BDGP Sequence Production Resources |
Search the DGRC for GH13919
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 139 |
Well: | 19 |
Vector: | pOT2 |
Associated Gene/Transcript | SdhA-RA |
Protein status: | GH13919.pep: gold |
Preliminary Size: | 2449 |
Sequenced Size: | 2660 |
Gene | Date | Evidence |
---|---|---|
CG17246 | 2001-01-01 | Release 2 assignment |
CG17246 | 2001-07-04 | Blastp of sequenced clone |
CG17246 | 2003-01-01 | Sim4 clustering to Release 3 |
Scs-fp | 2008-04-29 | Release 5.5 accounting |
Scs-fp | 2008-08-15 | Release 5.9 accounting |
Scs-fp | 2008-12-18 | 5.12 accounting |
2660 bp (2660 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051472
> GH13919.complete CGGCAGTTCACACACAACATTTGAAAGTTTGTAAACTTTTCCTTTTTCGA TCACATAGACACATCGATACACGTAGTTATTTGTTTTTATTTTGTACCAA CACCAAACACCCCATCTTACAAGCGCGTAAAACCTCGTTTTCGGTCCAAT CTCTTGCAGAATCTTGCAGTAGAACCTCACAGCCCAGCCAAACATGTCCG GAATCATGCGTGTGCCATCGATTTTGGCCAAAAATGCAGTCGCCTCCATG CAACGTGCCGCAGCCGTTGGAGTGCAGCGCAGTTACCACATCACACACGG CCGCCAGCAGGCCTCGGCGGCGAATCCGGACAAGATATCGAAGCAGTACC CGGTGGTGGATCACGCCTACGATGCGATCGTCGTGGGAGCAGGAGGAGCC GGCTTGCGGGCGGCTTTTGGCCTGGTGGCTGAGGGATTTCGCACGGCGGT GATCACCAAGCTTTTCCCCACCCGCTCGCACACGATCGCCGCCCAGGGCG GTATCAATGCCGCTCTCGGCAACATGGAGGAGGACGACTGGAAGTGGCAC ATGTACGACACGGTCAAGGGCTCCGATTGGCTGGGCGACCAGGATGCCAT CCACTACATGACCCGCGAGGCGCCCAAGGCTGTCATTGAGCTGGAGAACT ACGGCATGCCCTTCTCGCGTACCCAGGACGGTAAGATCTACCAGCGCGCC TTCGGTGGACAGAGTCTGAAGTTCGGCAAGGGCGGACAGGCCCATCGCTG CTGTGCTGTGGCTGATCGTACTGGTCACTCGCTGCTGCACACGCTATACG GTCAATCGCTGAGCTACGACTGCAACTACTTTGTGGAGTACTTTGCCCTG GATCTGATCTTCGAGGACGGCGAGTGCCGTGGTGTGCTGGCCCTGAACCT GGAGGATGGCACACTGCACCGATTCCGCGCTAAGAACACGGTCATTGCCA CCGGTGGATATGGACGAGCATTCTTCTCCTGCACCTCGGCGCACACATGT ACCGGTGACGGTACTGCTATGGTTGCACGCCAGGGACTGCCCTCTCAGGA TCTGGAGTTCGTGCAGTTCCATCCTACTGGCATCTACGGCGCCGGATGTC TCATCACCGAGGGCTGCCGCGGTGAGGGTGGTTACCTGATCAACGGTAAT GGTGAGCGCTTCATGGAGCGCTATGCTCCTGTGGCCAAGGATCTGGCCTC TCGCGACGTCGTCTCGCGGTCGATGACCATCGAGATCATGGAGGGTCGTG GCGCTGGACCCGAGAAGGATCACGTGTACCTGCAACTGCACCACTTGCCG CCCAAGCAGCTCGCGGAGCGTCTGCCTGGCATCTCCGAGACCGCCATGAT CTTCGCCGGTGTTGATGTGACCCGTGAGCCCATCCCCGTGTTGCCCACCG TGCATTACAACATGGGCGGTGTGCCGACTAACTATCGCGGCCAGGTAATC ACCATTGACAAGGATGGCAAGGATGTGATTGTGCCGGGACTGTATGCCGC TGGTGAGGCTGCTTCCAGCTCGGTGCATGGTGCCAACCGTCTGGGTGCCA ACTCTCTGCTGGATCTGGTGGTCTTCGGACGTGCATGCGCCAAGACCATC GCCGAGCTGAATAAGCCTGGTGCACCGGCTCCCACCCTCAAGGAAAACGC TGGCGAGGCCTCTGTTGCTAACCTCGATAAGCTGCGCCATGCCAACGGCC AGATCACCACCGCCGATCTGCGTCTGAAGATGCAGAAGACCATGCAGCAT CATGCTGCTGTGTTCCGCGATGGCCCCATCCTGCAGGACGGTGTGAACAA GATGAAGGAGATCTACAAGCAGTTCAAGGACATCAAGGTTGTCGATAGGT CGCTTATCTGGAACTCCGATCTGGTGGAGACGCTGGAGCTGCAGAATCTG TTGGCCAATGCCCAGATGACTATTGTGAGCGCTGAGGCGCGCAAGGAATC GCGAGGTGCCCACGCCCGCGAGGACTTCAAGGTTCGCGAGGATGAATACG ATTTCAGCAAGCCCCTGGATGGTCAGCAGAAGAAGCCCATGGATCAGCAC TGGCGCAAGCACACGCTCTCGTGGGTGTGCAATGACAACGGAGACATTAC GCTGGACTACAGAAACGTGATCGATACCACGCTGGACAACGAAGTCTCTA CTGTTCCACCAGCGATTCGCTCCTATTAAATCAAGACTTGGAGTTGCAGA ACACCCGCATATACACCCCATACCATCACTCGTACGGATGTCTACTTAAA CGTCTTTGTGGGCGCCAGTAAATAAATTTTGTCAAATCGCCAAATGAGCC GCAATATGCTACCAATTGGTAACTGGGAACTCGGCAGCGGTTCCGGGCAT TTTGTGATGAAACGTAAATCCAGATTTTCTATACACCTATAAATCTTTCA AATCCTTATTACTACTCCGCTGATTCTACTTAGTTTCACTGTAAGCTGCC CTCCATTTGGTTACTGTTTGGTTGTCGGTTATTTACATTATTACATAAGC GAAAAATGTGTGTGAGTAGACAACGAGTTAGGTCTGAGGCGATATTGACT ACGCAGCCTGTTTAGAAGCAAATGAAAACAAATCCAACTACACTTTTCTA GTATTTGTTAAACTTATTAAATTATTAAAACGAAAACGTGTAAAAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SdhA-RA | 2839 | SdhA-RA | 37..2693 | 1..2657 | 13255 | 99.9 | Plus |
SdhA-RC | 2752 | SdhA-RC | 109..2606 | 160..2657 | 12460 | 99.9 | Plus |
SdhA-RB | 2819 | SdhA-RB | 176..2673 | 160..2657 | 12460 | 99.9 | Plus |
SdhA-RC | 2752 | SdhA-RC | 37..108 | 1..72 | 360 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 15280016..15281616 | 1850..250 | 7990 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 15279109..15279750 | 2641..2000 | 3180 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 15282854..15283103 | 250..1 | 1250 | 100 | Minus |
chr2R | 21145070 | chr2R | 15279810..15279963 | 2000..1847 | 770 | 100 | Minus |
chr3L | 24539361 | chr3L | 11914506..11915376 | 1234..370 | 540 | 71.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 19392844..19394444 | 1850..250 | 8005 | 100 | Minus |
2R | 25286936 | 2R | 19391921..19392578 | 2657..2000 | 3260 | 99.7 | Minus |
2R | 25286936 | 2R | 19395687..19395936 | 250..1 | 1250 | 100 | Minus |
2R | 25286936 | 2R | 19392638..19392791 | 2000..1847 | 770 | 100 | Minus |
3L | 28110227 | 3L | 11923681..11924551 | 1234..370 | 540 | 71.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 19394043..19395643 | 1850..250 | 8005 | 100 | Minus |
2R | 25260384 | 2R | 19393120..19393777 | 2657..2000 | 3260 | 99.6 | Minus |
2R | 25260384 | 2R | 19396886..19397135 | 250..1 | 1250 | 100 | Minus |
2R | 25260384 | 2R | 19393837..19393990 | 2000..1847 | 770 | 100 | Minus |
3L | 28103327 | 3L | 11917325..11917651 | 696..370 | 450 | 75.8 | Minus |
3L | 28103327 | 3L | 11916902..11916967 | 1113..1048 | 210 | 87.8 | Minus |
3L | 28103327 | 3L | 11916781..11916855 | 1234..1160 | 150 | 80 | Minus |
3L | 28103327 | 3L | 11916104..11916156 | 1911..1859 | 145 | 84.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 15279109..15279750 | 2000..2641 | 99 | <- | Minus |
chr2R | 15279811..15279961 | 1849..1999 | 100 | <- | Minus |
chr2R | 15280018..15281615 | 251..1848 | 99 | <- | Minus |
chr2R | 15282854..15283103 | 1..250 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scs-fp-RA | 1..1986 | 194..2179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhA-RA | 1..1986 | 194..2179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhA-RB | 1..1986 | 194..2179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scs-fp-RA | 1..1986 | 194..2179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhA-RB | 1..1986 | 194..2179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scs-fp-RA | 1..2641 | 1..2641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhA-RA | 1..2641 | 1..2641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhA-RA | 36..2676 | 1..2641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scs-fp-RA | 1..2641 | 1..2641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SdhA-RA | 36..2676 | 1..2641 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19391937..19392578 | 2000..2641 | 100 | <- | Minus |
2R | 19392639..19392789 | 1849..1999 | 100 | <- | Minus |
2R | 19392846..19394443 | 251..1848 | 100 | <- | Minus |
2R | 19395687..19395936 | 1..250 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19391937..19392578 | 2000..2641 | 100 | <- | Minus |
2R | 19392639..19392789 | 1849..1999 | 100 | <- | Minus |
2R | 19392846..19394443 | 251..1848 | 100 | <- | Minus |
2R | 19395687..19395936 | 1..250 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19391937..19392578 | 2000..2641 | 100 | <- | Minus |
2R | 19392639..19392789 | 1849..1999 | 100 | <- | Minus |
2R | 19392846..19394443 | 251..1848 | 100 | <- | Minus |
2R | 19395687..19395936 | 1..250 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 15279442..15280083 | 2000..2641 | 100 | <- | Minus |
arm_2R | 15280144..15280294 | 1849..1999 | 100 | <- | Minus |
arm_2R | 15280351..15281948 | 251..1848 | 100 | <- | Minus |
arm_2R | 15283192..15283441 | 1..250 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19393136..19393777 | 2000..2641 | 100 | <- | Minus |
2R | 19393838..19393988 | 1849..1999 | 100 | <- | Minus |
2R | 19394045..19395642 | 251..1848 | 100 | <- | Minus |
2R | 19396886..19397135 | 1..250 | 100 | Minus |
Translation from 193 to 2178
> GH13919.pep MSGIMRVPSILAKNAVASMQRAAAVGVQRSYHITHGRQQASAANPDKISK QYPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAA QGGINAALGNMEEDDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIEL ENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHT LYGQSLSYDCNYFVEYFALDLIFEDGECRGVLALNLEDGTLHRFRAKNTV IATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGA GCLITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIME GRGAGPEKDHVYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVL PTVHYNMGGVPTNYRGQVITIDKDGKDVIVPGLYAAGEAASSSVHGANRL GANSLLDLVVFGRACAKTIAELNKPGAPAPTLKENAGEASVANLDKLRHA NGQITTADLRLKMQKTMQHHAAVFRDGPILQDGVNKMKEIYKQFKDIKVV DRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHAREDFKVRED EYDFSKPLDGQQKKPMDQHWRKHTLSWVCNDNGDITLDYRNVIDTTLDNE VSTVPPAIRSY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12611-PA | 661 | GF12611-PA | 1..661 | 1..661 | 3369 | 95.2 | Plus |
Dana\GF24501-PA | 645 | GF24501-PA | 4..645 | 10..661 | 2141 | 62.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20911-PA | 661 | GG20911-PA | 1..661 | 1..661 | 3567 | 99.7 | Plus |
Dere\GG13871-PA | 651 | GG13871-PA | 27..651 | 39..661 | 2152 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22974-PA | 667 | GH22974-PA | 1..667 | 1..661 | 3210 | 88.2 | Plus |
Dgri\GH16714-PA | 644 | GH16714-PA | 13..644 | 27..661 | 2242 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SdhA-PA | 661 | CG17246-PA | 1..661 | 1..661 | 3468 | 100 | Plus |
SdhA-PC | 661 | CG17246-PC | 1..661 | 1..661 | 3468 | 100 | Plus |
SdhA-PB | 661 | CG17246-PB | 1..661 | 1..661 | 3468 | 100 | Plus |
SdhAL-PA | 651 | CG5718-PA | 27..651 | 39..661 | 2182 | 63.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18459-PA | 666 | GI18459-PA | 1..666 | 1..661 | 3210 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11254-PA | 661 | GL11254-PA | 1..661 | 1..661 | 3316 | 94.1 | Plus |
Dper\GL25074-PA | 590 | GL25074-PA | 25..590 | 35..661 | 1806 | 56.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14410-PA | 661 | GA14410-PA | 1..661 | 1..661 | 3316 | 94.1 | Plus |
Dpse\GA19081-PA | 648 | GA19081-PA | 25..648 | 35..661 | 2153 | 63.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19835-PA | 636 | GM19835-PA | 1..636 | 1..661 | 3382 | 95.5 | Plus |
Dsec\GM24693-PA | 651 | GM24693-PA | 39..651 | 51..661 | 2166 | 64.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25325-PA | 657 | GD25325-PA | 1..657 | 1..661 | 3511 | 98.6 | Plus |
Dsim\GD12763-PA | 612 | GD12763-PA | 39..612 | 51..661 | 1945 | 59.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21546-PA | 665 | GJ21546-PA | 1..665 | 1..661 | 3260 | 89.6 | Plus |
Dvir\GJ11663-PA | 651 | GJ11663-PA | 9..651 | 4..661 | 2173 | 60.9 | Plus |
Translation from 193 to 2178
> GH13919.hyp MSGIMRVPSILAKNAVASMQRAAAVGVQRSYHITHGRQQASAANPDKISK QYPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAA QGGINAALGNMEEDDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIEL ENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHT LYGQSLSYDCNYFVEYFALDLIFEDGECRGVLALNLEDGTLHRFRAKNTV IATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGA GCLITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIME GRGAGPEKDHVYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVL PTVHYNMGGVPTNYRGQVITIDKDGKDVIVPGLYAAGEAASSSVHGANRL GANSLLDLVVFGRACAKTIAELNKPGAPAPTLKENAGEASVANLDKLRHA NGQITTADLRLKMQKTMQHHAAVFRDGPILQDGVNKMKEIYKQFKDIKVV DRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHAREDFKVRED EYDFSKPLDGQQKKPMDQHWRKHTLSWVCNDNGDITLDYRNVIDTTLDNE VSTVPPAIRSY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SdhA-PA | 661 | CG17246-PA | 1..661 | 1..661 | 3468 | 100 | Plus |
SdhA-PC | 661 | CG17246-PC | 1..661 | 1..661 | 3468 | 100 | Plus |
SdhA-PB | 661 | CG17246-PB | 1..661 | 1..661 | 3468 | 100 | Plus |
CG5718-PA | 651 | CG5718-PA | 27..651 | 39..661 | 2182 | 63.7 | Plus |