Clone GH13848 Report

Search the DGRC for GH13848

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:138
Well:48
Vector:pOT2
Associated Gene/TranscriptCG14995-RH
Protein status:GH13848.pep: gold
Preliminary Size:1941
Sequenced Size:1889

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14995 2001-01-01 Release 2 assignment
CG14995 2001-09-19 Blastp of sequenced clone
CG14995 2003-01-01 Sim4 clustering to Release 3
CG14995 2008-04-29 Release 5.5 accounting
CG14995 2008-08-15 Release 5.9 accounting
CG14995 2008-12-18 5.12 accounting

Clone Sequence Records

GH13848.complete Sequence

1889 bp (1889 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058369

> GH13848.complete
CAGCCACTATAGTGAAAGCTTCGATCTGTGTTGAATGGGTCTGCGATCTG
GTGTCTGGGGTTTGGGGGATCTGCCCACTTTGCTGCTCACTTCGGTCGCT
CCGGCTGCTTTCACTCGACCCAATTCCAGGGGCAATCTTCTAACCAGTTT
AGAAGTGTCCACTTTGGAGCGAGTCACGATTTCCTGGACTGGAAAAACAC
GCGCCCCTCGAGAAAAACGGGGCAGTGATCTCAGCGATGTGTCCATCATC
AAGCGAATGCGTGGAGTGGAAGTTCTGGCTCTTAGTGTCAACAAGATCAG
CACGCTGTCGACCTTCGAGGATTGCACCAAACTGCAGGAGCTATATTTGC
GCAAGAACAGCATCTCTGACATCAACGAGATCGCCTACCTACAAAATCTT
CCGAGTCTCAGGAATCTCTGGCTGGAGGAAAATCCCTGCTGCGAACGAGC
GGGTCCCAACTATCGTTCGATCGTATTACGCGCCCTGCCGAACCTCAAGA
AACTCGACAATGTTGAGGTCACACAGCAGGAGGTGGAGGATGCGCTGCGT
GGAGGCGGAGTCGCCGCACCCGAGGACGAGGTCTACGAGGATGCATACCA
GCAACAGCAGCAGTCGAGGCGATCATCGCCGCAGCAGATACTGCAGCAGC
AGCAACACAGCTACCCGCAACACTCGCCGCCGCCGCAGCAGCAATATCAG
CAGCAGCAACAGCAGCAGCAGCAGCAGCAGCGCGGCTGCACCACTCCCAC
GAAAGAGGAATACTACCAGTCGGACAGACCCGCCTACCCGGCGCACTACC
GCCACAGCCAGACGGACCTAACCGAGTGGGAGGAGCACCAGCAGGTGCCC
CAGGTGCACCACAATCCCTATGGCAGCCAGAAGCAGTTGCACCAGCCGCA
GCGACGCAGCGCAGGTCCGGAGATGACGCCCTATCGTAACGGCAGTGCCC
GGGAGAACGGCGGCGAATGGGATCCGGAGGACAGGTCGAGGGCGAGGCGA
CCCGAGGGAAGATATAGTGATGGGACCTCGTCATTGTCGGCCTCTGTGAT
GAATCACTACTCGGGCTACCATCGCAGGCCCATAAATAGGAATTCAAATA
TTCTCTCCGCCGCGCTGTGTTTGGTGAAGGAGTTAGACTACGCCAGTCTG
GAGGTTCTGGAGCACGCTGTGCGGTGTCGCATTGATGAGCTGGCGAACGA
ATGATGAAGACGACTCTCTAATCGCATGTCGATTAGCTAATCCAACGCCT
CAGCGGCGTTGCAAAATACAAATGACCAGGAAAACTGAACACACATAAAA
GACAAGACACGAGCAGCTGTAGGGGTTGCGAGAGGAAAGGGGAAAACTGA
TATTATACTAACGTCTTAAGCAACAATTAACAATTACAAATCAGATACTT
AACGAGGATAAGGATTCATACTTGCCAATTGAAAACTGTCATAGTGTAAC
TAGCAACTTTTGTAAGCATTTTGTTATGTAACGAACTTTGCTATTGTAAA
CACATAACGAAACAGTAAGCTAGAACATAATCCGCCTATTGATCCCAGAT
CCTGTTCATTTGATACCCAATCAATCCCAAGCACAGACCACAAAAACTAG
CCCTTTTTTTGTACTTAACTCGAGAAGATCGACTAGCGAACTAATGTCGC
CCAAGGCGAAGGAGCACAATGTATCTTCCTAGATTCTTAATAAGATTAGT
TGAAATCATACTCATGACTTTGTTAAATATTTGTACGCAAAAGCAAATAA
CGCTAAACCTTAATTTTAATATATTTACCTAAAATGCAATGAACACGTCC
AGTTTATGTTTGCCGTTCTCTTTTTAACGATTACGTTGGAAACTAAAATG
CAAAAAATAAACAAATTAACAAAAAAAAAAAAAAAAAAA

GH13848.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14995-RH 1872 CG14995-RH 1..1871 1..1871 9355 100 Plus
CG14995.a 1968 CG14995.a 852..1967 756..1871 5580 100 Plus
CG14995-RC 3333 CG14995-RC 2217..3332 756..1871 5580 100 Plus
CG14995.a 1968 CG14995.a 1..757 1..757 3785 100 Plus
CG14995-RC 3333 CG14995-RC 1509..2050 219..760 2710 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4093729..4094509 1870..1090 3905 100 Minus
chr3L 24539361 chr3L 4096892..4097190 758..460 1495 100 Minus
chr3L 24539361 chr3L 4095021..4095262 997..756 1210 100 Minus
chr3L 24539361 chr3L 4100381..4100600 220..1 1100 100 Minus
chr3L 24539361 chr3L 4097412..4097587 459..284 880 100 Minus
chr3L 24539361 chr3L 4094586..4094681 1090..995 480 100 Minus
chr3L 24539361 chr3L 4100166..4100232 285..219 335 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:50:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4094342..4095123 1871..1090 3910 100 Minus
3L 28110227 3L 4097506..4097804 758..460 1495 100 Minus
3L 28110227 3L 4095635..4095876 997..756 1210 100 Minus
3L 28110227 3L 4100995..4101214 220..1 1100 100 Minus
3L 28110227 3L 4098026..4098201 459..284 880 100 Minus
3L 28110227 3L 4095200..4095295 1090..995 480 100 Minus
3L 28110227 3L 4100780..4100846 285..219 335 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4094342..4095123 1871..1090 3910 100 Minus
3L 28103327 3L 4097506..4097804 758..460 1495 100 Minus
3L 28103327 3L 4095635..4095876 997..756 1210 100 Minus
3L 28103327 3L 4100995..4101214 220..1 1100 100 Minus
3L 28103327 3L 4098026..4098201 459..284 880 100 Minus
3L 28103327 3L 4095200..4095295 1090..995 480 100 Minus
3L 28103327 3L 4100780..4100846 285..219 335 100 Minus
Blast to na_te.dros performed 2019-03-16 02:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6717..6865 582..730 303 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6801..6977 597..769 281 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2469 597..731 272 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6954 597..784 243 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2442 597..731 242 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2514 597..731 230 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2815..3024 597..794 219 61.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2530 597..752 211 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2763..2889 596..728 199 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2784..2966 587..769 178 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6837..7088 597..851 142 57.4 Plus
roo 9092 roo DM_ROO 9092bp 1074..1149 597..672 136 67.5 Plus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 173..264 1855..1761 117 60 Minus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 4921..4950 1840..1869 114 86.7 Plus

GH13848.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:13:07 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4093729..4094508 1091..1870 100 <- Minus
chr3L 4094586..4094679 997..1090 100 <- Minus
chr3L 4095022..4095260 758..996 100 <- Minus
chr3L 4096893..4097190 460..757 84 <- Minus
chr3L 4097412..4097585 286..459 100 <- Minus
chr3L 4100166..4100231 220..285 100 <- Minus
chr3L 4100382..4100600 1..219 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:57 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG14995-RD 72..1065 213..1204 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:07:46 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG14995-RH 1..1170 35..1204 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:38 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG14995-RH 1..1170 35..1204 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:33 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG14995-RD 72..1065 213..1204 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:00:47 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG14995-RH 1..1170 35..1204 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:57:56 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG14995-RE 1..1870 1..1870 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:07:46 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG14995-RH 1..1870 1..1870 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:38 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG14995-RH 1..1870 1..1870 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:33 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG14995-RE 1..1870 1..1870 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:00:47 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG14995-RH 1..1870 1..1870 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:07 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4095200..4095293 997..1090 100 <- Minus
3L 4094343..4095122 1091..1870 100 <- Minus
3L 4095636..4095874 758..996 100 <- Minus
3L 4097507..4097804 460..757 100 <- Minus
3L 4098026..4098199 286..459 100 <- Minus
3L 4100780..4100845 220..285 100 <- Minus
3L 4100996..4101214 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:07 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4095200..4095293 997..1090 100 <- Minus
3L 4094343..4095122 1091..1870 100 <- Minus
3L 4095636..4095874 758..996 100 <- Minus
3L 4097507..4097804 460..757 100 <- Minus
3L 4098026..4098199 286..459 100 <- Minus
3L 4100780..4100845 220..285 100 <- Minus
3L 4100996..4101214 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:07 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4095200..4095293 997..1090 100 <- Minus
3L 4094343..4095122 1091..1870 100 <- Minus
3L 4095636..4095874 758..996 100 <- Minus
3L 4097507..4097804 460..757 100 <- Minus
3L 4098026..4098199 286..459 100 <- Minus
3L 4100780..4100845 220..285 100 <- Minus
3L 4100996..4101214 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:38 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4094343..4095122 1091..1870 100 <- Minus
arm_3L 4095200..4095293 997..1090 100 <- Minus
arm_3L 4095636..4095874 758..996 100 <- Minus
arm_3L 4097507..4097804 460..757 100 <- Minus
arm_3L 4098026..4098199 286..459 100 <- Minus
arm_3L 4100780..4100845 220..285 100 <- Minus
arm_3L 4100996..4101214 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:15:54 Download gff for GH13848.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4094343..4095122 1091..1870 100 <- Minus
3L 4095200..4095293 997..1090 100 <- Minus
3L 4095636..4095874 758..996 100 <- Minus
3L 4097507..4097804 460..757 100 <- Minus
3L 4098026..4098199 286..459 100 <- Minus
3L 4100780..4100845 220..285 100 <- Minus
3L 4100996..4101214 1..219 100   Minus

GH13848.pep Sequence

Translation from 34 to 1203

> GH13848.pep
MGLRSGVWGLGDLPTLLLTSVAPAAFTRPNSRGNLLTSLEVSTLERVTIS
WTGKTRAPREKRGSDLSDVSIIKRMRGVEVLALSVNKISTLSTFEDCTKL
QELYLRKNSISDINEIAYLQNLPSLRNLWLEENPCCERAGPNYRSIVLRA
LPNLKKLDNVEVTQQEVEDALRGGGVAAPEDEVYEDAYQQQQQSRRSSPQ
QILQQQQHSYPQHSPPPQQQYQQQQQQQQQQQRGCTTPTKEEYYQSDRPA
YPAHYRHSQTDLTEWEEHQQVPQVHHNPYGSQKQLHQPQRRSAGPEMTPY
RNGSARENGGEWDPEDRSRARRPEGRYSDGTSSLSASVMNHYSGYHRRPI
NRNSNILSAALCLVKELDYASLEVLEHAVRCRIDELANE*

GH13848.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24405-PA 479 GF24405-PA 323..479 239..389 652 79 Plus
Dana\GF24405-PA 479 GF24405-PA 28..153 63..188 606 88.9 Plus
Dana\GF20473-PA 447 GF20473-PA 29..138 63..172 321 56.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14222-PA 471 GG14222-PA 321..471 239..389 740 88.7 Plus
Dere\GG14222-PA 471 GG14222-PA 28..184 63..214 654 84.7 Plus
Dere\GG18376-PA 363 GG18376-PA 29..138 63..172 342 59.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17002-PA 469 GH17002-PA 310..469 236..389 593 76.2 Plus
Dgri\GH17002-PA 469 GH17002-PA 28..154 63..189 576 81.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14995-PH 389 CG14995-PH 1..389 1..389 2045 100 Plus
CG14995-PD 354 CG14995-PD 28..354 63..389 1730 100 Plus
CG14995-PG 362 CG14995-PG 28..362 63..389 1711 97.6 Plus
CG14995-PC 411 CG14995-PC 28..411 63..389 1641 84.9 Plus
CG14995-PI 419 CG14995-PI 28..419 63..389 1622 83.2 Plus
CG14995-PA 454 CG14995-PA 28..276 63..318 927 74.5 Plus
CG14995-PF 232 CG14995-PF 28..206 63..241 925 100 Plus
CG14995-PA 454 CG14995-PA 262..454 202..389 816 80.9 Plus
CG15208-PC 365 CG15208-PC 32..357 66..379 347 30.7 Plus
CG15208-PB 365 CG15208-PB 32..357 66..379 347 30.7 Plus
CG15208-PA 365 CG15208-PA 32..357 66..379 347 30.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11416-PA 469 GI11416-PA 312..469 236..389 670 79.1 Plus
Dmoj\GI11416-PA 469 GI11416-PA 28..154 63..189 543 79.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16756-PA 471 GL16756-PA 316..471 239..389 663 80.9 Plus
Dper\GL16756-PA 471 GL16756-PA 28..178 63..201 555 75 Plus
Dper\GL20213-PA 289 GL20213-PA 28..278 63..379 373 34.5 Plus
Dper\GL14976-PA 390 GL14976-PA 30..168 65..205 322 50.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13412-PA 471 GA13412-PA 316..471 239..389 669 81.5 Plus
Dpse\GA13412-PA 471 GA13412-PA 28..178 63..201 556 75 Plus
Dpse\GA13570-PA 392 GA13570-PA 28..381 63..379 376 30.9 Plus
Dpse\GA22380-PA 379 GA22380-PA 30..158 65..196 329 50.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14015-PA 455 GM14015-PA 305..455 239..389 797 96.7 Plus
Dsec\GM14015-PA 455 GM14015-PA 28..207 63..241 690 87.2 Plus
Dsec\GM11441-PA 258 GM11441-PA 31..161 68..202 291 44.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13294-PA 414 GD13294-PA 264..414 239..389 780 95.4 Plus
Dsim\GD13294-PA 414 GD13294-PA 28..166 63..241 422 64.1 Plus
Dsim\GD24785-PA 258 GD24785-PA 31..161 68..202 284 43.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13612-PA 454 GJ13612-PA 299..454 239..389 651 77.6 Plus
Dvir\GJ13612-PA 454 GJ13612-PA 28..154 63..189 555 80.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13704-PA 475 GK13704-PA 323..475 236..389 608 75.6 Plus
Dwil\GK13704-PA 475 GK13704-PA 28..163 63..202 508 68.6 Plus
Dwil\GK25851-PA 418 GK25851-PA 28..136 63..171 290 47.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20650-PA 467 GE20650-PA 317..467 239..389 747 89.4 Plus
Dyak\GE20650-PA 467 GE20650-PA 28..153 63..188 607 89.7 Plus
Dyak\GE15894-PA 421 GE15894-PA 29..138 63..172 338 59.1 Plus

GH13848.hyp Sequence

Translation from 34 to 1203

> GH13848.hyp
MGLRSGVWGLGDLPTLLLTSVAPAAFTRPNSRGNLLTSLEVSTLERVTIS
WTGKTRAPREKRGSDLSDVSIIKRMRGVEVLALSVNKISTLSTFEDCTKL
QELYLRKNSISDINEIAYLQNLPSLRNLWLEENPCCERAGPNYRSIVLRA
LPNLKKLDNVEVTQQEVEDALRGGGVAAPEDEVYEDAYQQQQQSRRSSPQ
QILQQQQHSYPQHSPPPQQQYQQQQQQQQQQQRGCTTPTKEEYYQSDRPA
YPAHYRHSQTDLTEWEEHQQVPQVHHNPYGSQKQLHQPQRRSAGPEMTPY
RNGSARENGGEWDPEDRSRARRPEGRYSDGTSSLSASVMNHYSGYHRRPI
NRNSNILSAALCLVKELDYASLEVLEHAVRCRIDELANE*

GH13848.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14995-PH 389 CG14995-PH 1..389 1..389 2045 100 Plus
CG14995-PD 354 CG14995-PD 28..354 63..389 1730 100 Plus
CG14995-PG 362 CG14995-PG 28..362 63..389 1711 97.6 Plus
CG14995-PC 411 CG14995-PC 28..411 63..389 1641 84.9 Plus
CG14995-PI 419 CG14995-PI 28..419 63..389 1622 83.2 Plus