Clone GH13729 Report

Search the DGRC for GH13729

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:137
Well:29
Vector:pOT2
Associated Gene/Transcriptnemy-RB
Protein status:GH13729.pep: gold
Preliminary Size:2241
Sequenced Size:2226

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8776 2001-07-04 Blastp of sequenced clone
CG8776 2008-04-29 Release 5.5 accounting
CG8776 2008-08-15 Release 5.9 accounting
CG8776 2008-12-18 5.12 accounting

Clone Sequence Records

GH13729.complete Sequence

2226 bp (2226 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060294

> GH13729.complete
CTGATCGCCGCGATCTGATCGTCGTTACACTTCATTTGATAGTAAAATCA
GTGAATTTAATTTAGGATTTTCGTGCGGTTGTTTGTGTTAGTGCGACTGT
TAACAAAAGGAGCCATATAAACAAAAGCATAGAGAAATTAAAACAAAAAA
AAAACTCTCTTATATTTAAAGTGCTTTGTTTATGCCCAACTTGTGTGTGC
CACTTTTCTAAAAATTTTTGGGTGCCTTTTACACGCTACTTGTGGATCGG
CCACTTTCTTTAACTAAAAAGTACTTTTTCGCGTTGTTAGGCGAGCATCA
AAATTTGCATCTACAGAAACCCGCCTTGATTAAATTCGATGTGAACCTGC
GGCCCCTTAAATGAGCACATGAATAGATAACGAACCGAATCCGTCACTGT
TTTGAGATCGCTTTTTGGCCTCGTGTGATTGACAAATTAACGCATTCAGC
TCGATTAGCATCTGTATCCAAACTGGAAAAGTTCTATTAGCGATTAGCGA
TCCCATAGCCAGACTTCGGTTCTCAATTGTCTCTCGATTGTGGCATTTTA
CAGAACCGATATAGAAGCACAATTACGCGGAAAACGACCTTTAGTTGGGC
CATCCCAGATATATTGTATATACACCATATACACCTATATAGAGCCGATC
CGTGACGCACCGCCCAGCGATTCTACGTTTAGTGGGTGGCGGTGACAGCA
TAAGCAAGAAAAACCCAATAAATTTCGGCCCAAATAGCAACACTTGTCTA
AATGCGAGATCGTCACTTGGCCAAAATGCCGCGTGGAGGAACGACAACAT
CGCGCTATGAGGAGGATCCAGATAATGCCTGGAATTGCTGCTCCTGGTGC
GAATACTTGCTGATCGTCATCCTGTCCACGATCCTGCTGGTGGGCGTGCT
GGTGCTAACCCTCTTCTGGGTGATGTTCTACCGCGATGGCTTCGCCTGGT
CGGAGAGTCCCAAGCAGCAGTTCAATCTGCATCCCATCCTCATGATTGCT
GGCTTCGTCACGCTCTCCGGATTTTCCATCTTGATCTATCGTCTGTGCCG
CTGCGTGAAGCAAATCTATGTGAAGCTGATCCACATGTTCTTCCACGCCG
TGGCCATTCCGTGCATCGCCCTGGGTTTCATATCCGTCTTCGCTTCCCAC
GACGCGTTGCATAAGGTCAACTTCTATAGCCTCCACTCGTGGCTGGGCTT
CGTGACAATGGGCATGTTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCT
TTCTGGTAATGCTGTGCTGTGAGAACAAGACCTACAGCTGCCGCTCGGCC
ATGGTGCCCATCCACGCCAGCTTGGGACTGGCCAACTTCTGGCTGGCCAT
TGCCACATCCGTCACGGGACTGATCGAGAAGGAGCGCGAAACCGTCAACG
AGGCGGGCGTGAGCAGTGAGAACAAGCTGGTGGAGCACTACATCACCAGT
GCCATCGGCGTGACCCTGATCTTCATTGGCATCATCGTCACCTTCGCGGT
GCGGCGTTCCAATGCGCCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCA
TTTAGACGGTCCGTCCGGCTCGTCAGAGTCTCCGCCGCCGGAATTGGTCC
ACGGCCAGGAGGGTAAGCGAGTCGCAGCAGGTGTACCCGAGGATTCCGGA
ACTCGGTGACTTGGACTGGACTTGGGGAAACGGACCGGCGGTGTCCTTTC
GCCAGGCTTAGCGCACAGAGACCACGCTTCTGCAACTCTATCCGAACCCT
TTGTAACCTTTTATATGCCAAATTAAATCCACATCATACACTTAGACTAC
TCCATATGGCTATAATCAAAACCTTTGCCCACTTTCAATCTCTCAGTAGG
TGTGTAGGATTAGGAATCTCAGCAGATGAGCAGAAGACCAAGCAAGCAAA
TCTAATCAAAATTTTGACGTGTTCAGCCGAACTTACTGATGCATCCAGGC
ACTTGCAAGCTAGATTAGCCAGTTTTTTGGTACTATAGTAGAATTTTGAT
ATACTCGTAAGCCCATGTAACTAGTGTATGTATGATCGTACCACGTAACG
CATTGAATGTACGCACTCGGACTCAAAACTGTCGCATTTGATGTTTTTTT
GTAATCGTGCAAGTATTTGTATTTTCATAATGCGCTAAGCAACCTAAGCT
GTAAACCAATTTTACAAACAAATAAATACTTTTGCCCTGCCTGAGGGCTC
TCATAATAAAAAAAAAAAAAAAAAAA

GH13729.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8776-RE 2330 CG8776-RE 26..2234 1..2209 11045 100 Plus
CG8776-RG 1847 CG8776-RG 99..1754 554..2209 8280 100 Plus
CG8776-RB 1821 CG8776-RB 70..1725 554..2209 8280 100 Plus
CG8776-RG 1847 CG8776-RG 13..98 1..86 430 100 Plus
CG8776-RB 1821 CG8776-RB 29..69 1..41 205 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8546847..8547642 2207..1412 3905 99.4 Minus
chr2R 21145070 chr2R 8552267..8553068 802..1 3905 99.1 Minus
chr2R 21145070 chr2R 8548228..8548451 1025..802 1120 100 Minus
chr2R 21145070 chr2R 8547933..8548155 1248..1026 1115 100 Minus
chr2R 21145070 chr2R 8547712..8547885 1413..1240 855 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:49:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12664984..12665785 802..1 4010 100 Minus
2R 25286936 2R 12659590..12660387 2209..1412 3990 100 Minus
2R 25286936 2R 12660973..12661196 1025..802 1120 100 Minus
2R 25286936 2R 12660678..12660900 1248..1026 1115 100 Minus
2R 25286936 2R 12660457..12660630 1413..1240 855 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12666183..12666984 802..1 4010 100 Minus
2R 25260384 2R 12660789..12661586 2209..1412 3990 100 Minus
2R 25260384 2R 12662172..12662395 1025..802 1120 100 Minus
2R 25260384 2R 12661877..12662099 1248..1026 1115 100 Minus
2R 25260384 2R 12661656..12661829 1413..1240 855 99.4 Minus
Blast to na_te.dros performed on 2019-03-16 07:13:58 has no hits.

GH13729.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:14:58 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8546847..8547640 1414..2207 99 <- Minus
chr2R 8547712..8547876 1249..1413 100 <- Minus
chr2R 8547933..8548155 1026..1248 100 <- Minus
chr2R 8548228..8548451 802..1025 100 <- Minus
chr2R 8552268..8553068 1..801 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:42 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RB 1..804 752..1555 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:03 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RB 1..804 752..1555 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:17 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RE 1..804 752..1555 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:15 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RB 1..804 752..1555 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:29:27 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RE 1..804 752..1555 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:22 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RE 26..2232 1..2207 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:03 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RE 26..2232 1..2207 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:17 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RE 15..2221 1..2207 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:15 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RE 26..2232 1..2207 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:29:27 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RE 15..2221 1..2207 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:14:58 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12660678..12660900 1026..1248 100 <- Minus
2R 12660973..12661196 802..1025 100 <- Minus
2R 12659592..12660385 1414..2207 100 <- Minus
2R 12660457..12660621 1249..1413 100 <- Minus
2R 12664985..12665785 1..801 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:14:58 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12660678..12660900 1026..1248 100 <- Minus
2R 12660973..12661196 802..1025 100 <- Minus
2R 12659592..12660385 1414..2207 100 <- Minus
2R 12660457..12660621 1249..1413 100 <- Minus
2R 12664985..12665785 1..801 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:14:58 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12660678..12660900 1026..1248 100 <- Minus
2R 12660973..12661196 802..1025 100 <- Minus
2R 12659592..12660385 1414..2207 100 <- Minus
2R 12660457..12660621 1249..1413 100 <- Minus
2R 12664985..12665785 1..801 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:17 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8547097..8547890 1414..2207 100 <- Minus
arm_2R 8547962..8548126 1249..1413 100 <- Minus
arm_2R 8548183..8548405 1026..1248 100 <- Minus
arm_2R 8548478..8548701 802..1025 100 <- Minus
arm_2R 8552490..8553290 1..801 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:06 Download gff for GH13729.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12662172..12662395 802..1025 100 <- Minus
2R 12661877..12662099 1026..1248 100 <- Minus
2R 12660791..12661584 1414..2207 100 <- Minus
2R 12661656..12661820 1249..1413 100 <- Minus
2R 12666184..12666984 1..801 100   Minus

GH13729.pep Sequence

Translation from 751 to 1554

> GH13729.pep
MRDRHLAKMPRGGTTTSRYEEDPDNAWNCCSWCEYLLIVILSTILLVGVL
VLTLFWVMFYRDGFAWSESPKQQFNLHPILMIAGFVTLSGFSILIYRLCR
CVKQIYVKLIHMFFHAVAIPCIALGFISVFASHDALHKVNFYSLHSWLGF
VTMGMFVLQFVIGFFSFLVMLCCENKTYSCRSAMVPIHASLGLANFWLAI
ATSVTGLIEKERETVNEAGVSSENKLVEHYITSAIGVTLIFIGIIVTFAV
RRSNAPASAKVYVTERI*

GH13729.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11463-PA 290 GF11463-PA 31..290 7..267 1225 92.7 Plus
Dana\GF24874-PA 336 GF24874-PA 76..274 14..210 286 36 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22561-PA 290 GG22561-PA 17..290 3..267 1293 90.5 Plus
Dere\GG14525-PA 254 GG14525-PA 33..241 49..256 270 34.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19961-PA 287 GH19961-PA 37..287 17..267 1214 89.2 Plus
Dgri\GH16482-PA 342 GH16482-PA 91..317 15..248 294 33.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-PB 267 CG8776-PB 1..267 1..267 1398 100 Plus
nemy-PG 267 CG8776-PG 1..267 1..267 1398 100 Plus
nemy-PE 267 CG8776-PE 1..267 1..267 1398 100 Plus
nemy-PK 266 CG8776-PK 1..266 1..267 1382 99.6 Plus
nemy-PA 290 CG8776-PA 41..290 18..267 1308 100 Plus
nemy-PL 256 CG8776-PL 8..256 18..267 1292 99.6 Plus
nemy-PC 210 CG8776-PC 1..210 58..267 1085 100 Plus
nemy-PM 209 CG8776-PM 1..209 58..267 1069 99.5 Plus
CG1275-PD 243 CG1275-PD 8..217 35..248 281 33.3 Plus
CG1275-PC 254 CG1275-PC 19..228 35..248 281 33.3 Plus
CG1275-PA 340 CG1275-PA 105..314 35..248 281 33.3 Plus
CG1275-PB 340 CG1275-PB 105..314 35..248 281 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19919-PA 286 GI19919-PA 36..286 17..267 1158 83.3 Plus
Dmoj\GI12153-PA 336 GI12153-PA 116..277 41..210 294 40.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17735-PA 291 GL17735-PA 41..291 17..267 1218 94.4 Plus
Dper\GL24623-PA 332 GL24623-PA 100..287 11..210 282 35.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21312-PB 267 GA21312-PB 1..267 1..267 1313 95.1 Plus
Dpse\GA21312-PA 291 GA21312-PA 41..291 17..267 1219 94.8 Plus
Dpse\GA21312-PC 210 GA21312-PC 1..210 58..267 1053 94.3 Plus
Dpse\GA11787-PA 349 GA11787-PA 100..287 11..210 283 35.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20344-PA 290 GM20344-PA 17..290 3..267 1314 92.3 Plus
Dsec\GM14130-PA 254 GM14130-PA 33..228 49..248 270 35.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25823-PA 290 GD25823-PA 17..290 3..267 1314 92.3 Plus
Dsim\GD13402-PA 340 GD13402-PA 119..278 49..210 274 39.6 Plus
Dsim\GD13398-PA 243 GD13398-PA 20..217 41..248 271 35.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15086-PA 287 GJ15086-PA 37..287 17..267 1212 88.8 Plus
Dvir\GJ13433-PA 338 GJ13433-PA 117..313 41..248 298 36.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21609-PA 289 GK21609-PA 40..289 18..267 1051 88 Plus
Dwil\GK12595-PA 355 GK12595-PA 133..295 41..210 259 37.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13431-PA 290 GE13431-PA 17..290 3..267 1292 90.5 Plus
Dyak\GE21717-PA 254 GE21717-PA 18..241 34..256 274 32.6 Plus

GH13729.hyp Sequence

Translation from 751 to 1554

> GH13729.hyp
MRDRHLAKMPRGGTTTSRYEEDPDNAWNCCSWCEYLLIVILSTILLVGVL
VLTLFWVMFYRDGFAWSESPKQQFNLHPILMIAGFVTLSGFSILIYRLCR
CVKQIYVKLIHMFFHAVAIPCIALGFISVFASHDALHKVNFYSLHSWLGF
VTMGMFVLQFVIGFFSFLVMLCCENKTYSCRSAMVPIHASLGLANFWLAI
ATSVTGLIEKERETVNEAGVSSENKLVEHYITSAIGVTLIFIGIIVTFAV
RRSNAPASAKVYVTERI*

GH13729.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-PB 267 CG8776-PB 1..267 1..267 1398 100 Plus
nemy-PG 267 CG8776-PG 1..267 1..267 1398 100 Plus
nemy-PE 267 CG8776-PE 1..267 1..267 1398 100 Plus
nemy-PK 266 CG8776-PK 1..266 1..267 1382 99.6 Plus
nemy-PA 290 CG8776-PA 41..290 18..267 1308 100 Plus