Clone GH13929 Report

Search the DGRC for GH13929

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:139
Well:29
Vector:pOT2
Associated Gene/TranscriptCG11912-RA
Protein status:GH13929.pep: gold
Preliminary Size:1002
Sequenced Size:900

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11912 2001-01-01 Release 2 assignment
CG11912 2003-01-01 Sim4 clustering to Release 3
CG11912 2003-01-14 Blastp of sequenced clone
CG11912 2008-04-29 Release 5.5 accounting
CG11912 2008-08-15 Release 5.9 accounting
CG11912 2008-12-18 5.12 accounting

Clone Sequence Records

GH13929.complete Sequence

900 bp (900 high quality bases) assembled on 2003-01-14

GenBank Submission: AY060697

> GH13929.complete
AGAACTCAAAATGAAACAATTCGCGGTTATATTCGCACTGGCTCTGGCTT
CGGTTTCGGCCATTTCTGTCCCTCAGCCGGGATTCCCCGAAGGTCGCATC
ATCAACGGCTATGAAGCGGCGAAGGGAGAGGCGCCCTATATTGTGTCCTT
ACAGACCACATCCAACTCGCACTTCTGTGCAGGAAGCTTGCTCGATGAGG
TGACCATTGTGACCGCCGCACACTGCCTGACCTACAATCAGGGTCAGGCA
GTTGCCGGTGCACACAGCCGCACTGACCAGGAGAACGTTCAGATTAGGAA
GTTCACCAATGCCCAGTACGTGATCCACGAGAACTACGGTGGCGGTGTGG
GACCCAACGACATCGGCCTAATTCTCCTCAAGGAAGAGGATGCCTTTGAC
CTGAATGCCGTTGCCCGTGATGGCAGCAATCCGGTTTCCGCAGTAAGTCT
TCCTTCAAAGACATTCCAAGGCACTAGCGATGGATATCTGTACGGCTGGG
GCCGCGACAACTCAGGATTGCTGCCGCTGAACCTTCAGAAACTGGACGCT
ATCATTGTTGACTACAACGAATGCAAGGCGGCGTTGCCATCCAACAATTC
GCTGGCAGAAACCAATGTATGCACCCACACCCCCGGAAAAGCCGACGGAT
CCTGCAACGGAGACAGTGGCGGCCCCCTGGTCTCGCAATCCAGCAGTCGA
GGAGCCGAGCTGATTGGCATCGTCTCCTGGGGATACACACCCTGTTTGTC
CACAACCTATCCTTCCGTATACACATCAGTGTCTTCGTTTTTGCCTTGGA
TCGATGAGAACCGTAAGGCGAAATAGACAAAAACCTATTCTCTTATATAA
CCACTTAATAAACGAACATTCTGTACTCAAACAAAAAAAAAAAAAAAAAA

GH13929.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-RA 898 CG11912-RA 12..895 1..884 4420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 318398..319279 882..1 4395 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:50:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 318360..319243 884..1 4420 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 318360..319243 884..1 4420 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:35:45 has no hits.

GH13929.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:36:22 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 318398..319279 1..882 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:41:13 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 1..816 11..826 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:50 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 1..816 11..826 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:49:40 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 1..816 11..826 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:48:40 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 1..816 11..826 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:50:12 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 1..816 11..826 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:14:11 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 12..893 1..882 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:49 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 12..893 1..882 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:49:40 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 17..898 1..882 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:40 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 12..893 1..882 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:50:12 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 17..898 1..882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:22 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
2L 318362..319243 1..882 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:22 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
2L 318362..319243 1..882 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:22 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
2L 318362..319243 1..882 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:49:40 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 318362..319243 1..882 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:20:03 Download gff for GH13929.complete
Subject Subject Range Query Range Percent Splice Strand
2L 318362..319243 1..882 100   Minus

GH13929.hyp Sequence

Translation from 1 to 825

> GH13929.hyp
ELKMKQFAVIFALALASVSAISVPQPGFPEGRIINGYEAAKGEAPYIVSL
QTTSNSHFCAGSLLDEVTIVTAAHCLTYNQGQAVAGAHSRTDQENVQIRK
FTNAQYVIHENYGGGVGPNDIGLILLKEEDAFDLNAVARDGSNPVSAVSL
PSKTFQGTSDGYLYGWGRDNSGLLPLNLQKLDAIIVDYNECKAALPSNNS
LAETNVCTHTPGKADGSCNGDSGGPLVSQSSSRGAELIGIVSWGYTPCLS
TTYPSVYTSVSSFLPWIDENRKAK*

GH13929.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-PA 271 CG11912-PA 1..271 4..274 1415 100 Plus
CG11911-PA 277 CG11911-PA 1..272 2..273 461 37.6 Plus
Phae2-PC 265 CG16997-PC 11..264 9..272 375 38.2 Plus
Phae2-PB 265 CG16997-PB 11..264 9..272 375 38.2 Plus
Phae1-PB 270 CG16996-PB 15..268 9..272 362 36.9 Plus

GH13929.pep Sequence

Translation from 10 to 825

> GH13929.pep
MKQFAVIFALALASVSAISVPQPGFPEGRIINGYEAAKGEAPYIVSLQTT
SNSHFCAGSLLDEVTIVTAAHCLTYNQGQAVAGAHSRTDQENVQIRKFTN
AQYVIHENYGGGVGPNDIGLILLKEEDAFDLNAVARDGSNPVSAVSLPSK
TFQGTSDGYLYGWGRDNSGLLPLNLQKLDAIIVDYNECKAALPSNNSLAE
TNVCTHTPGKADGSCNGDSGGPLVSQSSSRGAELIGIVSWGYTPCLSTTY
PSVYTSVSSFLPWIDENRKAK*

GH13929.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24882-PA 267 GF24882-PA 1..261 1..267 827 58.6 Plus
Dana\GF24871-PA 277 GF24871-PA 30..272 23..270 469 40.9 Plus
Dana\GF23147-PA 335 GF23147-PA 59..326 8..266 351 34.8 Plus
Dana\GF21569-PA 268 GF21569-PA 27..265 22..268 342 39.2 Plus
Dana\GF12402-PA 256 GF12402-PA 1..254 1..269 335 32.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24658-PA 273 GG24658-PA 1..273 1..271 1187 82.1 Plus
Dere\GG24657-PA 277 GG24657-PA 1..272 1..270 484 40.3 Plus
Dere\GG16564-PA 334 GG16564-PA 58..325 8..266 373 36.2 Plus
Dere\GG23769-PA 270 GG23769-PA 15..268 6..269 356 38.2 Plus
Dere\epsilonTry-PA 256 GG22660-PA 1..254 1..269 321 32 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11152-PA 269 GH11152-PA 1..265 1..267 817 59.2 Plus
Dgri\GH11150-PA 277 GH11150-PA 1..272 1..270 470 39.4 Plus
Dgri\GH22534-PA 277 GH22534-PA 1..272 1..270 469 39.4 Plus
Dgri\GH22535-PA 277 GH22535-PA 1..272 1..270 455 38.7 Plus
Dgri\GH11151-PA 277 GH11151-PA 1..272 1..270 455 38.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-PA 271 CG11912-PA 1..271 1..271 1415 100 Plus
CG11911-PA 277 CG11911-PA 30..272 23..270 459 39.9 Plus
Phae2-PC 265 CG16997-PC 11..264 6..269 375 38.2 Plus
Phae2-PB 265 CG16997-PB 11..264 6..269 375 38.2 Plus
Phae1-PB 270 CG16996-PB 15..268 6..269 362 36.9 Plus
Phae1-PA 270 CG16996-PA 15..268 6..269 362 36.9 Plus
CG7142-PA 334 CG7142-PA 65..325 15..266 351 36.4 Plus
CG17571-PB 258 CG17571-PB 5..251 6..264 327 34.6 Plus
CG17571-PA 258 CG17571-PA 5..251 6..264 327 34.6 Plus
epsilonTry-PA 256 CG18681-PA 1..250 1..265 313 33 Plus
CG5255-PA 273 CG5255-PA 4..249 6..264 299 33.5 Plus
Jon65Aiv-PA 271 CG6467-PA 2..268 3..267 292 33.7 Plus
Jon44E-PB 271 CG8579-PB 1..266 1..267 292 31.1 Plus
Jon44E-PA 271 CG8579-PA 1..266 1..267 292 31.1 Plus
CG18179-PA 268 CG18179-PA 1..263 1..267 291 34.2 Plus
betaTry-PB 253 CG18211-PB 1..252 1..267 285 31.5 Plus
betaTry-PA 253 CG18211-PA 1..252 1..267 285 31.5 Plus
Ser8-PA 260 CG4812-PA 8..258 4..269 285 32.6 Plus
CG31269-PB 273 CG31269-PB 15..255 12..264 285 33.7 Plus
Jon99Cii-PA 265 CG31034-PA 1..260 1..267 284 32 Plus
Jon99Ciii-PB 265 CG31362-PB 1..260 1..267 284 32 Plus
Jon99Ciii-PA 265 CG31362-PA 1..260 1..267 284 32 Plus
CG16749-PA 265 CG16749-PA 11..261 7..268 284 28.8 Plus
thetaTry-PA 262 CG12385-PA 16..255 11..264 283 33.1 Plus
Jon65Aiii-PA 274 CG6483-PA 5..269 6..267 281 35 Plus
CG5246-PA 272 CG5246-PA 38..263 26..266 280 32.5 Plus
alphaTry-PA 256 CG18444-PA 5..249 6..264 278 31.7 Plus
gammaTry-PA 253 CG30028-PA 5..252 6..267 277 31.5 Plus
CG30025-PA 253 CG30025-PA 5..252 6..267 277 31.5 Plus
deltaTry-PA 253 CG12351-PA 5..252 6..267 277 31.5 Plus
CG30031-PA 253 CG30031-PA 5..252 6..267 277 31.5 Plus
CG11192-PB 279 CG11192-PB 19..266 19..271 276 31.4 Plus
CG31265-PA 266 CG31265-PA 28..254 21..264 274 33.5 Plus
Jon99Fii-PA 267 CG2229-PA 1..262 1..267 274 31.6 Plus
etaTry-PA 262 CG12386-PA 6..258 1..268 273 30.7 Plus
CG12951-PA 265 CG12951-PA 8..261 9..268 272 28.1 Plus
Jon99Fi-PA 267 CG18030-PA 5..262 6..267 271 31 Plus
kappaTry-PC 263 CG12388-PC 6..255 6..266 266 32 Plus
CG32808-PA 284 CG32808-PA 1..257 1..266 264 29 Plus
CG18180-PA 264 CG18180-PA 1..256 1..264 261 32.9 Plus
iotaTry-PA 252 CG7754-PA 26..245 28..264 259 31.8 Plus
CG17477-PA 267 CG17477-PA 27..247 30..264 257 31 Plus
Jon25Bi-PB 266 CG8867-PB 1..260 1..267 256 32.1 Plus
CG17475-PB 288 CG17475-PB 47..267 27..264 255 31.8 Plus
CG17475-PA 288 CG17475-PA 47..267 27..264 255 31.8 Plus
CG6041-PA 308 CG6041-PA 12..269 7..264 255 30.1 Plus
Sb-PB 787 CG4316-PB 527..785 13..267 255 31.2 Plus
Sb-PA 787 CG4316-PA 527..785 13..267 255 31.2 Plus
CG33127-PA 284 CG33127-PA 41..275 30..266 253 31.9 Plus
CG8299-PA 260 CG8299-PA 10..258 12..270 247 28.1 Plus
Jon66Ci-PA 260 CG7118-PA 1..254 1..267 245 31.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17857-PA 267 GI17857-PA 1..263 1..267 811 57.7 Plus
Dmoj\GI17856-PA 265 GI17856-PA 1..261 1..267 762 55.1 Plus
Dmoj\GI17855-PA 278 GI17855-PA 30..273 23..270 456 40 Plus
Dmoj\GI23092-PA 326 GI23092-PA 50..317 8..266 337 34.8 Plus
Dmoj\GI17150-PA 251 GI17150-PA 16..251 26..271 335 38.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19276-PA 271 GL19276-PA 1..265 1..267 796 55.1 Plus
Dper\GL19275-PA 277 GL19275-PA 30..272 23..270 447 39.8 Plus
Dper\GL22122-PA 336 GL22122-PA 60..327 8..266 356 35.1 Plus
Dper\GL19241-PA 266 GL19241-PA 11..264 6..270 319 38.4 Plus
Dper\GL17338-PA 256 GL17338-PA 1..252 1..267 315 31.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25897-PA 271 GA25897-PA 1..265 1..267 803 55.4 Plus
Dpse\GA11277-PA 277 GA11277-PA 30..272 23..270 452 40.2 Plus
Dpse\GA20132-PA 336 GA20132-PA 60..327 8..266 353 35.1 Plus
Dpse\GA15051-PA 256 GA15051-PA 1..252 1..267 322 31.9 Plus
Dpse\GA14265-PA 266 GA14265-PA 27..264 26..270 322 40.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16678-PA 271 GM16678-PA 1..271 1..271 1326 91.9 Plus
Dsec\GM16677-PA 277 GM16677-PA 1..272 1..270 472 39.6 Plus
Dsec\GM15310-PA 334 GM15310-PA 58..325 8..266 371 36.2 Plus
Dsec\GM26739-PA 273 GM26739-PA 19..272 6..269 358 38.2 Plus
Dsec\GM26738-PA 263 GM26738-PA 30..261 24..269 351 38.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22966-PA 271 GD22966-PA 1..271 1..271 1370 94.5 Plus
Dsim\GD22965-PA 277 GD22965-PA 30..272 23..270 470 41.3 Plus
Dsim\GD20188-PA 334 GD20188-PA 58..325 8..266 371 36.2 Plus
Dsim\GD23820-PA 273 GD23820-PA 19..272 6..269 370 39.3 Plus
Dsim\GD23819-PA 270 GD23819-PA 30..268 24..269 350 39.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17355-PA 269 GJ17355-PA 1..265 1..267 817 59.6 Plus
Dvir\GJ17354-PA 277 GJ17354-PA 1..272 1..270 488 42 Plus
Dvir\GJ17353-PA 277 GJ17353-PA 1..272 1..270 487 41 Plus
Dvir\GJ22712-PA 326 GJ22712-PA 50..317 8..266 360 36.2 Plus
Dvir\GJ17654-PA 277 GJ17654-PA 22..277 8..271 355 37.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23888-PA 268 GK23888-PA 1..267 1..269 826 58.4 Plus
Dwil\GK23887-PA 278 GK23887-PA 1..273 1..270 479 38.5 Plus
Dwil\GK22780-PA 335 GK22780-PA 59..326 8..266 357 35.5 Plus
Dwil\GK21994-PA 256 GK21994-PA 1..252 1..267 340 34.5 Plus
Dwil\GK21089-PA 276 GK21089-PA 9..272 4..268 335 36.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16217-PA 271 GE16217-PA 1..271 1..271 1263 86 Plus
Dyak\GE16206-PA 277 GE16206-PA 1..272 1..270 484 39.9 Plus
Dyak\GE25219-PA 334 GE25219-PA 58..325 8..266 366 35.8 Plus
Dyak\GE18574-PA 273 GE18574-PA 19..272 6..269 361 37.5 Plus
Dyak\GE18573-PA 270 GE18573-PA 21..269 12..270 357 39.3 Plus