Clone GH13810 Report

Search the DGRC for GH13810

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:138
Well:10
Vector:pOT2
Associated Gene/Transcriptebd1-RA
Protein status:GH13810.pep: gold
Preliminary Size:2319
Sequenced Size:2324

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3371 2001-01-01 Release 2 assignment
CG3371 2002-03-19 Blastp of sequenced clone
CG3371 2003-01-01 Sim4 clustering to Release 3
CG3371 2008-04-29 Release 5.5 accounting
CG3371 2008-08-15 Release 5.9 accounting
CG3371 2008-12-18 5.12 accounting

Clone Sequence Records

GH13810.complete Sequence

2324 bp (2324 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094709

> GH13810.complete
TCTAGTTCGCACGGACATCGGAAAATACGCAAGGTGCAGCGCACGGCCAG
TTGGAAAATCACAATCAGAAGACAAATCGAGTGCCTAGGAAGAGAAAACG
AAAGCGAATAGAGCCAAAGCGCATTGAAAGGCCAAAGAAAAGCGAGAAAA
GCAGTGACGAAATGATTTGAATTCGCTTGACAGTCAACGCGCATAATCGT
AGCCATCGCACACACACAGCCGCACGGACACACACACACAGGCGGGCGGG
TGTGTGAGTGAGAGAGCAGAAAGGGTGCAAGGGGTGGGCGAAATTGAGTG
GGCGCAGCAGCAGCAACAAAAACAAACAAGACGAAAACAAACGGCAATTG
CCGTGTAAATTGCACGGAAAGCACAAACAATGCGGATACGCGAAAAACGC
AAGTTGCAGAGGGAGCTGAGGGTGGAGAAGCGCGTGGAGAGGGAGAAAAA
GGAGCACAAGGAGGCCTCCAAGACGCAGGACAACAACAACAAGGCGAAGG
CCACTGACACGGAGGTTCTCACACCAGCTCCTGCGCCTGCGCCTGCTCCA
CCAGCAGCACCCACTTCGACTGCATCACCCACACCCACTAGCACGCACAC
CCCCAGCCTGCCGGCCGCCGAGAAGGTGGCCTTCGACAATCGCATCAAGC
GCAAGAATGTCCTGGCCCTCAACGAAAAGGTTGCTGCTCTGCGGGAATAC
GATCGGCTGCCGGTTTATAAGCACGTTGGCCGGCTGTTCAACTGCAGCCC
AGATCAGATCAAGCGGATCGTGCAGCAGCGCGCTGAGATTCTGAACGCGT
GGGATCAGCGAACCCGCAGGAGCCAGGACGCCAAGACCATGGAGACGAAG
ACCGTCAGGGTCTCGATGTTGGGCAAGGCCGTGTACGATTGGATACGCCG
CATGATGTACTACAAGGACTTCAGCATCTCCGACGGACTCATCCAGAAGA
TGGCGCTGCAGTTCAAGAGCTCCATGAACCTGGCACATTTCTTTCCGCAC
CAGGAGTGGTGCGACAAGTTCAGACGCACCTACAGCATCCAACACAGCGA
CACCAGACTGTTGAAGATAGGCTACACGCAGGGCTACTCGGTGCAGATCA
AGGACATCGTCAAGGACGTCATGTCGGAAAGCATGCCGGAAAGTGGGCCA
CGGAACGGCGAGGAGGATGACGAAGAGGTCAGCTTGGGCAGCCCGGTGAG
CAGCCATCCCCGCAGCTATGTAGAAGACGAGGATGACGAGGTGGATGTCG
ACGGTGGCGGTATTAGCGGCGAGGATGATCTGGAGGAGGAGCCTGATGTC
AAGCCCTCACTAAGCGAACTAAATTTTGCCAGGGCTCTGAAGCCCTTGCC
GCCTCTAGTTAGACTGCCCCTCCAAGCTAACACACCGCCAGGCACCACTC
AAAAAGTTCTCCTGGCCACACCCATTGTTCCGACGCAAGCGGGCGGACAG
CCCATGACCATGACCATCATACCACTAGCCACGCTCGCTCAGAGCATCAC
CAAGATTCCTGCCCCACAGCAGCAGGACAAAGGACCGGTGGTACCGCCGC
CCAAACTAGAGATCAAGCAGGAAAAGGAAATCAAAGTGGAGCCCAAGGAC
CCGGAAGAGCTCCTGGCGAAGCAGCCCGAGGCGGAGCTCCAGGAGAACGA
TGACCGAGCACAAAGGGAAAAGGATCTTGAAATTCCGCCTACAGTGCACA
TAAAAGTGGAGCCAGAGGCTGAGCTGGAATCGGAACTGGACCAAGACCCA
GCGGATCTCGATGAAGACGCGAACAATGGTCGCTCCAGTGTCACCTCGCT
GGCCGAGGTTCTGGCGGCCAATGTGGAGGACGAGATGGAGTACATCGAGC
AGATGCGGCAGCGAAAGGTGAGTTCGCCTGCGGCAGTTGAAAACTCGCTG
AATCCTCGCCAGGGCACCAAACGTCGCTATGAGTCCGCCCAAGACGATAA
CAACAATGGGGGATCCGGCCAAGAAAGTGGGTCCAGTGTCATCAGCTGCG
CCGATGCACGCAAGTACCTAAAGCTACTCGAGGAGTTTGCTCTGTACAAG
GAGAACTACCGGCTGATTGAGCTGATCACACGAGCCGATGAAGTGATGCG
CGAAATGGATGACAATGTGCCGTAGAATGCTCCAAACAGTGAGCGCCACA
TGAAGGAGAACGAAGAGGAGGAGGAATAGCTGCAGCCAAAGAGTGTAATC
TTTGCAAACTGATGCATCTAGAAGATGCACATCGGTCGGATGCAATCAAT
CATTAGATCTAAGGTGAACATAATTTGTATTCGAACCAAATAAACGCAAT
CAAACCAAAAAAAAAAAAAAAAAA

GH13810.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3371-RA 2534 CG3371-RA 161..2468 1..2308 11540 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 682674..684482 2306..498 8895 99.4 Minus
chr3L 24539361 chr3L 684824..685326 500..1 2405 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:49:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 682883..684693 2308..498 9055 100 Minus
3L 28110227 3L 685027..685526 500..1 2500 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 682883..684693 2308..498 9055 100 Minus
3L 28103327 3L 685027..685526 500..1 2500 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:37:51 has no hits.

GH13810.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:38:54 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 682674..684480 500..2306 99 <- Minus
chr3L 684825..685326 1..499 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:53 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
CG3371-RA 1..1746 380..2125 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:30:54 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
CG3371-RA 1..1746 380..2125 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:45:37 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
ebd1-RA 1..1746 380..2125 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:21 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
CG3371-RA 1..1746 380..2125 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:09 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
ebd1-RA 1..1746 380..2125 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:03 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
CG3371-RA 20..2325 1..2306 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:30:54 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
CG3371-RA 20..2325 1..2306 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:37 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
ebd1-RA 24..2329 1..2306 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:22 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
CG3371-RA 20..2325 1..2306 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:09 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
ebd1-RA 24..2329 1..2306 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:54 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
3L 682885..684691 500..2306 100 <- Minus
3L 685028..685526 1..499 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:54 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
3L 682885..684691 500..2306 100 <- Minus
3L 685028..685526 1..499 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:54 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
3L 682885..684691 500..2306 100 <- Minus
3L 685028..685526 1..499 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:37 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 682885..684691 500..2306 100 <- Minus
arm_3L 685028..685526 1..499 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:05 Download gff for GH13810.complete
Subject Subject Range Query Range Percent Splice Strand
3L 682885..684691 500..2306 100 <- Minus
3L 685028..685526 1..499 100   Minus

GH13810.pep Sequence

Translation from 379 to 2124

> GH13810.pep
MRIREKRKLQRELRVEKRVEREKKEHKEASKTQDNNNKAKATDTEVLTPA
PAPAPAPPAAPTSTASPTPTSTHTPSLPAAEKVAFDNRIKRKNVLALNEK
VAALREYDRLPVYKHVGRLFNCSPDQIKRIVQQRAEILNAWDQRTRRSQD
AKTMETKTVRVSMLGKAVYDWIRRMMYYKDFSISDGLIQKMALQFKSSMN
LAHFFPHQEWCDKFRRTYSIQHSDTRLLKIGYTQGYSVQIKDIVKDVMSE
SMPESGPRNGEEDDEEVSLGSPVSSHPRSYVEDEDDEVDVDGGGISGEDD
LEEEPDVKPSLSELNFARALKPLPPLVRLPLQANTPPGTTQKVLLATPIV
PTQAGGQPMTMTIIPLATLAQSITKIPAPQQQDKGPVVPPPKLEIKQEKE
IKVEPKDPEELLAKQPEAELQENDDRAQREKDLEIPPTVHIKVEPEAELE
SELDQDPADLDEDANNGRSSVTSLAEVLAANVEDEMEYIEQMRQRKVSSP
AAVENSLNPRQGTKRRYESAQDDNNNGGSGQESGSSVISCADARKYLKLL
EEFALYKENYRLIELITRADEVMREMDDNVP*

GH13810.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24076-PA 589 GF24076-PA 1..586 1..578 1928 71.5 Plus
Dana\GF24070-PA 485 GF24070-PA 21..173 92..244 231 32.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14647-PA 582 GG14647-PA 1..582 1..581 2470 93 Plus
Dere\GG14642-PA 498 GG14642-PA 19..171 92..244 255 35.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16041-PA 604 GH16041-PA 2..603 18..578 1230 51 Plus
Dgri\GH16035-PA 551 GH16035-PA 20..158 92..228 266 35.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
ebd1-PA 581 CG3371-PA 1..581 1..581 2979 100 Plus
CG13895-PA 499 CG13895-PA 19..171 92..244 250 35.7 Plus
CG13895-PB 506 CG13895-PB 26..178 92..244 250 35.7 Plus
ebd2-PB 367 CG12972-PB 25..259 87..313 157 22.7 Plus
ebd2-PA 367 CG12972-PA 25..259 87..313 157 22.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12299-PA 523 GI12299-PA 17..156 92..228 241 31.4 Plus
Dmoj\GI12305-PA 106 GI12305-PA 54..104 522..579 183 60.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20839-PA 576 GL20839-PA 45..573 64..578 1636 68.6 Plus
Dper\GL24585-PA 355 GL24585-PA 17..234 87..291 163 24.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17411-PA 576 GA17411-PA 45..573 64..578 1601 68.8 Plus
Dpse\GA12609-PA 508 GA12609-PA 16..154 88..227 256 34.3 Plus
Dpse\GA11947-PA 355 GA11947-PA 17..234 87..291 164 24.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14262-PA 581 GM14262-PA 1..581 1..581 2970 96.4 Plus
Dsec\GM14257-PA 469 GM14257-PA 17..125 92..199 211 38.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13519-PA 581 GD13519-PA 1..581 1..581 2635 95.9 Plus
Dsim\GD13514-PA 493 GD13514-PA 17..169 92..244 252 35.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13241-PA 557 GJ13241-PA 1..557 1..577 1405 55.5 Plus
Dvir\GJ13236-PA 532 GJ13236-PA 21..174 92..244 257 31.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16684-PA 620 GK16684-PA 88..620 77..581 1554 66.1 Plus
Dwil\GK16679-PA 504 GK16679-PA 6..203 86..277 260 30.7 Plus
Dwil\GK20421-PA 392 GK20421-PA 34..180 87..232 152 25.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21007-PA 588 GE21007-PA 1..588 1..581 2434 91.7 Plus
Dyak\GE21000-PA 498 GE21000-PA 19..171 92..244 257 35.7 Plus

GH13810.hyp Sequence

Translation from 379 to 2124

> GH13810.hyp
MRIREKRKLQRELRVEKRVEREKKEHKEASKTQDNNNKAKATDTEVLTPA
PAPAPAPPAAPTSTASPTPTSTHTPSLPAAEKVAFDNRIKRKNVLALNEK
VAALREYDRLPVYKHVGRLFNCSPDQIKRIVQQRAEILNAWDQRTRRSQD
AKTMETKTVRVSMLGKAVYDWIRRMMYYKDFSISDGLIQKMALQFKSSMN
LAHFFPHQEWCDKFRRTYSIQHSDTRLLKIGYTQGYSVQIKDIVKDVMSE
SMPESGPRNGEEDDEEVSLGSPVSSHPRSYVEDEDDEVDVDGGGISGEDD
LEEEPDVKPSLSELNFARALKPLPPLVRLPLQANTPPGTTQKVLLATPIV
PTQAGGQPMTMTIIPLATLAQSITKIPAPQQQDKGPVVPPPKLEIKQEKE
IKVEPKDPEELLAKQPEAELQENDDRAQREKDLEIPPTVHIKVEPEAELE
SELDQDPADLDEDANNGRSSVTSLAEVLAANVEDEMEYIEQMRQRKVSSP
AAVENSLNPRQGTKRRYESAQDDNNNGGSGQESGSSVISCADARKYLKLL
EEFALYKENYRLIELITRADEVMREMDDNVP*

GH13810.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
ebd1-PA 581 CG3371-PA 1..581 1..581 2979 100 Plus
CG13895-PA 499 CG13895-PA 19..171 92..244 250 35.7 Plus
CG13895-PB 506 CG13895-PB 26..178 92..244 250 35.7 Plus
ebd2-PB 367 CG12972-PB 25..259 87..313 157 22.7 Plus
ebd2-PA 367 CG12972-PA 25..259 87..313 157 22.7 Plus