..522 8..524 537 28 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12072-PA 532 GL12072-PA 1..532 1..533 2498 89.9 Plus
Dper\GL18351-PA 417 GL18351-PA 159..417 275..533 1347 97.3 Plus
Dper\GL18351-PA 417 GL18351-PA 1..160 1..160 801 96.9 Plus
Dper\GL19739-PA 533 GL19739-PA 30..473 23..468 561 31.8 Plus
Dper\GL11023-PA 542 GL11023-PA 34..478 19..468 556 31 Plus
Dper\GL23334-PA 557 GL23334-PA 24..535 23..525 506 25.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27623-PA 531 GA27623-PA 1..531 1..533 2710 96.2 Plus
Dpse\GA26183-PA 532 GA26183-PA 1..532 1..533 2486 89.5 Plus
Dpse\GA18950-PA 533 GA18950-PA 30..473 23..468 560 31.8 Plus
Dpse\GA21078-PA 542 GA21078-PA 34..478 19..468 556 31 Plus
Dpse\GA21448-PA 544 GA21448-PA 14..460 8..469 535 30.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22574-PA 485 GM22574-PA 1..485 1..533 2476 90.1 Plus
Dsec\GM26064-PA 533 GM26064-PA 30..473 23..468 579 32.5 Plus
Dsec\GM21339-PA 542 GM21339-PA 34..478 19..468 553 30.8 Plus
Dsec\GM15181-PA 544 GM15181-PA 14..454 8..460 530 29.9 Plus
Dsec\GM13717-PA 533 GM13717-PA 17..521 10..526 506 27.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22106-PA 516 GD22106-PA 30..456 23..468 534 31.6 Plus
Dsim\GD19118-PA 544 GD19118-PA 14..454 8..460 530 29.9 Plus
Dsim\T-cp1-PA 557 GD18453-PA 24..535 23..525 507 25.9 Plus
Dsim\GD10130-PA 546 GD10130-PA 27..532 18..527 433 27.6 Plus
Dsim\GD18576-PA 436 GD18576-PA 4..417 3..468 428 25.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\T-cp1-PA 532 GJ14733-PA 1..532 1..533 2616 95.1 Plus
Dvir\GJ21610-PA 532 GJ21610-PA 1..532 1..533 1875 66.6 Plus
Dvir\GJ16148-PA 533 GJ16148-PA 30..473 23..468 592 32.7 Plus
Dvir\GJ19908-PA 541 GJ19908-PA 34..478 19..468 556 31 Plus
Dvir\GJ23334-PA 544 GJ23334-PA 14..522 8..524 534 28.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10099-PA 533 GK10099-PA 1..533 1..533 2635 95.3 Plus
Dwil\GK14617-PA 533 GK14617-PA 30..473 23..468 582 32.7 Plus
Dwil\GK23011-PA 542 GK23011-PA 34..534 19..523 566 30.6 Plus
Dwil\GK13436-PA 544 GK13436-PA 14..452 8..458 527 29.8 Plus
Dwil\GK11257-PA 544 GK11257-PA 5..521 4..526 511 26 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17214-PA 533 GE17214-PA 1..533 1..533 2785 98.5 Plus
Dyak\GE12130-PA 533 GE12130-PA 30..473 23..468 580 32.7 Plus
Dyak\GE12411-PA 542 GE12411-PA 34..478 19..468 562 31.2 Plus
Dyak\GE24588-PA 544 GE24588-PA 14..454 8..460 534 29.7 Plus
Dyak\GE24032-PA 557 GE24032-PA 24..535 23..525 508 25.9 Plus

GH13725.hyp Sequence

Translation from 102 to 1703

> GH13725.hyp
MASISLLNPKAEFARAAQALAINISAAKGLQDVMRTNLGPKGTVKMLVSG
AGDIKITKDGNVLLHEMQIQHPTASMIARASTAQDDSTGDGTTTTVMLIG
ELLKQADIYLSEGLHPRIMTDGFEKARDKALEVLDQVKVPVEINKKNLVE
VANTSLKTKVHPALADLLTDVCVNAVLTIASADKTKPVDLHMVELMEMQH
KSDTDTQLVRGLVMDHGARHPDMPKRLENAYILTANVSLEYEKAEVNSGF
FYKTAEEREAFVRAEREFIDQRVKKVIELKRSVCDGTDKTFVLINQKGID
PISLDALAKEGILALRRAKRRNMERLSLACGGTAMNSFDDLQEEHLGYAG
VVYEHVLGENKYTFVEDCKNPLSVTILIKGPNKHTITQIKDAIRDGLRAI
NNTIADKALVPGAGAFEVRAYNELVAFKDTIKGKSRLAVQAFADALLVIP
KTLAVNSGYDAQDTIVKLTVEDRLSPELVGLDLATGEPMKPVDLGVYDNY
IVKKQILNSCSIIASNLLLVDEVMRAGMTSLKG*

GH13725.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tcp-1zeta-PA 533 CG8231-PA 1..533 1..533 2665 100 Plus
CG5525-PA 533 CG5525-PA 30..529 23..524 591 29.5 Plus
Cct5-PA 542 CG8439-PA 34..534 19..523 587 30.6 Plus
Cct5-PB 512 CG8439-PB 8..504 23..523 583 30.6 Plus
Cctgamma-PD 544 CG8977-PD 14..522 8..524 557 27.8 Plus