Clone GH13807 Report

Search the DGRC for GH13807

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:138
Well:7
Vector:pOT2
Associated Gene/TranscriptAats-met-RA
Protein status:GH13807.pep: gold
Preliminary Size:1131
Sequenced Size:1872

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8684 2001-01-01 Release 2 assignment
CG9612 2001-01-01 Release 2 assignment
CG31322 2001-11-12 Blastp of sequenced clone
CG31322 2003-01-01 Sim4 clustering to Release 3
Aats-met 2008-04-29 Release 5.5 accounting
Aats-met 2008-08-15 Release 5.9 accounting
Aats-met 2008-12-18 5.12 accounting

Clone Sequence Records

GH13807.complete Sequence

1872 bp (1872 high quality bases) assembled on 2001-11-12

GenBank Submission: AY069128

> GH13807.complete
TTTAGACGTTTTTTTTTTTTTTACTTATTTGTATATTAAAATAGCTTTTA
AAGTGATGCTTATTAGAAGAATTAAGTGCCTCAGATATTTGGGAACTCGC
TACAACAGTTCGCACTATGTGACAACTCCAATTTTCTATGTAAATGCAGC
TCCTCACATTGGACACCTGTACTCAGCGGTCATAGCCGATGCCCACTGTC
GCTACCAGAGGCTAAGGTATCCAGAGCAGGATGTACGACTCTGCACGGGA
ACGGATGAGCACGGCACAAAGATCCAGCAGGCGGCATCTCTTCACGGGGT
GCCCGTTGCCAAATACTGTGATGATATATCGCAGCGATATCGAGAGGTCT
TCCGCAGTGCCAGCATCCAGCAGGATGACTTTATTCGCACCACGGAGGAT
CGCCACAAGCGGGCAGTGGCCAATTTCTGGCGCACACTTCACACACGCGG
CCACATATATTCGGCCGCCTACAGTGGTTGGTATTGCGTGTCTGACGAAA
CCTTCCTCACCGACTCCCAGCTGAGATTGGACGAGGCCACTGGTACCCGA
TACTCCCTGGAATCTGGACATCCCGTCGAGTGGACCGAGGAAACGAACTA
TATGTTTCGACTGTCACAATTCCAGGACGATGTGCGCCATTGGGTGAAAA
CGGAGGCGCGCGTACGTCCGGCCAAGTTCGAAAAGATTCTGCTGGATACG
CTCAGCGAACCACTGCCGGATGTATCGGTATCACGTCCTTCCAACCGCGT
ACACTGGGCCATTCCCGTTCCCGATGATGACTCGCAGACTGTCTACGTCT
GGTTAGATGCTTTAGTCAACTATCTCAGCTCTGTGGGATATCCAGATGAA
AAGTTTTCTGCCCACTGGCCACCGGCGCAGCAAGTGATAGGGAAGGACAT
CCTCAAGTTCCATGGCATTTACTGGACAGCTTTCCTCCTGGCTGCCGGCT
TGGAACCTCCTGGACAGCTGTACGTTCACTCGCATTGGACCGTCGATGGG
CAGAAGATGTCAAAGAGCAAGCACAACGTGGTGGATCCCCTCCAGGCAGC
GCAGCAGTACACCATGGAGGGCCTGCGATACTTCCTTCTGCGGGAGGGCG
TGGCCCACAGCGATGGCAACTACAGCCACGTAAAGGCGCAGCGCATCCTC
AACTCGGAGCTGGCGGACACCCTGGGCAATCTGCTATCGCGTGCCAGTGC
CAAGTCGCTGAATCCCGGCCAAATCTATCCATCACCCAGCGCGGAGCACT
TGGCGGATCTCCTCCGGAGCCTGGATGTGGCAAAACGCCTGCAGGATTCG
CTTCTGCAGCTGTCAGAGCGATGCGAGTCGCATTATGAGTGCAATCACTT
CCACTTGGTGGCCGACACAACGATGGCGGCTCTGCATGCGGCCAACAACT
TCTTCGAGAGCTCCAAGCCCTGGACGCTAAAGGCGGGAGCACCGGATGGC
AACCAGGCCCGTTTGGAGACCATAATCGCCATGACAATGGACGCGTTGCG
GCTCAGCGGCATTGTGTTGCAGCCCATAATTCCCCAGCTGGCCAACCGGC
TGCTCGATAAGCTGAGCGTCCCCACCGCGCAACGTGGCTGGAATTACTTG
GCCGAGAGTTTTGCCACCAGCCCCAACAGCTCCAACAGTCCTGCGGGACT
CGGCGAGAGCCGTCAATTGGACGGGCAAACCAGTGCGCTGCTCTTCCAGC
GGATTCTCGAAGAGACGTCTGCGAAGGAAGTGAAGGAGCAGAAGCCGCAG
CCAGCCAAGCGGAGCAAATCGAAGAAGAAGGAGCGCCGCGAAACAATGTC
CTGAAGTGGCCGTAATAAACTGATTCCAAAGCCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

GH13807.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-met-RA 2346 Aats-met-RA 48..1872 11..1835 9125 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10076338..10076857 1833..1314 2600 100 Minus
chr3R 27901430 chr3R 10083785..10084208 853..430 2030 98.6 Minus
chr3R 27901430 chr3R 10084289..10084571 430..148 1400 99.6 Minus
chr3R 27901430 chr3R 10083453..10083719 1118..852 1320 99.6 Minus
chr3R 27901430 chr3R 10077484..10077681 1316..1119 975 99.5 Minus
chr3R 27901430 chr3R 10084636..10084773 149..12 660 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:49:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14251493..14252014 1835..1314 2610 100 Minus
3R 32079331 3R 14258963..14259386 853..430 2120 100 Minus
3R 32079331 3R 14259467..14259749 430..148 1415 100 Minus
3R 32079331 3R 14258631..14258897 1118..852 1335 100 Minus
3R 32079331 3R 14252631..14252828 1316..1119 990 100 Minus
3R 32079331 3R 14259814..14259952 149..11 695 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13992324..13992845 1835..1314 2610 100 Minus
3R 31820162 3R 13999794..14000217 853..430 2120 100 Minus
3R 31820162 3R 14000298..14000580 430..148 1415 100 Minus
3R 31820162 3R 13999462..13999728 1118..852 1335 100 Minus
3R 31820162 3R 13993462..13993659 1316..1119 990 100 Minus
3R 31820162 3R 14000645..14000783 149..11 695 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:21:27 has no hits.

GH13807.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:22:43 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10084289..10084569 150..430 99 <- Minus
chr3R 10084636..10084762 23..149 98   Minus
chr3R 10076338..10076854 1317..1833 100 <- Minus
chr3R 10077484..10077681 1119..1316 99 <- Minus
chr3R 10083453..10083717 854..1118 99 <- Minus
chr3R 10083785..10084207 431..853 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:52 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-met-RA 1..1749 56..1804 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:56 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-met-RA 1..1749 56..1804 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:32:52 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-met-RA 1..1749 56..1804 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:32 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-met-RA 1..1749 56..1804 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:19 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-met-RA 1..1749 56..1804 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:04:54 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-met-RA 47..1857 23..1833 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:55 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-met-RA 47..1857 23..1833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:32:52 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-met-RA 52..1862 23..1833 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:32 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-met-RA 47..1857 23..1833 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:19 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-met-RA 52..1862 23..1833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:22:43 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14259814..14259940 23..149 100   Minus
3R 14259467..14259747 150..430 100 <- Minus
3R 14258963..14259385 431..853 100 <- Minus
3R 14251495..14252011 1317..1833 100 <- Minus
3R 14252631..14252828 1119..1316 100 <- Minus
3R 14258631..14258895 854..1118 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:22:43 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14259814..14259940 23..149 100   Minus
3R 14259467..14259747 150..430 100 <- Minus
3R 14258963..14259385 431..853 100 <- Minus
3R 14251495..14252011 1317..1833 100 <- Minus
3R 14252631..14252828 1119..1316 100 <- Minus
3R 14258631..14258895 854..1118 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:22:43 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14259814..14259940 23..149 100   Minus
3R 14259467..14259747 150..430 100 <- Minus
3R 14258963..14259385 431..853 100 <- Minus
3R 14251495..14252011 1317..1833 100 <- Minus
3R 14252631..14252828 1119..1316 100 <- Minus
3R 14258631..14258895 854..1118 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:32:52 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10078353..10078550 1119..1316 100 <- Minus
arm_3R 10077217..10077733 1317..1833 100 <- Minus
arm_3R 10084353..10084617 854..1118 100 <- Minus
arm_3R 10084685..10085107 431..853 100 <- Minus
arm_3R 10085189..10085469 150..430 100 <- Minus
arm_3R 10085536..10085662 23..149 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:35 Download gff for GH13807.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13999462..13999726 854..1118 100 <- Minus
3R 13992326..13992842 1317..1833 100 <- Minus
3R 13993462..13993659 1119..1316 100 <- Minus
3R 13999794..14000216 431..853 100 <- Minus
3R 14000298..14000578 150..430 100 <- Minus
3R 14000645..14000771 23..149 100   Minus

GH13807.hyp Sequence

Translation from 23 to 1803

> GH13807.hyp
TYLYIKIAFKVMLIRRIKCLRYLGTRYNSSHYVTTPIFYVNAAPHIGHLY
SAVIADAHCRYQRLRYPEQDVRLCTGTDEHGTKIQQAASLHGVPVAKYCD
DISQRYREVFRSASIQQDDFIRTTEDRHKRAVANFWRTLHTRGHIYSAAY
SGWYCVSDETFLTDSQLRLDEATGTRYSLESGHPVEWTEETNYMFRLSQF
QDDVRHWVKTEARVRPAKFEKILLDTLSEPLPDVSVSRPSNRVHWAIPVP
DDDSQTVYVWLDALVNYLSSVGYPDEKFSAHWPPAQQVIGKDILKFHGIY
WTAFLLAAGLEPPGQLYVHSHWTVDGQKMSKSKHNVVDPLQAAQQYTMEG
LRYFLLREGVAHSDGNYSHVKAQRILNSELADTLGNLLSRASAKSLNPGQ
IYPSPSAEHLADLLRSLDVAKRLQDSLLQLSERCESHYECNHFHLVADTT
MAALHAANNFFESSKPWTLKAGAPDGNQARLETIIAMTMDALRLSGIVLQ
PIIPQLANRLLDKLSVPTAQRGWNYLAESFATSPNSSNSPAGLGESRQLD
GQTSALLFQRILEETSAKEVKEQKPQPAKRSKSKKKERRETMS*

GH13807.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-met-PC 582 CG31322-PC 1..582 12..593 3061 100 Plus
Aats-met-PB 582 CG31322-PB 1..582 12..593 3061 100 Plus
Aats-met-PA 582 CG31322-PA 1..582 12..593 3061 100 Plus
CG15100-PA 1022 CG15100-PA 258..764 33..515 274 23.5 Plus

GH13807.pep Sequence

Translation from 55 to 1803

> GH13807.pep
MLIRRIKCLRYLGTRYNSSHYVTTPIFYVNAAPHIGHLYSAVIADAHCRY
QRLRYPEQDVRLCTGTDEHGTKIQQAASLHGVPVAKYCDDISQRYREVFR
SASIQQDDFIRTTEDRHKRAVANFWRTLHTRGHIYSAAYSGWYCVSDETF
LTDSQLRLDEATGTRYSLESGHPVEWTEETNYMFRLSQFQDDVRHWVKTE
ARVRPAKFEKILLDTLSEPLPDVSVSRPSNRVHWAIPVPDDDSQTVYVWL
DALVNYLSSVGYPDEKFSAHWPPAQQVIGKDILKFHGIYWTAFLLAAGLE
PPGQLYVHSHWTVDGQKMSKSKHNVVDPLQAAQQYTMEGLRYFLLREGVA
HSDGNYSHVKAQRILNSELADTLGNLLSRASAKSLNPGQIYPSPSAEHLA
DLLRSLDVAKRLQDSLLQLSERCESHYECNHFHLVADTTMAALHAANNFF
ESSKPWTLKAGAPDGNQARLETIIAMTMDALRLSGIVLQPIIPQLANRLL
DKLSVPTAQRGWNYLAESFATSPNSSNSPAGLGESRQLDGQTSALLFQRI
LEETSAKEVKEQKPQPAKRSKSKKKERRETMS*

GH13807.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18774-PA 568 GF18774-PA 1..560 1..569 2555 84 Plus
Dana\GF13746-PA 1020 GF13746-PA 258..764 22..504 265 23.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21397-PA 579 GG21397-PA 1..564 1..567 2880 94 Plus
Dere\GG20938-PA 1021 GG20938-PA 258..764 22..504 263 23.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19679-PA 578 GH19679-PA 1..572 1..577 2382 75.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
MetRS-m-PC 582 CG31322-PC 1..582 1..582 3061 100 Plus
MetRS-m-PB 582 CG31322-PB 1..582 1..582 3061 100 Plus
MetRS-m-PA 582 CG31322-PA 1..582 1..582 3061 100 Plus
MetRS-PA 1022 CG15100-PA 258..764 22..504 274 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24536-PA 579 GI24536-PA 1..579 1..582 2407 75.9 Plus
Dmoj\GI20156-PA 1032 GI20156-PA 258..764 22..504 265 24.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23293-PA 592 GL23293-PA 1..577 1..575 2533 82.5 Plus
Dper\GL10845-PA 1021 GL10845-PA 258..764 22..504 280 24.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16180-PA 588 GA16180-PA 1..573 1..575 2531 82.8 Plus
Dpse\GA13491-PA 1021 GA13491-PA 258..764 22..504 282 24.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25865-PA 582 GM25865-PA 1..582 1..582 3059 97.1 Plus
Dsec\GM19865-PA 1022 GM19865-PA 258..764 22..504 258 23.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20436-PA 582 GD20436-PA 1..582 1..582 3056 97.1 Plus
Dsim\GD25352-PA 1022 GD25352-PA 258..764 22..504 263 23.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22603-PA 583 GJ22603-PA 1..581 1..582 2392 75.7 Plus
Dvir\GJ22433-PA 1016 GJ22433-PA 258..764 22..504 254 24.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10894-PA 581 GK10894-PA 1..579 1..580 2504 80.4 Plus
Dwil\GK20695-PA 1016 GK20695-PA 258..764 22..504 270 24.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10041-PA 579 GE10041-PA 1..579 1..582 2878 94 Plus
Dyak\GE13875-PA 1021 GE13875-PA 258..764 22..504 267 24.1 Plus