Clone GH13901 Report

Search the DGRC for GH13901

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:139
Well:1
Vector:pOT2
Associated Gene/TranscriptCG9010-RA
Protein status:GH13901.pep: gold
Preliminary Size:1205
Sequenced Size:1223

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9010 2001-01-01 Release 2 assignment
CG9010 2001-10-10 Blastp of sequenced clone
CG9010 2003-01-01 Sim4 clustering to Release 3
CG9010 2008-04-29 Release 5.5 accounting
CG9010 2008-08-15 Release 5.9 accounting
CG9010 2008-12-18 5.12 accounting

Clone Sequence Records

GH13901.complete Sequence

1223 bp (1223 high quality bases) assembled on 2001-10-10

GenBank Submission: AY089505

> GH13901.complete
AATACGTATAAAAAACCAACAAAATTTTCAACACTGCAAGTCGAATTCCA
TTATGTCCGGTATTGGCATCAATGGCTTTGGCCGAATCGGTCGCATGTTT
GCCCGCCAGGCTCTAGTTCGCAAAGATGTCAAGATCGTGGCAATCAACGA
TCCCTCACTGGATCCCAAGTATCTGGCCTACATGCTGCGATACGACTCCA
CTCATGGACAGTTCAATCAGAAGATCTCTGTCGACGGGAACAATCTTGTT
GTTAATGGCAAGAAGATCCAGCTGCTTAAGGAGTCGGACGTCAAGAAGAT
TAAATGGTGCGACCTGGGCGTGCATACGGTGGTGGAGTGCTCCGGTAGGT
TTACCACCCTGAAAGCCTGTCAAGGTCACTTGGATAGTGGGGCCAAAAAG
GTGGTCATATCGGCACCATCTGCCGATGCTCCGATGTTTGTGTGCGGAGT
GAATCTTGAGGCATACAAGCCGGGCACAGCAATCATCTCGAATGCCTCAT
GCACAACCAATTGCCTGGCGCCGCTGGCCAAGGTGGTGCACGATAACTTT
GAAATATGTGAGGGCCTTATGACCACCGTTCATGCGGCTACAGCTACCCA
AAAGATCATCGACGGACCCAGCAGCAAACTCTGGCGGGATGGACGCAGTG
GCATGACCAACATCATACCCGCATCCACGGGAGCCGCTAAAGCCGTCGGC
AAGGTGATTCCGGATCTAAACGGGAAGCTAACGGGTATGGCTTTCCGTGT
ACCAGTTCCCAATGTCTCGGTGGTGGACCTCACCTGTAGGCTTTCTAAGC
CCGCCAAAATGGACGATATCAAGAAGTGCATAAAGGCTGCATCCAAATGC
GAAATGAAGGGAATCCTGGGGTATGTGGAGGAGGAGGTGGTGTCCACCGA
TTTTAACGGCTCACGATTTGCATCCGTCTTTGATGCCAAGGCCTGTATTG
CCCTAAACGATAACTTCGTCAAGTTGATCAGTTGGTACGATAACGAGACC
GGATATTCCTGCCGTCTCCTTGACCTAGTTCTCTATGCCCAGTTGGTCGA
CCAATGCGATGCGAAGGAAAAGGGTGCTTGCTAGATGGAAGATCCATGTA
AGAAAAAAGGATGATCCCTGCAAGAAATAGGAAGATCCTTGCAAGAACAA
GAAATAGGAAACTCTTAGAAAAGAATTAAAAATTTTTTTAACCAAGTCTA
GATTTAAAAAAAAAAAAAAAAAA

GH13901.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9010-RA 1205 CG9010-RA 1..1205 1..1205 6025 100 Plus
Gapdh2-RB 1359 Gapdh2-RB 464..623 486..645 245 76.8 Plus
Gapdh2-RA 1500 Gapdh2-RA 573..732 486..645 245 76.8 Plus
Gapdh2-RB 1359 Gapdh2-RB 354..449 376..471 165 78.1 Plus
Gapdh2-RA 1500 Gapdh2-RA 463..558 376..471 165 78.1 Plus
Gapdh2-RB 1359 Gapdh2-RB 910..975 932..997 150 81.8 Plus
Gapdh2-RA 1500 Gapdh2-RA 1019..1084 932..997 150 81.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12846137..12847341 1205..1 5980 99.8 Minus
chrX 22417052 chrX 15758510..15758908 376..774 420 73.7 Plus
chr2R 21145070 chr2R 3679712..3680104 784..392 405 73.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:50:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16958942..16960147 1206..1 6030 100 Minus
X 23542271 X 15868656..15869054 376..774 420 73.7 Plus
2R 25286936 2R 7792392..7792784 784..392 405 73.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16960141..16961346 1206..1 6030 100 Minus
X 23527363 X 15876864..15877023 486..645 245 76.8 Plus
2R 25260384 2R 7793591..7793716 784..659 195 76.9 Minus
X 23527363 X 15876754..15876849 376..471 165 78.1 Plus
X 23527363 X 15877310..15877375 932..997 150 81.8 Plus
2R 25260384 2R 7793730..7793815 645..560 145 77.9 Minus
2R 25260384 2R 7793841..7793889 534..486 140 85.7 Minus
Blast to na_te.dros performed on 2019-03-15 21:47:45 has no hits.

GH13901.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:48:41 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12846137..12847341 1..1205 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:41:07 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 1..1032 53..1084 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:12 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 1..1032 53..1084 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:58:11 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 1..1032 53..1084 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:04 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 1..1032 53..1084 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:45 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 1..1032 53..1084 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:23 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 1..1205 1..1205 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:12 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 1..1205 1..1205 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:58:11 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 49..1253 1..1205 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:04 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 1..1205 1..1205 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:45 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG9010-RA 49..1253 1..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:41 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16958943..16960147 1..1205 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:41 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16958943..16960147 1..1205 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:41 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16958943..16960147 1..1205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:58:11 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12846448..12847652 1..1205 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:56 Download gff for GH13901.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16960142..16961346 1..1205 100   Minus

GH13901.hyp Sequence

Translation from 1 to 1083

> GH13901.hyp
IRIKNQQNFQHCKSNSIMSGIGINGFGRIGRMFARQALVRKDVKIVAIND
PSLDPKYLAYMLRYDSTHGQFNQKISVDGNNLVVNGKKIQLLKESDVKKI
KWCDLGVHTVVECSGRFTTLKACQGHLDSGAKKVVISAPSADAPMFVCGV
NLEAYKPGTAIISNASCTTNCLAPLAKVVHDNFEICEGLMTTVHAATATQ
KIIDGPSSKLWRDGRSGMTNIIPASTGAAKAVGKVIPDLNGKLTGMAFRV
PVPNVSVVDLTCRLSKPAKMDDIKKCIKAASKCEMKGILGYVEEEVVSTD
FNGSRFASVFDAKACIALNDNFVKLISWYDNETGYSCRLLDLVLYAQLVD
QCDAKEKGAC*

GH13901.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9010-PA 343 CG9010-PA 1..343 18..360 1787 100 Plus
Gapdh2-PC 332 CG8893-PC 1..332 18..350 1114 64.9 Plus
Gapdh2-PA 332 CG8893-PA 1..332 18..350 1114 64.9 Plus
Gapdh1-PB 332 CG12055-PB 1..332 18..350 1114 65.2 Plus
Gapdh1-PA 332 CG12055-PA 1..332 18..350 1114 65.2 Plus

GH13901.pep Sequence

Translation from 52 to 1083

> GH13901.pep
MSGIGINGFGRIGRMFARQALVRKDVKIVAINDPSLDPKYLAYMLRYDST
HGQFNQKISVDGNNLVVNGKKIQLLKESDVKKIKWCDLGVHTVVECSGRF
TTLKACQGHLDSGAKKVVISAPSADAPMFVCGVNLEAYKPGTAIISNASC
TTNCLAPLAKVVHDNFEICEGLMTTVHAATATQKIIDGPSSKLWRDGRSG
MTNIIPASTGAAKAVGKVIPDLNGKLTGMAFRVPVPNVSVVDLTCRLSKP
AKMDDIKKCIKAASKCEMKGILGYVEEEVVSTDFNGSRFASVFDAKACIA
LNDNFVKLISWYDNETGYSCRLLDLVLYAQLVDQCDAKEKGAC*

GH13901.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13438-PA 771 GF13438-PA 1..338 1..339 1442 77.3 Plus
Dana\GF17051-PA 332 GF17051-PA 1..332 1..333 1151 65.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22232-PA 351 GG22232-PA 1..341 1..343 1706 92.7 Plus
Dere\GG10711-PA 332 GG10711-PA 1..332 1..333 1155 65.2 Plus
Dere\GG17924-PA 332 GG17924-PA 1..332 1..333 1149 64.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22833-PA 352 GH22833-PA 1..340 1..340 1387 75.9 Plus
Dgri\GH21340-PA 332 GH21340-PA 1..332 1..333 1155 65.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9010-PA 343 CG9010-PA 1..343 1..343 1787 100 Plus
Gapdh2-PC 332 CG8893-PC 1..332 1..333 1114 64.9 Plus
Gapdh2-PA 332 CG8893-PA 1..332 1..333 1114 64.9 Plus
Gapdh1-PB 332 CG12055-PB 1..332 1..333 1114 65.2 Plus
Gapdh1-PA 332 CG12055-PA 1..332 1..333 1114 65.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21211-PA 334 GI21211-PA 3..334 4..335 1361 75.9 Plus
Dmoj\GI20756-PA 332 GI20756-PA 1..332 1..333 1154 65.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10495-PA 364 GL10495-PA 1..339 1..339 1491 81.1 Plus
Dper\GL10260-PA 366 GL10260-PA 1..327 1..328 1154 65.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21475-PA 364 GA21475-PA 1..339 1..339 1487 80.8 Plus
Dpse\Gapdh2-PA 332 GA21397-PA 1..332 1..333 1157 65.2 Plus
Dpse\GA27234-PA 170 GA27234-PA 110..165 272..328 154 57.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20020-PA 344 GM20020-PA 1..343 1..343 1763 96.2 Plus
Dsec\GM22592-PA 332 GM22592-PA 1..332 1..333 1146 64.6 Plus
Dsec\GM20757-PA 161 GM20757-PA 1..161 173..333 605 72 Plus
Dsec\GM20756-PA 149 GM20756-PA 1..149 1..150 446 54.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25506-PA 344 GD25506-PA 1..343 1..343 1765 96.2 Plus
Dsim\GD17248-PA 147 GD17248-PA 1..139 1..140 421 55 Plus
Dsim\GD10219-PA 86 GD10219-PA 4..86 251..333 260 62.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20812-PA 346 GJ20812-PA 1..340 1..340 1411 75.6 Plus
Dvir\GJ20492-PA 332 GJ20492-PA 1..332 1..333 1144 64.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21310-PA 428 GK21310-PA 1..340 1..338 1446 78.2 Plus
Dwil\GK17768-PA 332 GK17768-PA 1..332 1..333 1154 65.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14229-PA 350 GE14229-PA 3..340 4..343 1703 93.8 Plus
Dyak\Gapdh1-PA 332 GE23629-PA 1..332 1..333 1155 65.2 Plus
Dyak\GE17231-PA 332 GE17231-PA 1..332 1..333 1154 64.9 Plus