Clone GH13919 Report

Search the DGRC for GH13919

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:139
Well:19
Vector:pOT2
Associated Gene/TranscriptSdhA-RA
Protein status:GH13919.pep: gold
Preliminary Size:2449
Sequenced Size:2660

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17246 2001-01-01 Release 2 assignment
CG17246 2001-07-04 Blastp of sequenced clone
CG17246 2003-01-01 Sim4 clustering to Release 3
Scs-fp 2008-04-29 Release 5.5 accounting
Scs-fp 2008-08-15 Release 5.9 accounting
Scs-fp 2008-12-18 5.12 accounting

Clone Sequence Records

GH13919.complete Sequence

2660 bp (2660 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051472

> GH13919.complete
CGGCAGTTCACACACAACATTTGAAAGTTTGTAAACTTTTCCTTTTTCGA
TCACATAGACACATCGATACACGTAGTTATTTGTTTTTATTTTGTACCAA
CACCAAACACCCCATCTTACAAGCGCGTAAAACCTCGTTTTCGGTCCAAT
CTCTTGCAGAATCTTGCAGTAGAACCTCACAGCCCAGCCAAACATGTCCG
GAATCATGCGTGTGCCATCGATTTTGGCCAAAAATGCAGTCGCCTCCATG
CAACGTGCCGCAGCCGTTGGAGTGCAGCGCAGTTACCACATCACACACGG
CCGCCAGCAGGCCTCGGCGGCGAATCCGGACAAGATATCGAAGCAGTACC
CGGTGGTGGATCACGCCTACGATGCGATCGTCGTGGGAGCAGGAGGAGCC
GGCTTGCGGGCGGCTTTTGGCCTGGTGGCTGAGGGATTTCGCACGGCGGT
GATCACCAAGCTTTTCCCCACCCGCTCGCACACGATCGCCGCCCAGGGCG
GTATCAATGCCGCTCTCGGCAACATGGAGGAGGACGACTGGAAGTGGCAC
ATGTACGACACGGTCAAGGGCTCCGATTGGCTGGGCGACCAGGATGCCAT
CCACTACATGACCCGCGAGGCGCCCAAGGCTGTCATTGAGCTGGAGAACT
ACGGCATGCCCTTCTCGCGTACCCAGGACGGTAAGATCTACCAGCGCGCC
TTCGGTGGACAGAGTCTGAAGTTCGGCAAGGGCGGACAGGCCCATCGCTG
CTGTGCTGTGGCTGATCGTACTGGTCACTCGCTGCTGCACACGCTATACG
GTCAATCGCTGAGCTACGACTGCAACTACTTTGTGGAGTACTTTGCCCTG
GATCTGATCTTCGAGGACGGCGAGTGCCGTGGTGTGCTGGCCCTGAACCT
GGAGGATGGCACACTGCACCGATTCCGCGCTAAGAACACGGTCATTGCCA
CCGGTGGATATGGACGAGCATTCTTCTCCTGCACCTCGGCGCACACATGT
ACCGGTGACGGTACTGCTATGGTTGCACGCCAGGGACTGCCCTCTCAGGA
TCTGGAGTTCGTGCAGTTCCATCCTACTGGCATCTACGGCGCCGGATGTC
TCATCACCGAGGGCTGCCGCGGTGAGGGTGGTTACCTGATCAACGGTAAT
GGTGAGCGCTTCATGGAGCGCTATGCTCCTGTGGCCAAGGATCTGGCCTC
TCGCGACGTCGTCTCGCGGTCGATGACCATCGAGATCATGGAGGGTCGTG
GCGCTGGACCCGAGAAGGATCACGTGTACCTGCAACTGCACCACTTGCCG
CCCAAGCAGCTCGCGGAGCGTCTGCCTGGCATCTCCGAGACCGCCATGAT
CTTCGCCGGTGTTGATGTGACCCGTGAGCCCATCCCCGTGTTGCCCACCG
TGCATTACAACATGGGCGGTGTGCCGACTAACTATCGCGGCCAGGTAATC
ACCATTGACAAGGATGGCAAGGATGTGATTGTGCCGGGACTGTATGCCGC
TGGTGAGGCTGCTTCCAGCTCGGTGCATGGTGCCAACCGTCTGGGTGCCA
ACTCTCTGCTGGATCTGGTGGTCTTCGGACGTGCATGCGCCAAGACCATC
GCCGAGCTGAATAAGCCTGGTGCACCGGCTCCCACCCTCAAGGAAAACGC
TGGCGAGGCCTCTGTTGCTAACCTCGATAAGCTGCGCCATGCCAACGGCC
AGATCACCACCGCCGATCTGCGTCTGAAGATGCAGAAGACCATGCAGCAT
CATGCTGCTGTGTTCCGCGATGGCCCCATCCTGCAGGACGGTGTGAACAA
GATGAAGGAGATCTACAAGCAGTTCAAGGACATCAAGGTTGTCGATAGGT
CGCTTATCTGGAACTCCGATCTGGTGGAGACGCTGGAGCTGCAGAATCTG
TTGGCCAATGCCCAGATGACTATTGTGAGCGCTGAGGCGCGCAAGGAATC
GCGAGGTGCCCACGCCCGCGAGGACTTCAAGGTTCGCGAGGATGAATACG
ATTTCAGCAAGCCCCTGGATGGTCAGCAGAAGAAGCCCATGGATCAGCAC
TGGCGCAAGCACACGCTCTCGTGGGTGTGCAATGACAACGGAGACATTAC
GCTGGACTACAGAAACGTGATCGATACCACGCTGGACAACGAAGTCTCTA
CTGTTCCACCAGCGATTCGCTCCTATTAAATCAAGACTTGGAGTTGCAGA
ACACCCGCATATACACCCCATACCATCACTCGTACGGATGTCTACTTAAA
CGTCTTTGTGGGCGCCAGTAAATAAATTTTGTCAAATCGCCAAATGAGCC
GCAATATGCTACCAATTGGTAACTGGGAACTCGGCAGCGGTTCCGGGCAT
TTTGTGATGAAACGTAAATCCAGATTTTCTATACACCTATAAATCTTTCA
AATCCTTATTACTACTCCGCTGATTCTACTTAGTTTCACTGTAAGCTGCC
CTCCATTTGGTTACTGTTTGGTTGTCGGTTATTTACATTATTACATAAGC
GAAAAATGTGTGTGAGTAGACAACGAGTTAGGTCTGAGGCGATATTGACT
ACGCAGCCTGTTTAGAAGCAAATGAAAACAAATCCAACTACACTTTTCTA
GTATTTGTTAAACTTATTAAATTATTAAAACGAAAACGTGTAAAAAAAAA
AAAAAAAAAA

GH13919.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
SdhA-RA 2839 SdhA-RA 37..2693 1..2657 13255 99.9 Plus
SdhA-RC 2752 SdhA-RC 109..2606 160..2657 12460 99.9 Plus
SdhA-RB 2819 SdhA-RB 176..2673 160..2657 12460 99.9 Plus
SdhA-RC 2752 SdhA-RC 37..108 1..72 360 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15280016..15281616 1850..250 7990 99.9 Minus
chr2R 21145070 chr2R 15279109..15279750 2641..2000 3180 99.7 Minus
chr2R 21145070 chr2R 15282854..15283103 250..1 1250 100 Minus
chr2R 21145070 chr2R 15279810..15279963 2000..1847 770 100 Minus
chr3L 24539361 chr3L 11914506..11915376 1234..370 540 71.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:50:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19392844..19394444 1850..250 8005 100 Minus
2R 25286936 2R 19391921..19392578 2657..2000 3260 99.7 Minus
2R 25286936 2R 19395687..19395936 250..1 1250 100 Minus
2R 25286936 2R 19392638..19392791 2000..1847 770 100 Minus
3L 28110227 3L 11923681..11924551 1234..370 540 71.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19394043..19395643 1850..250 8005 100 Minus
2R 25260384 2R 19393120..19393777 2657..2000 3260 99.6 Minus
2R 25260384 2R 19396886..19397135 250..1 1250 100 Minus
2R 25260384 2R 19393837..19393990 2000..1847 770 100 Minus
3L 28103327 3L 11917325..11917651 696..370 450 75.8 Minus
3L 28103327 3L 11916902..11916967 1113..1048 210 87.8 Minus
3L 28103327 3L 11916781..11916855 1234..1160 150 80 Minus
3L 28103327 3L 11916104..11916156 1911..1859 145 84.9 Minus
Blast to na_te.dros performed on 2019-03-16 03:29:49 has no hits.

GH13919.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:30:43 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15279109..15279750 2000..2641 99 <- Minus
chr2R 15279811..15279961 1849..1999 100 <- Minus
chr2R 15280018..15281615 251..1848 99 <- Minus
chr2R 15282854..15283103 1..250 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:41:09 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
Scs-fp-RA 1..1986 194..2179 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:58 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
SdhA-RA 1..1986 194..2179 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:59:00 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
SdhA-RB 1..1986 194..2179 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:10 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
Scs-fp-RA 1..1986 194..2179 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:27 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
SdhA-RB 1..1986 194..2179 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:15 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
Scs-fp-RA 1..2641 1..2641 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:58 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
SdhA-RA 1..2641 1..2641 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:59:00 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
SdhA-RA 36..2676 1..2641 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:10 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
Scs-fp-RA 1..2641 1..2641 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:27 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
SdhA-RA 36..2676 1..2641 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:43 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19391937..19392578 2000..2641 100 <- Minus
2R 19392639..19392789 1849..1999 100 <- Minus
2R 19392846..19394443 251..1848 100 <- Minus
2R 19395687..19395936 1..250 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:43 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19391937..19392578 2000..2641 100 <- Minus
2R 19392639..19392789 1849..1999 100 <- Minus
2R 19392846..19394443 251..1848 100 <- Minus
2R 19395687..19395936 1..250 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:43 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19391937..19392578 2000..2641 100 <- Minus
2R 19392639..19392789 1849..1999 100 <- Minus
2R 19392846..19394443 251..1848 100 <- Minus
2R 19395687..19395936 1..250 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:59:00 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15279442..15280083 2000..2641 100 <- Minus
arm_2R 15280144..15280294 1849..1999 100 <- Minus
arm_2R 15280351..15281948 251..1848 100 <- Minus
arm_2R 15283192..15283441 1..250 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:00 Download gff for GH13919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19393136..19393777 2000..2641 100 <- Minus
2R 19393838..19393988 1849..1999 100 <- Minus
2R 19394045..19395642 251..1848 100 <- Minus
2R 19396886..19397135 1..250 100   Minus

GH13919.pep Sequence

Translation from 193 to 2178

> GH13919.pep
MSGIMRVPSILAKNAVASMQRAAAVGVQRSYHITHGRQQASAANPDKISK
QYPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAA
QGGINAALGNMEEDDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIEL
ENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHT
LYGQSLSYDCNYFVEYFALDLIFEDGECRGVLALNLEDGTLHRFRAKNTV
IATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGA
GCLITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIME
GRGAGPEKDHVYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVL
PTVHYNMGGVPTNYRGQVITIDKDGKDVIVPGLYAAGEAASSSVHGANRL
GANSLLDLVVFGRACAKTIAELNKPGAPAPTLKENAGEASVANLDKLRHA
NGQITTADLRLKMQKTMQHHAAVFRDGPILQDGVNKMKEIYKQFKDIKVV
DRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHAREDFKVRED
EYDFSKPLDGQQKKPMDQHWRKHTLSWVCNDNGDITLDYRNVIDTTLDNE
VSTVPPAIRSY*

GH13919.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12611-PA 661 GF12611-PA 1..661 1..661 3369 95.2 Plus
Dana\GF24501-PA 645 GF24501-PA 4..645 10..661 2141 62.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20911-PA 661 GG20911-PA 1..661 1..661 3567 99.7 Plus
Dere\GG13871-PA 651 GG13871-PA 27..651 39..661 2152 63 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22974-PA 667 GH22974-PA 1..667 1..661 3210 88.2 Plus
Dgri\GH16714-PA 644 GH16714-PA 13..644 27..661 2242 63 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
SdhA-PA 661 CG17246-PA 1..661 1..661 3468 100 Plus
SdhA-PC 661 CG17246-PC 1..661 1..661 3468 100 Plus
SdhA-PB 661 CG17246-PB 1..661 1..661 3468 100 Plus
SdhAL-PA 651 CG5718-PA 27..651 39..661 2182 63.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18459-PA 666 GI18459-PA 1..666 1..661 3210 88.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11254-PA 661 GL11254-PA 1..661 1..661 3316 94.1 Plus
Dper\GL25074-PA 590 GL25074-PA 25..590 35..661 1806 56.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14410-PA 661 GA14410-PA 1..661 1..661 3316 94.1 Plus
Dpse\GA19081-PA 648 GA19081-PA 25..648 35..661 2153 63.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19835-PA 636 GM19835-PA 1..636 1..661 3382 95.5 Plus
Dsec\GM24693-PA 651 GM24693-PA 39..651 51..661 2166 64.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25325-PA 657 GD25325-PA 1..657 1..661 3511 98.6 Plus
Dsim\GD12763-PA 612 GD12763-PA 39..612 51..661 1945 59.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21546-PA 665 GJ21546-PA 1..665 1..661 3260 89.6 Plus
Dvir\GJ11663-PA 651 GJ11663-PA 9..651 4..661 2173 60.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22213-PA 661 GK22213-PA 1..661 1..661 3327 94.1 Plus
Dwil\GK13629-PA 319 GK13629-PA 1..317 139..486 880 54.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13850-PA 661 GE13850-PA 1..661 1..661 3559 99.4 Plus
Dyak\GE20163-PA 651 GE20163-PA 27..651 39..661 2173 64 Plus

GH13919.hyp Sequence

Translation from 193 to 2178

> GH13919.hyp
MSGIMRVPSILAKNAVASMQRAAAVGVQRSYHITHGRQQASAANPDKISK
QYPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAA
QGGINAALGNMEEDDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIEL
ENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHT
LYGQSLSYDCNYFVEYFALDLIFEDGECRGVLALNLEDGTLHRFRAKNTV
IATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGA
GCLITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIME
GRGAGPEKDHVYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVL
PTVHYNMGGVPTNYRGQVITIDKDGKDVIVPGLYAAGEAASSSVHGANRL
GANSLLDLVVFGRACAKTIAELNKPGAPAPTLKENAGEASVANLDKLRHA
NGQITTADLRLKMQKTMQHHAAVFRDGPILQDGVNKMKEIYKQFKDIKVV
DRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHAREDFKVRED
EYDFSKPLDGQQKKPMDQHWRKHTLSWVCNDNGDITLDYRNVIDTTLDNE
VSTVPPAIRSY*

GH13919.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
SdhA-PA 661 CG17246-PA 1..661 1..661 3468 100 Plus
SdhA-PC 661 CG17246-PC 1..661 1..661 3468 100 Plus
SdhA-PB 661 CG17246-PB 1..661 1..661 3468 100 Plus
CG5718-PA 651 CG5718-PA 27..651 39..661 2182 63.7 Plus