Clone GH13879 Report

Search the DGRC for GH13879

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:138
Well:79
Vector:pOT2
Associated Gene/TranscriptCG9331-RC
Protein status:GH13879.pep: gold
Preliminary Size:1500
Sequenced Size:1389

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9331 2001-01-01 Release 2 assignment
CG9331 2001-12-12 Blastp of sequenced clone
CG9331 2003-01-01 Sim4 clustering to Release 3
CG9331 2008-04-29 Release 5.5 accounting
CG9331 2008-08-15 Release 5.9 accounting
CG9331 2008-12-18 5.12 accounting

Clone Sequence Records

GH13879.complete Sequence

1389 bp (1389 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070510

> GH13879.complete
AGCAAACCAGTTGTGCGTCTTATACATACGCCGTAGGAGAGACTGAGACT
CACATCAGCTGCTCGGCGGCTTGAACGCCTACAGACATACATACATACGT
ACATACATATATAGGGAGAGATTTAGAGCGCGGATTATAATGCTAAACAG
GTTCATTGGTTTATCGGCTGCGATCGTGGGTCGGAGCAGTCGGATCAGCG
GCTTTCCGTTCTCGCCGCTCCTTAAAGCTGGAAATCAAAGCCAGAATCGC
ACCATGTCCGCTGGCAAGGCTTTCAAGGTCCTGGTGACACATCCCGAGGT
TCCCCAGGAGGGCATTGATCTGCTGAAGGAGAACTGCGAGATCGTCCAGG
TGCAGAGTGTTCCCATCAACCGGGCGGAGCTGCTGGAGAAAATCCGTGGC
GTGGATGGCGTTCTCTGGGGTGGACACGAACCCCTCAATGCCGAGGCCCT
CGATGCTGCCGGTCCCCAGCTGAAATCCATCTCCACCATGTCGGCGGGAA
TCGACTACGTCGATGTGCCGGAGGTAAAGAGACGTAAGATCCCGCTGGGA
CACACGCCCACCGTTCTCAACACCGCCGTGGCCGATTTGGCAGTGGGTCT
CCTGATCGCCGCCAGTCGCCGTTTTCACGAGGGTCGCAAGACCATCGACA
ATGACAAGTGGGAAAACTACCATCTTAACTGGCTGTTGGGCCAGGATATT
CGTGATTCCACCGTGGGATTCTACGGCTTTGGAGGCATTGGTCAGGCTAT
TGCCAAGCGTTTGTCTGGATTCGACATTGACAAGGTGCTGTACACCACCC
GTCGTCGTGTTCACAAGGAGATCGAGGAGGAGTTCAATGCCAAGAAAGTT
GACTTCGATACCCTTCTGGCCGAGAGTGACTTCGTAGTGATCGCTTCTCC
TTTGACGAAGGACACACAGGGCGTCTTTAATGCCACCGCCTTCAACAAGA
TGAAGCAGACTGCTGTGCTGGTTAACATTGCCAGGGGCAAAATCGTCAAC
CAGGATGACCTCTACGAGGCTTTGAAAGCCAACCGAATCTTTTCCGCCGG
ACTCGACGTCACGGATCCGGAACCATTGTCGCCCAAGGACAAGCTGCTGA
CGCTTGACAATGTTGTTGTCCTGCCCCATATTGGATCCGCCACGAAGCGC
ACCCGTGCCGACATGTCCACCATTGCTGCCCATAATGTGCTCCGCGGTTT
GGCTGGGGAGCCCATGTTGTCGCCCGCCTACTAGTAAATTCAAATGGGAA
ATATGGCTTTCTACCGCTAACCAGTTTGGAATGTCCGCCAAACAAAGTGC
GAAAGGCCGCCGATGACCTTGGCATGCCAGTAGATGTGAAAATAAAAAAA
ACAATTAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAA

GH13879.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9331.d 1554 CG9331.d 92..1456 1..1365 6825 100 Plus
CG9331-RC 1554 CG9331-RC 92..1456 1..1365 6825 100 Plus
CG9331.j 1604 CG9331.j 142..1506 1..1365 6825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20824173..20824593 231..651 2090 99.8 Plus
chr2L 23010047 chr2L 20825139..20825476 652..989 1675 99.7 Plus
chr2L 23010047 chr2L 20826002..20826250 1115..1363 1230 99.6 Plus
chr2L 23010047 chr2L 20823788..20824018 1..231 1155 100 Plus
chr2L 23010047 chr2L 20825538..20825663 990..1115 630 100 Plus
chr2L 23010047 chr2L 20830452..20830793 648..989 585 78.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:50:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20825667..20826087 231..651 2105 100 Plus
2L 23513712 2L 20826633..20826970 652..989 1690 100 Plus
2L 23513712 2L 20827496..20827746 1115..1365 1255 100 Plus
2L 23513712 2L 20825282..20825512 1..231 1155 100 Plus
2L 23513712 2L 20827032..20827157 990..1115 630 100 Plus
2L 23513712 2L 20831946..20832287 648..989 570 77.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20825667..20826087 231..651 2105 100 Plus
2L 23513712 2L 20826633..20826970 652..989 1690 100 Plus
2L 23513712 2L 20827496..20827746 1115..1365 1255 100 Plus
2L 23513712 2L 20825282..20825512 1..231 1155 100 Plus
2L 23513712 2L 20827032..20827157 990..1115 630 100 Plus
2L 23513712 2L 20831946..20832076 648..778 340 83.9 Plus
2L 23513712 2L 20832092..20832287 794..989 290 76.5 Plus
Blast to na_te.dros performed 2019-03-15 15:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 411..451 87..127 115 75.6 Plus
412 7567 412 412 7567bp 212..249 76..114 111 79.5 Plus
412 7567 412 412 7567bp 7265..7302 76..114 111 79.5 Plus

GH13879.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:26:50 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20826003..20826230 1116..1343 99   Plus
chr2L 20825139..20825476 652..989 99 -> Plus
chr2L 20824174..20824593 232..651 99 -> Plus
chr2L 20825538..20825663 990..1115 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:41:05 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RC 1..1095 140..1234 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:18:33 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RI 1..1095 140..1234 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:29:14 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RC 1..1095 140..1234 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:44:41 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RC 1..1095 140..1234 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:06:56 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RM 1..1095 140..1234 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:51:36 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RC 177..1519 1..1343 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:18:33 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RI 206..1548 1..1343 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:29:14 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RC 179..1521 1..1343 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:44:41 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RC 177..1519 1..1343 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:06:56 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RC 179..1521 1..1343 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:26:50 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20825282..20825512 1..231 100 -> Plus
2L 20825668..20826087 232..651 100 -> Plus
2L 20826633..20826970 652..989 100 -> Plus
2L 20827032..20827157 990..1115 100 -> Plus
2L 20827497..20827724 1116..1343 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:26:50 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20825282..20825512 1..231 100 -> Plus
2L 20825668..20826087 232..651 100 -> Plus
2L 20826633..20826970 652..989 100 -> Plus
2L 20827032..20827157 990..1115 100 -> Plus
2L 20827497..20827724 1116..1343 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:26:50 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20825282..20825512 1..231 100 -> Plus
2L 20825668..20826087 232..651 100 -> Plus
2L 20826633..20826970 652..989 100 -> Plus
2L 20827032..20827157 990..1115 100 -> Plus
2L 20827497..20827724 1116..1343 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:29:14 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20825282..20825512 1..231 100 -> Plus
arm_2L 20825668..20826087 232..651 100 -> Plus
arm_2L 20826633..20826970 652..989 100 -> Plus
arm_2L 20827032..20827157 990..1115 100 -> Plus
arm_2L 20827497..20827724 1116..1343 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:20:58 Download gff for GH13879.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20825282..20825512 1..231 100 -> Plus
2L 20825668..20826087 232..651 100 -> Plus
2L 20826633..20826970 652..989 100 -> Plus
2L 20827032..20827157 990..1115 100 -> Plus
2L 20827497..20827724 1116..1343 100   Plus

GH13879.pep Sequence

Translation from 139 to 1233

> GH13879.pep
MLNRFIGLSAAIVGRSSRISGFPFSPLLKAGNQSQNRTMSAGKAFKVLVT
HPEVPQEGIDLLKENCEIVQVQSVPINRAELLEKIRGVDGVLWGGHEPLN
AEALDAAGPQLKSISTMSAGIDYVDVPEVKRRKIPLGHTPTVLNTAVADL
AVGLLIAASRRFHEGRKTIDNDKWENYHLNWLLGQDIRDSTVGFYGFGGI
GQAIAKRLSGFDIDKVLYTTRRRVHKEIEEEFNAKKVDFDTLLAESDFVV
IASPLTKDTQGVFNATAFNKMKQTAVLVNIARGKIVNQDDLYEALKANRI
FSAGLDVTDPEPLSPKDKLLTLDNVVVLPHIGSATKRTRADMSTIAAHNV
LRGLAGEPMLSPAY*

GH13879.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20908-PA 361 GF20908-PA 1..361 1..364 1707 88.5 Plus
Dana\GF20930-PA 327 GF20930-PA 1..327 39..364 1257 70.9 Plus
Dana\GF20919-PA 324 GF20919-PA 4..324 43..364 961 52 Plus
Dana\GF16345-PA 325 GF16345-PA 7..321 47..361 670 46.8 Plus
Dana\GF15130-PA 332 GF15130-PA 39..295 80..339 217 22.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21256-PA 364 GG21256-PA 1..364 1..364 1886 97.3 Plus
Dere\GG21258-PA 327 GG21258-PA 1..327 39..364 1296 73.7 Plus
Dere\GG21257-PA 326 GG21257-PA 4..326 41..364 959 53.5 Plus
Dere\GG13007-PA 325 GG13007-PA 6..319 46..359 679 47 Plus
Dere\GG10320-PA 332 GG10320-PA 7..307 46..351 226 22.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10587-PA 356 GH10587-PA 23..356 30..364 1456 80.3 Plus
Dgri\GH10588-PA 325 GH10588-PA 1..325 39..364 992 55.7 Plus
Dgri\GH18259-PA 324 GH18259-PA 6..319 46..359 649 46.3 Plus
Dgri\GH13534-PA 332 GH13534-PA 14..295 54..339 230 24 Plus
Dgri\CtBP-PA 492 GH18368-PA 92..341 111..356 193 26.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9331-PI 364 CG9331-PI 1..364 1..364 1849 100 Plus
CG9331-PH 364 CG9331-PH 1..364 1..364 1849 100 Plus
CG9331-PM 364 CG9331-PM 1..364 1..364 1849 100 Plus
CG9331-PC 364 CG9331-PC 1..364 1..364 1849 100 Plus
CG9331-PL 364 CG9331-PL 32..364 32..364 1698 100 Plus
CG9331-PA 364 CG9331-PA 32..364 32..364 1698 100 Plus
CG9331-PK 326 CG9331-PK 1..326 39..364 1662 100 Plus
CG9331-PJ 326 CG9331-PJ 1..326 39..364 1662 100 Plus
CG9331-PG 326 CG9331-PG 1..326 39..364 1662 100 Plus
CG9331-PF 326 CG9331-PF 1..326 39..364 1662 100 Plus
CG9331-PB 326 CG9331-PB 1..326 39..364 1662 100 Plus
CG9331-PD 326 CG9331-PD 1..326 39..364 1662 100 Plus
CG31674-PB 327 CG31674-PB 1..327 39..364 1251 73.1 Plus
CG31674-PA 327 CG31674-PA 1..327 39..364 1251 73.1 Plus
CG31673-PA 326 CG31673-PA 4..326 41..364 912 52.9 Plus
CG31673-PB 325 CG31673-PB 4..325 41..364 896 52.6 Plus
CG1236-PA 347 CG1236-PA 28..343 46..361 728 47 Plus
CG6287-PA 332 CG6287-PA 7..307 46..351 237 23.1 Plus
CtBP-PI 379 CG7583-PI 92..338 111..356 186 26.8 Plus
CtBP-PF 383 CG7583-PF 92..338 111..356 186 26.8 Plus
CtBP-PA 386 CG7583-PA 92..341 111..356 186 26.7 Plus
CtBP-PB 386 CG7583-PB 92..341 111..356 186 26.7 Plus
CtBP-PD 386 CG7583-PD 92..341 111..356 186 26.7 Plus
CtBP-PC 386 CG7583-PC 92..341 111..356 186 26.7 Plus
CtBP-PG 473 CG7583-PG 92..338 111..356 186 26.8 Plus
CtBP-PJ 476 CG7583-PJ 92..338 111..356 186 26.8 Plus
CtBP-PE 476 CG7583-PE 92..341 111..356 186 26.7 Plus
CtBP-PH 481 CG7583-PH 92..338 111..356 186 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23165-PA 401 GI23165-PA 29..401 33..364 1325 67.1 Plus
Dmoj\GI23143-PA 357 GI23143-PA 34..357 40..364 1058 63.1 Plus
Dmoj\GI23154-PA 352 GI23154-PA 34..352 41..364 977 58 Plus
Dmoj\GI23658-PA 324 GI23658-PA 7..319 47..359 657 46.2 Plus
Dmoj\GI18148-PA 332 GI18148-PA 14..295 54..339 232 24.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18523-PA 362 GL18523-PA 1..362 1..364 1645 84.6 Plus
Dper\GL18524-PA 330 GL18524-PA 7..330 40..364 967 54.6 Plus
Dper\GL24519-PA 304 GL24519-PA 6..300 46..361 539 41.3 Plus
Dper\GL18582-PA 332 GL18582-PA 14..295 54..339 231 24 Plus
Dper\CtBP-PA 482 GL24381-PA 92..341 111..356 194 26.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21708-PA 362 GA21708-PA 1..362 1..364 1637 84.6 Plus
Dpse\GA16384-PA 330 GA16384-PA 7..330 40..364 967 54.3 Plus
Dpse\GA11580-PA 325 GA11580-PA 6..319 46..359 616 44.4 Plus
Dpse\GA19489-PA 332 GA19489-PA 14..295 54..339 231 24 Plus
Dpse\GA20456-PC 382 GA20456-PC 92..341 111..356 194 26.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23374-PA 364 GM23374-PA 1..364 1..364 1916 99.2 Plus
Dsec\GM23376-PA 327 GM23376-PA 1..327 39..364 1295 73.1 Plus
Dsec\GM10835-PA 325 GM10835-PA 6..319 46..359 671 47 Plus
Dsec\GM23375-PA 180 GM23375-PA 1..180 183..364 515 52.7 Plus
Dsec\GM11122-PA 332 GM11122-PA 7..307 46..351 231 23.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24283-PA 364 GD24283-PA 1..364 1..364 1915 98.9 Plus
Dsim\GD24286-PA 327 GD24286-PA 1..327 39..364 1298 73.4 Plus
Dsim\GD24284-PA 326 GD24284-PA 4..326 41..364 946 52.9 Plus
Dsim\GD19816-PA 307 GD19816-PA 15..301 72..359 626 47.9 Plus
Dsim\GD22186-PA 332 GD22186-PA 7..307 46..351 228 22.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23653-PA 359 GJ23653-PA 30..359 34..364 1432 84 Plus
Dvir\GJ23664-PA 325 GJ23664-PA 1..325 39..364 920 55.4 Plus
Dvir\GJ23501-PA 324 GJ23501-PA 7..319 47..359 702 46.5 Plus
Dvir\GJ14930-PA 332 GJ14930-PA 14..295 54..339 223 23.3 Plus
Dvir\CtBP-PA 502 GJ10351-PA 92..341 111..356 193 26.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15435-PA 326 GK15435-PA 1..326 39..364 1537 86.5 Plus
Dwil\GK15437-PA 329 GK15437-PA 3..329 40..364 1192 67.6 Plus
Dwil\GK15436-PA 326 GK15436-PA 3..326 40..364 978 54.3 Plus
Dwil\GK13923-PA 324 GK13923-PA 6..318 47..359 733 46.2 Plus
Dwil\GK15239-PA 332 GK15239-PA 14..295 54..339 237 23.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12350-PA 364 GE12350-PA 1..364 1..364 1879 96.7 Plus
Dyak\GE12352-PA 327 GE12352-PA 1..327 39..364 1298 73.7 Plus
Dyak\GE12351-PA 326 GE12351-PA 4..326 41..364 982 54.5 Plus
Dyak\GE10159-PA 325 GE10159-PA 6..319 46..359 693 47.9 Plus
Dyak\GE12961-PA 332 GE12961-PA 4..307 43..351 232 23.2 Plus

GH13879.hyp Sequence

Translation from 139 to 1233

> GH13879.hyp
MLNRFIGLSAAIVGRSSRISGFPFSPLLKAGNQSQNRTMSAGKAFKVLVT
HPEVPQEGIDLLKENCEIVQVQSVPINRAELLEKIRGVDGVLWGGHEPLN
AEALDAAGPQLKSISTMSAGIDYVDVPEVKRRKIPLGHTPTVLNTAVADL
AVGLLIAASRRFHEGRKTIDNDKWENYHLNWLLGQDIRDSTVGFYGFGGI
GQAIAKRLSGFDIDKVLYTTRRRVHKEIEEEFNAKKVDFDTLLAESDFVV
IASPLTKDTQGVFNATAFNKMKQTAVLVNIARGKIVNQDDLYEALKANRI
FSAGLDVTDPEPLSPKDKLLTLDNVVVLPHIGSATKRTRADMSTIAAHNV
LRGLAGEPMLSPAY*

GH13879.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9331-PI 364 CG9331-PI 1..364 1..364 1849 100 Plus
CG9331-PH 364 CG9331-PH 1..364 1..364 1849 100 Plus
CG9331-PM 364 CG9331-PM 1..364 1..364 1849 100 Plus
CG9331-PC 364 CG9331-PC 1..364 1..364 1849 100 Plus
CG9331-PL 364 CG9331-PL 32..364 32..364 1698 100 Plus