Clone GH13824 Report

Search the DGRC for GH13824

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:138
Well:24
Vector:pOT2
Associated Gene/TranscriptOrc2-RA
Protein status:GH13824.pep: gold
Preliminary Size:1947
Sequenced Size:1984

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3041 2001-01-01 Release 2 assignment
CG3041 2001-07-04 Blastp of sequenced clone
CG3041 2003-01-01 Sim4 clustering to Release 3
Orc2 2008-04-29 Release 5.5 accounting
Orc2 2008-08-15 Release 5.9 accounting
Orc2 2008-12-18 5.12 accounting

Clone Sequence Records

GH13824.complete Sequence

1984 bp (1984 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051471

> GH13824.complete
CCACTTCTGAGCATTGATGAAGTGGCAAGCGTCATGAGTGCCAGCAACAA
AGGCGGTTACAAGACGCCGCGGAAGGAGAACCTCATGTCCATTGAGAACC
TCACCAATTCGGAGGAGGAATCCGAGGACTTGAACACGGCAATGGTTGGG
AATGCAGTGGAATCTCAGCCCAAGGTCACCAGTCGGCGTTCCACCCGACG
TCCAAGTCCCACCAAGAAATACCAGGCGTACCAGAAGGAAAGCAATGGAA
AAGGCCAGGAAGAGCGAATTGTTGTGAACTATGTGGAAATGTCCGATGAA
CGGAGCAGCGATGCGGAGGATCAGGAAGAAGAAGAAAGCATCGAGGAGTC
GGAAAATGCTGCCCGTCCCGCTGCCAAGGATCTGCATCTCATCCAATCCG
AGTACAATGTGGCCGGCACCAGCATGTTTGGCTTCAATACGCCCAAGAAA
CGCGATGCCATGGCACTGGCCGCCCTAAATGCCACGCCCTGCACGCCCAA
GACCCCAAAAACGCCGCGTTTGGGTGTCAAGACGCCGGATACGAAGCGCA
AGAAGTCCATGGATCAGCCAAAGACTCCCGCCCATGTGCGCACCCGCGTC
AAGAAGCAGATTGCCAAAATAGTGGCCGACTCAGATGAGGATTTTTCTGG
AGATGAAAGCGATTTCCGGCCCAGTGACGAGGAATCCTCCTCCAGCAGCA
GTAGCAGCGATGCTGGCAACTCCTCTGACAACGACGCCGCCGATGATGAG
CCCAAAACGCCCAGTAGAGCCCGCCGTGCCATTGTAGTCCCCGTTCTGCC
GAAAACTCCATCGGCAGCCCGCCTGCGACAATCGGCGAGGGCGAAAAAAT
CGAATGAGTTTGTGCCCGAGAGCGATGGTTACTTTCACTCGCATGCCAGC
AGCAAGATCCTCACTTCGGATCACACCTTGGATCGCCTAAAGAATCCTCG
CCTGGCCGCCGATCGTGTTTTCAGTTTGCTGTCGGAAATCAAGACATCGG
CGGAGCATGAGGGTTCTATTAATGCCATTATGGAGGAGTATCGATCGTAC
TTTCCCAAGTGGATGTGTATTCTGAACGAAGGCTTCAATATACTTCTATA
TGGATTGGGCTCCAAGCACCAGCTGCTGCAGTCATTCCATCGGGAAGTTT
TGCATAAGCAAACGGTATTGGTGGTGAATGGCTTCTTTCCCAGTCTGACC
ATCAAGGATATGCTGGATAGCATCACAAGCGACATATTAGATGCGGGCAT
TAGTCCGGCTAATCCACATGAAGCAGTGGATATGATCGAGGAGGAGTTCG
CACTGATACCGGAAACACATTTGTTCTTAATCGTCCATAATCTGGATGGA
GCCATGCTTCGCAATGTGAAGGCACAGGCGATTCTTTCGCGCCTGGCGCG
CATACCGAACATTCATCTACTGGCCTCCATTGATCACATAAATACCCCAC
TTTTGTGGGACCAGGGAAAGCTGTGCAGCTTCAACTTCTCGTGGTGGGAC
TGCACAACAATGCTGCCATATACGAACGAAACTGCGTTCGAGAACTCGCT
GCTGGTGCAGAATTCCGGCGAATTGGCCCTCTCCTCGATGCGCAGTGTCT
TCTCATCGCTAACGACCAATTCGCGTGGCATTTACATGCTGATTGTTAAG
TATCAATTGAAGAACAAGGGCAATGCCACATACCAGGGCATGCCGTTCAG
GGATCTCTATTCGAGTTGTCGCGAAGCATTTTTGGTCAGCTCAGATCTGG
CACTGCGTGCCCAGCTCACCGAGTTCCTCGACCACAAGCTGGTCAAATCG
AAACGGAGCGTTGATGGCTCCGAACAGCTAACCATTCCCATTGATGGCGC
ACTGCTGCAGCAGTTTCTCGAGGAGCAGGAGAAGAAATAGGCCATCGGCG
TAATTTTAGAACATATTAATTTATTATCTAATATTGTTAAATACAATTAC
AATTTCGCTTTTTAAAAAAAAAAAAAAAAAAAAA

GH13824.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Orc2-RA 2076 Orc2-RA 53..2020 1..1968 9825 99.9 Plus
Orc2.b 2025 Orc2.b 53..2024 1..1968 9760 99.7 Plus
Orc2.a 2030 Orc2.a 79..2029 18..1968 9740 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9790560..9791403 608..1451 4220 100 Plus
chr3R 27901430 chr3R 9789902..9790491 18..607 2950 100 Plus
chr3R 27901430 chr3R 9791476..9791985 1454..1963 2550 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:49:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13965650..13966493 608..1451 4220 100 Plus
3R 32079331 3R 13964992..13965581 18..607 2950 100 Plus
3R 32079331 3R 13966566..13967080 1454..1968 2575 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13706481..13707324 608..1451 4220 100 Plus
3R 31820162 3R 13705823..13706412 18..607 2950 100 Plus
3R 31820162 3R 13707397..13707911 1454..1968 2575 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:07:06 has no hits.

GH13824.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:07:58 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9790560..9791405 608..1453 99 -> Plus
chr3R 9789827..9789843 1..17 100 -> Plus
chr3R 9789902..9790491 18..607 100 -> Plus
chr3R 9791476..9791985 1454..1963 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:55 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 1..1857 34..1890 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:04 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 1..1857 34..1890 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:37:36 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 1..1857 34..1890 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:16 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 1..1857 34..1890 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:52:01 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 1..1857 34..1890 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:23 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 1..1963 1..1963 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:04 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 1..1963 1..1963 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:37:36 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 33..1995 1..1963 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:16 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 1..1963 1..1963 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:52:01 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 33..1995 1..1963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:07:58 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13964917..13964933 1..17 100 -> Plus
3R 13964992..13965581 18..607 100 -> Plus
3R 13965650..13966495 608..1453 99 -> Plus
3R 13966566..13967075 1454..1963 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:07:58 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13964917..13964933 1..17 100 -> Plus
3R 13964992..13965581 18..607 100 -> Plus
3R 13965650..13966495 608..1453 99 -> Plus
3R 13966566..13967075 1454..1963 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:07:58 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13964917..13964933 1..17 100 -> Plus
3R 13964992..13965581 18..607 100 -> Plus
3R 13965650..13966495 608..1453 99 -> Plus
3R 13966566..13967075 1454..1963 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:37:36 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9790639..9790655 1..17 100 -> Plus
arm_3R 9790714..9791303 18..607 100 -> Plus
arm_3R 9791372..9792217 608..1453 99 -> Plus
arm_3R 9792288..9792797 1454..1963 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:08 Download gff for GH13824.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13705823..13706412 18..607 100 -> Plus
3R 13706481..13707326 608..1453 99 -> Plus
3R 13707397..13707906 1454..1963 100   Plus
3R 13705748..13705764 1..17 100 -> Plus

GH13824.hyp Sequence

Translation from 1 to 1889

> GH13824.hyp
PLLSIDEVASVMSASNKGGYKTPRKENLMSIENLTNSEEESEDLNTAMVG
NAVESQPKVTSRRSTRRPSPTKKYQAYQKESNGKGQEERIVVNYVEMSDE
RSSDAEDQEEEESIEESENAARPAAKDLHLIQSEYNVAGTSMFGFNTPKK
RDAMALAALNATPCTPKTPKTPRLGVKTPDTKRKKSMDQPKTPAHVRTRV
KKQIAKIVADSDEDFSGDESDFRPSDEESSSSSSSSDAGNSSDNDAADDE
PKTPSRARRAIVVPVLPKTPSAARLRQSARAKKSNEFVPESDGYFHSHAS
SKILTSDHTLDRLKNPRLAADRVFSLLSEIKTSAEHEGSINAIMEEYRSY
FPKWMCILNEGFNILLYGLGSKHQLLQSFHREVLHKQTVLVVNGFFPSLT
IKDMLDSITSDILDAGISPANPHEAVDMIEEEFALIPETHLFLIVHNLDG
AMLRNVKAQAILSRLARIPNIHLLASIDHINTPLLWDQGKLCSFNFSWWD
CTTMLPYTNETAFENSLLVQNSGELALSSMRSVFSSLTTNSRGIYMLIVK
YQLKNKGNATYQGMPFRDLYSSCREAFLVSSDLALRAQLTEFLDHKLVKS
KRSVDGSEQLTIPIDGALLQQFLEEQEKK*

GH13824.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Orc2-PA 618 CG3041-PA 1..618 12..629 3150 100 Plus

GH13824.pep Sequence

Translation from 33 to 1889

> GH13824.pep
MSASNKGGYKTPRKENLMSIENLTNSEEESEDLNTAMVGNAVESQPKVTS
RRSTRRPSPTKKYQAYQKESNGKGQEERIVVNYVEMSDERSSDAEDQEEE
ESIEESENAARPAAKDLHLIQSEYNVAGTSMFGFNTPKKRDAMALAALNA
TPCTPKTPKTPRLGVKTPDTKRKKSMDQPKTPAHVRTRVKKQIAKIVADS
DEDFSGDESDFRPSDEESSSSSSSSDAGNSSDNDAADDEPKTPSRARRAI
VVPVLPKTPSAARLRQSARAKKSNEFVPESDGYFHSHASSKILTSDHTLD
RLKNPRLAADRVFSLLSEIKTSAEHEGSINAIMEEYRSYFPKWMCILNEG
FNILLYGLGSKHQLLQSFHREVLHKQTVLVVNGFFPSLTIKDMLDSITSD
ILDAGISPANPHEAVDMIEEEFALIPETHLFLIVHNLDGAMLRNVKAQAI
LSRLARIPNIHLLASIDHINTPLLWDQGKLCSFNFSWWDCTTMLPYTNET
AFENSLLVQNSGELALSSMRSVFSSLTTNSRGIYMLIVKYQLKNKGNATY
QGMPFRDLYSSCREAFLVSSDLALRAQLTEFLDHKLVKSKRSVDGSEQLT
IPIDGALLQQFLEEQEKK*

GH13824.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16229-PA 620 GF16229-PA 1..620 1..618 2692 83.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16829-PA 618 GG16829-PA 1..618 1..618 2870 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22255-PA 571 GH22255-PA 20..570 50..618 2371 80.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Orc2-PA 618 CG3041-PA 1..618 1..618 3150 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21981-PA 604 GI21981-PA 13..604 7..618 2330 78.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24230-PA 630 GL24230-PA 1..630 1..618 2538 82 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15825-PA 630 GA15825-PA 1..630 1..618 2532 81.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24145-PA 618 GM24145-PA 1..618 1..618 3221 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18940-PA 618 GD18940-PA 1..618 1..618 3233 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14342-PA 622 GJ14342-PA 10..622 1..618 2569 78.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22682-PA 638 GK22682-PA 13..638 3..618 2442 76.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24212-PA 618 GE24212-PA 1..618 1..618 3047 95.1 Plus