Clone GH13823 Report

Search the DGRC for GH13823

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:138
Well:23
Vector:pOT2
Associated Gene/TranscriptCG13630-RA
Protein status:GH13823.pep: gold
Preliminary Size:1125
Sequenced Size:1286

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13630 2001-01-01 Release 2 assignment
CG13630 2001-09-19 Blastp of sequenced clone
CG13630 2003-01-01 Sim4 clustering to Release 3
CG13630 2008-04-29 Release 5.5 accounting
CG13630 2008-08-15 Release 5.9 accounting
CG13630 2008-12-18 5.12 accounting

Clone Sequence Records

GH13823.complete Sequence

1286 bp (1286 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058368

> GH13823.complete
CTATTTTTGGCAGGCACGGAAATTTTTCTCGCATTAATTGTTGAAATAGA
ATGACTCAAAAGTGCGAGACAACCAACTGCGGCAAGGATGCGACCCTGCA
GTGTCCCACCTGCCTAAAGTTGGGCATCAAGGGCTCATTTTTCTGCTCGC
AGCCGTGCTTCAAAGGATTCTGGAAGGAGCACAAGGCGATTCATGCTTTA
GCAGCCGGTGCCTCGAACTCTGCCGAACAGGATGGAGCCTACAATCCATG
GCCACATTTCCGCTTCACCGGCAAGCTCCGCCCGTTCCCACAGACTCCCA
AGCGAACAGTTCCGAACGCCATACAACGTCCAGATTACGCCGATCATCCA
GCAGGACGTTCACTCTCGGAGGAAGCACTGCGGGGCACCAAGATTAAGGT
GCTGGACGACGAGGAGATCGAGGGCATGCGAGTGGCCGGCAGATTGGGTC
GAGAATGCTTGGATGAGGGTGCCAAAGCCGTGGAGGTGGGCATCACCACC
GACGAACTGGATCGTTTGGTCCACGAGGCCGCCATCGAACGGGAGTGCTA
TCCGTCGCCCCTCAACTACTACAACTTCCCCAAGTCCTGTTGCACATCGG
TCAACGAGGTGATTTGCCACGGCATCCCCGATCAGCGTCCTCTACAGGAT
GGAGATCTATGTAACATCGATGTGACCGTCTATCATCGCGGCTTCCATGG
TGATCTCAACGAGACCTTCTTTGTGGGCAATGTCTCGGAGAAGCACAAGA
AACTGGTGCAGGTCACCCACGAGGCGCTCAGCAAGGCCATTGAGTTCGTG
CGTCCGGGTGAAAAGTATCGCGATATTGGCAACGTGATCCAAAAGTATGT
GGCACCACATGGATTCAGCGTGGTGCGCAGCTATTGCGGTCATGGCATTC
ACCGTGTTTTCCACACAGCTCCCAATGTGCCTCACTATGCCAAAAACTCT
GCCGTAGGAGTAATGGCCCCTGGCCACTGCTTCACCATCGAGCCCATGAT
CTCCGTTGGCGTCCAGAAGGCTGAAACCTGGCCAGATGACTGGACTGCTG
TGACCGCCGATGGCCTGTACTCCGCCCAGTTTGAGCAGACACTGCTGGTC
AACGAAACCGGATGCGAGATTCTCACCAAGCGTCGCGAGAACAACGGACA
GCCGTGGTTCATGGACAAGATGTGAGGGTCGACCAACTTGGGCTAATACA
TAACTTCTAGGGCTATCGATCAAGCTTTAATTTGTAATTTTACAATAAAA
TCTAGAGTTTTTATTCCCAAAAAAAAAAAAAAAAAA

GH13823.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13630-RA 1340 CG13630-RA 71..1340 1..1270 6350 100 Plus
Rpb10-RA 519 Rpb10-RA 381..519 1270..1132 695 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20541541..20542281 942..202 3645 99.5 Minus
chr3R 27901430 chr3R 20541157..20541495 1268..930 1605 98.2 Minus
chr3R 27901430 chr3R 20542348..20542551 204..1 1005 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:49:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24718321..24719061 942..202 3705 100 Minus
3R 32079331 3R 24717935..24718275 1270..930 1645 98.8 Minus
3R 32079331 3R 24719128..24719331 204..1 1020 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24459152..24459892 942..202 3705 100 Minus
3R 31820162 3R 24458766..24459106 1270..930 1645 98.8 Minus
3R 31820162 3R 24459959..24460162 204..1 1020 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:35:02 has no hits.

GH13823.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:35:47 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20541157..20541482 943..1268 99 <- Minus
chr3R 20541541..20542278 205..942 99 <- Minus
chr3R 20542348..20542551 1..204 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:54 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 1..1125 51..1175 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:07:11 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 1..1125 51..1175 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:49:19 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 1..1125 51..1175 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:32 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 1..1125 51..1175 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:34 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 1..1125 51..1175 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:57:55 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 32..1299 1..1268 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:07:11 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 32..1299 1..1268 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:49:19 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 34..1301 1..1268 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:32 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 32..1299 1..1268 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:34 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG13630-RA 34..1301 1..1268 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:47 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24717937..24718262 943..1268 100 <- Minus
3R 24718321..24719058 205..942 100 <- Minus
3R 24719128..24719331 1..204 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:47 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24717937..24718262 943..1268 100 <- Minus
3R 24718321..24719058 205..942 100 <- Minus
3R 24719128..24719331 1..204 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:47 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24717937..24718262 943..1268 100 <- Minus
3R 24718321..24719058 205..942 100 <- Minus
3R 24719128..24719331 1..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:49:19 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20543659..20543984 943..1268 100 <- Minus
arm_3R 20544043..20544780 205..942 100 <- Minus
arm_3R 20544850..20545053 1..204 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:15:13 Download gff for GH13823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24458768..24459093 943..1268 100 <- Minus
3R 24459152..24459889 205..942 100 <- Minus
3R 24459959..24460162 1..204 100   Minus

GH13823.pep Sequence

Translation from 50 to 1174

> GH13823.pep
MTQKCETTNCGKDATLQCPTCLKLGIKGSFFCSQPCFKGFWKEHKAIHAL
AAGASNSAEQDGAYNPWPHFRFTGKLRPFPQTPKRTVPNAIQRPDYADHP
AGRSLSEEALRGTKIKVLDDEEIEGMRVAGRLGRECLDEGAKAVEVGITT
DELDRLVHEAAIERECYPSPLNYYNFPKSCCTSVNEVICHGIPDQRPLQD
GDLCNIDVTVYHRGFHGDLNETFFVGNVSEKHKKLVQVTHEALSKAIEFV
RPGEKYRDIGNVIQKYVAPHGFSVVRSYCGHGIHRVFHTAPNVPHYAKNS
AVGVMAPGHCFTIEPMISVGVQKAETWPDDWTAVTADGLYSAQFEQTLLV
NETGCEILTKRRENNGQPWFMDKM*

GH13823.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17756-PA 373 GF17756-PA 1..373 1..374 1900 92.8 Plus
Dana\GF15789-PA 316 GF15789-PA 43..315 82..360 630 44.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12327-PA 374 GG12327-PA 1..374 1..374 2015 99.2 Plus
Dere\GG10132-PA 317 GG10132-PA 43..315 82..360 616 43.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19130-PA 374 GH19130-PA 1..374 1..374 1835 88.8 Plus
Dgri\GH13612-PA 294 GH13612-PA 9..292 67..361 595 41 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13630-PA 374 CG13630-PA 1..374 1..374 2048 100 Plus
CG5188-PA 317 CG5188-PA 30..315 73..360 628 43.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23587-PA 374 GI23587-PA 1..374 1..374 1824 88.2 Plus
Dmoj\GI20466-PA 284 GI20466-PA 38..282 116..361 628 48.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13868-PA 344 GL13868-PA 1..344 1..374 1619 80.7 Plus
Dper\GL19147-PA 315 GL19147-PA 29..315 71..363 585 41.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12422-PA 374 GA12422-PA 1..374 1..374 1822 88.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23468-PA 374 GM23468-PA 1..374 1..374 2022 99.5 Plus
Dsec\GM18394-PA 317 GM18394-PA 43..315 82..360 632 43.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18276-PA 329 GD18276-PA 1..329 1..374 1710 87.2 Plus
Dsim\GD23701-PA 317 GD23701-PA 30..315 73..360 631 43.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23563-PA 374 GJ23563-PA 1..374 1..374 1820 87.7 Plus
Dvir\GJ13807-PA 294 GJ13807-PA 10..292 67..360 636 44.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13250-PA 371 GK13250-PA 3..371 4..374 1836 90.8 Plus
Dwil\GK14873-PA 256 GK14873-PA 16..254 121..360 596 47.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10781-PA 374 GE10781-PA 1..374 1..374 2013 98.9 Plus
Dyak\GE18944-PA 317 GE18944-PA 43..317 82..362 628 44.2 Plus

GH13823.hyp Sequence

Translation from 50 to 1174

> GH13823.hyp
MTQKCETTNCGKDATLQCPTCLKLGIKGSFFCSQPCFKGFWKEHKAIHAL
AAGASNSAEQDGAYNPWPHFRFTGKLRPFPQTPKRTVPNAIQRPDYADHP
AGRSLSEEALRGTKIKVLDDEEIEGMRVAGRLGRECLDEGAKAVEVGITT
DELDRLVHEAAIERECYPSPLNYYNFPKSCCTSVNEVICHGIPDQRPLQD
GDLCNIDVTVYHRGFHGDLNETFFVGNVSEKHKKLVQVTHEALSKAIEFV
RPGEKYRDIGNVIQKYVAPHGFSVVRSYCGHGIHRVFHTAPNVPHYAKNS
AVGVMAPGHCFTIEPMISVGVQKAETWPDDWTAVTADGLYSAQFEQTLLV
NETGCEILTKRRENNGQPWFMDKM*

GH13823.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13630-PA 374 CG13630-PA 1..374 1..374 2048 100 Plus
CG5188-PA 317 CG5188-PA 30..315 73..360 628 43.5 Plus