Clone GH13953 Report

Search the DGRC for GH13953

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:139
Well:53
Vector:pOT2
Associated Gene/TranscriptCG10252-RA
Protein status:GH13953.pep: gold
Preliminary Size:1013
Sequenced Size:841

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10252 2001-01-01 Release 2 assignment
CG10252 2001-11-29 Blastp of sequenced clone
CG10252 2003-01-01 Sim4 clustering to Release 3
CG10252 2008-04-29 Release 5.5 accounting
CG10252 2008-08-15 Release 5.9 accounting
CG10252 2008-12-18 5.12 accounting

Clone Sequence Records

GH13953.complete Sequence

841 bp (841 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069130

> GH13953.complete
CCAACACCTAATATTGGGTTCTAAATTTTCAAAATAGATTTTCTTTCTAA
TATTGCACAAAACTAACAAAAATGGCGGTGCGACCTTTTGGCCCTGGACC
CGGCGTTTACATGCTGCCCCCCACTGTGGGCTATGATAAGCATGACAACC
GCAAACAGCGGTTGCCGCAGTACTCTTTCGGCATGCGCACCCGTGCTCCT
GGTGAGGATCTGGGTCCTGGTCCAGGGGCCTACAAGGTGGACAAGTTGAC
TCGCTATGGCACGAGCAAGGGTTTGGAGTTCTCGATGGCGCCCAGAACCA
ATGTCATCGATAAGCGAAGCAGTCCCGGTCCGGGAGCACACGATGTTCAT
AATAGGCCATTCTTTAAGGGGGTTAATGCTCCTTCGTATTCGATGGGCCT
ACGAACGGACTTTAACTTCAAGAAGGATGGTCCCGGTCCCAATGCCTACA
AGTACGAGGTCAATGCCGTTCGTCCTGGAGTCCCGAGCTATAGCATGGGA
CTACAAACAAAGATTTTGAACAAGACGAATTCTCCGGGTCCGGCTGCATA
TGGCGGTGGTGATATCAATGTCAAACTGACACGTGCTCCGATATACTCGA
TGCAGCCGCGCACCACTATTCCGGGCGAGAATGTCGGACCTGGACCCAAC
TACTACGACCTCATGTACTATCGTCCTGGCAAGAGTGGACCGGGCTACTC
CTTTGGTGTGCGCCACCACCAGTTCGCTCCGCCTATGATAGTTAGATGTG
ACAATATGTAGACCAAGTGCAATATTGGAAGAAATATATGCTAAAATTTT
TGTGAATAAACAATTCTTTTTAAAAAAAAAAAAAAAAAAAA

GH13953.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-RA 955 CG10252-RA 107..930 1..824 4120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19518637..19518961 821..497 1625 100 Minus
chr3R 27901430 chr3R 19519275..19519499 314..90 1095 99.1 Minus
chr3R 27901430 chr3R 19519032..19519220 497..309 945 100 Minus
chr3R 27901430 chr3R 19519560..19519650 91..1 440 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:50:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23695218..23695545 824..497 1640 100 Minus
3R 32079331 3R 23695859..23696083 314..90 1110 99.6 Minus
3R 32079331 3R 23695616..23695804 497..309 945 100 Minus
3R 32079331 3R 23696143..23696233 91..1 455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23436049..23436376 824..497 1640 100 Minus
3R 31820162 3R 23436690..23436914 314..90 1110 99.5 Minus
3R 31820162 3R 23436447..23436635 497..309 945 100 Minus
3R 31820162 3R 23436974..23437064 91..1 455 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:19:23 has no hits.

GH13953.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:20:38 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19519561..19519650 1..90 98   Minus
chr3R 19518637..19518961 497..821 100 <- Minus
chr3R 19519033..19519219 310..496 100 <- Minus
chr3R 19519280..19519498 91..309 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:41:16 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 1..690 72..761 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:01:11 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 1..690 72..761 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:47:49 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 1..690 72..761 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:32 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 1..690 72..761 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:04 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 1..690 72..761 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:42:29 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 46..866 1..821 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:01:11 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 46..866 1..821 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:47:49 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 13..833 1..821 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:33 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 46..866 1..821 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:04 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 13..833 1..821 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:38 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23695221..23695545 497..821 100 <- Minus
3R 23695617..23695803 310..496 100 <- Minus
3R 23695864..23696082 91..309 100 <- Minus
3R 23696144..23696233 1..90 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:38 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23695221..23695545 497..821 100 <- Minus
3R 23695617..23695803 310..496 100 <- Minus
3R 23695864..23696082 91..309 100 <- Minus
3R 23696144..23696233 1..90 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:38 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23695221..23695545 497..821 100 <- Minus
3R 23695617..23695803 310..496 100 <- Minus
3R 23695864..23696082 91..309 100 <- Minus
3R 23696144..23696233 1..90 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:47:49 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19520943..19521267 497..821 100 <- Minus
arm_3R 19521339..19521525 310..496 100 <- Minus
arm_3R 19521586..19521804 91..309 100 <- Minus
arm_3R 19521866..19521955 1..90 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:26:44 Download gff for GH13953.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23436695..23436913 91..309 100 <- Minus
3R 23436975..23437064 1..90 100   Minus
3R 23436052..23436376 497..821 100 <- Minus
3R 23436448..23436634 310..496 100 <- Minus

GH13953.hyp Sequence

Translation from 71 to 760

> GH13953.hyp
MAVRPFGPGPGVYMLPPTVGYDKHDNRKQRLPQYSFGMRTRAPGEDLGPG
PGAYKVDKLTRYGTSKGLEFSMAPRTNVIDKRSSPGPGAHDVHNRPFFKG
VNAPSYSMGLRTDFNFKKDGPGPNAYKYEVNAVRPGVPSYSMGLQTKILN
KTNSPGPAAYGGGDINVKLTRAPIYSMQPRTTIPGENVGPGPNYYDLMYY
RPGKSGPGYSFGVRHHQFAPPMIVRCDNM*

GH13953.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-PA 229 CG10252-PA 1..229 1..229 1262 100 Plus
CG8086-PI 1603 CG8086-PI 45..263 1..220 239 29.6 Plus
CG8086-PA 272 CG8086-PA 19..243 1..218 217 28.5 Plus
CG8086-PB 298 CG8086-PB 45..269 1..218 217 28.5 Plus
CG8086-PK 261 CG8086-PK 19..242 1..218 214 28.9 Plus
CG8086-PI 1603 CG8086-PI 234..425 8..217 175 25.7 Plus
CG8086-PI 1603 CG8086-PI 165..356 8..214 173 28 Plus
CG8086-PI 1603 CG8086-PI 465..659 16..220 152 27.3 Plus
CG8086-PI 1603 CG8086-PI 399..588 16..215 150 27.5 Plus

GH13953.pep Sequence

Translation from 71 to 760

> GH13953.pep
MAVRPFGPGPGVYMLPPTVGYDKHDNRKQRLPQYSFGMRTRAPGEDLGPG
PGAYKVDKLTRYGTSKGLEFSMAPRTNVIDKRSSPGPGAHDVHNRPFFKG
VNAPSYSMGLRTDFNFKKDGPGPNAYKYEVNAVRPGVPSYSMGLQTKILN
KTNSPGPAAYGGGDINVKLTRAPIYSMQPRTTIPGENVGPGPNYYDLMYY
RPGKSGPGYSFGVRHHQFAPPMIVRCDNM*

GH13953.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18749-PA 225 GF18749-PA 3..215 2..215 880 79.9 Plus
Dana\GF15269-PA 1584 GF15269-PA 47..289 1..214 164 25.5 Plus
Dana\GF15827-PA 79 GF15827-PA 5..67 6..75 159 54.9 Plus
Dana\GF18747-PA 90 GF18747-PA 1..78 1..72 146 44.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12416-PA 229 GG12416-PA 1..229 1..229 1184 99.6 Plus
Dere\GG12414-PA 80 GG12414-PA 5..79 4..75 167 49.3 Plus
Dere\GG23461-PA 1676 GG23461-PA 45..296 1..229 162 25.2 Plus
Dere\GG23676-PA 79 GG23676-PA 3..71 4..79 156 50.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13919-PA 229 GH13919-PA 1..229 1..229 816 67.2 Plus
Dgri\GH10184-PA 1736 GH10184-PA 19..235 1..218 219 29 Plus
Dgri\GH10184-PA 1736 GH10184-PA 222..399 30..217 160 27.1 Plus
Dgri\GH13587-PA 81 GH13587-PA 6..77 7..84 141 44.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-PA 229 CG10252-PA 1..229 1..229 1262 100 Plus
CG8086-PI 1603 CG8086-PI 45..263 1..220 239 29.6 Plus
CG8086-PA 272 CG8086-PA 19..243 1..218 217 28.5 Plus
CG8086-PB 298 CG8086-PB 45..269 1..218 217 28.5 Plus
CG8086-PK 261 CG8086-PK 19..242 1..218 214 28.9 Plus
CG8086-PO 1516 CG8086-PO 45..256 1..214 210 29.9 Plus
CG8086-PG 1569 CG8086-PG 45..256 1..214 210 29.9 Plus
CG8086-PN 1448 CG8086-PN 45..287 1..214 201 26.7 Plus
CG8086-PJ 1453 CG8086-PJ 19..261 1..214 201 26.7 Plus
CG8086-PP 1501 CG8086-PP 45..287 1..214 201 26.7 Plus
CG8086-PM 1512 CG8086-PM 45..287 1..214 201 26.7 Plus
CG8086-PL 1534 CG8086-PL 45..287 1..214 201 26.7 Plus
CG8086-PH 1568 CG8086-PH 45..255 1..214 198 29 Plus
CG31870-PD 79 CG31870-PD 3..69 4..77 179 52 Plus
CG31870-PA 79 CG31870-PA 3..69 4..77 179 52 Plus
CG31468-PB 80 CG31468-PB 5..79 4..75 176 49.3 Plus
CG31468-PA 80 CG31468-PA 5..79 4..75 176 49.3 Plus
CG8086-PI 1603 CG8086-PI 234..425 8..217 175 25.7 Plus
CG8086-PO 1516 CG8086-PO 200..391 8..217 175 25.7 Plus
CG8086-PG 1569 CG8086-PG 200..391 8..217 175 25.7 Plus
CG8086-PN 1448 CG8086-PN 162..356 13..217 175 23.9 Plus
CG8086-PJ 1453 CG8086-PJ 136..330 13..217 175 23.9 Plus
CG8086-PP 1501 CG8086-PP 162..356 13..217 175 23.9 Plus
CG8086-PM 1512 CG8086-PM 162..356 13..217 175 23.9 Plus
CG8086-PL 1534 CG8086-PL 162..356 13..217 175 23.9 Plus
CG8086-PH 1568 CG8086-PH 199..390 8..217 175 25.7 Plus
CG8086-PI 1603 CG8086-PI 165..356 8..214 173 28 Plus
CG8086-PI 1603 CG8086-PI 465..659 16..220 152 27.3 Plus
CG8086-PO 1516 CG8086-PO 431..625 16..220 152 27.3 Plus
CG8086-PG 1569 CG8086-PG 431..625 16..220 152 27.3 Plus
CG8086-PN 1448 CG8086-PN 396..590 16..220 152 27.3 Plus
CG8086-PJ 1453 CG8086-PJ 370..564 16..220 152 27.3 Plus
CG8086-PP 1501 CG8086-PP 396..590 16..220 152 27.3 Plus
CG8086-PM 1512 CG8086-PM 396..590 16..220 152 27.3 Plus
CG8086-PL 1534 CG8086-PL 396..590 16..220 152 27.3 Plus
CG8086-PH 1568 CG8086-PH 430..624 16..220 152 27.3 Plus
CG8086-PI 1603 CG8086-PI 399..588 16..215 150 27.5 Plus
CG8086-PO 1516 CG8086-PO 365..554 16..215 150 27.5 Plus
CG8086-PG 1569 CG8086-PG 365..554 16..215 150 27.5 Plus
CG8086-PN 1448 CG8086-PN 330..519 16..215 150 27.5 Plus
CG8086-PJ 1453 CG8086-PJ 304..493 16..215 150 27.5 Plus
CG8086-PP 1501 CG8086-PP 330..519 16..215 150 27.5 Plus
CG8086-PM 1512 CG8086-PM 330..519 16..215 150 27.5 Plus
CG8086-PL 1534 CG8086-PL 330..519 16..215 150 27.5 Plus
CG8086-PH 1568 CG8086-PH 129..321 8..214 150 28.9 Plus
CG8086-PH 1568 CG8086-PH 364..553 16..215 150 27.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\Tes154-PA 229 GI24832-PA 1..229 1..229 827 68.6 Plus
Dmoj\GI24833-PA 229 GI24833-PA 1..229 1..229 823 67.7 Plus
Dmoj\GI14246-PA 1313 GI14246-PA 19..261 1..214 183 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13835-PA 229 GL13835-PA 1..229 1..229 910 74.7 Plus
Dper\GL19387-PA 326 GL19387-PA 19..261 1..214 153 25.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26812-PA 229 GA26812-PA 1..229 1..229 909 74.7 Plus
Dpse\GA20813-PA 1909 GA20813-PA 48..258 1..214 165 30 Plus
Dpse\GA16271-PA 74 GA16271-PA 1..64 14..75 150 46.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23550-PA 229 GM23550-PA 1..229 1..229 1186 100 Plus
Dsec\GM18739-PA 79 GM18739-PA 3..71 4..79 158 50.6 Plus
Dsec\GM23548-PA 81 GM23548-PA 5..80 4..75 155 46.1 Plus
Dsec\GM18736-PA 81 GM18736-PA 5..80 4..75 155 46.1 Plus
Dsec\GM26710-PA 81 GM26710-PA 5..80 4..75 155 46.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18365-PA 229 GD18365-PA 1..229 1..229 1186 100 Plus
Dsim\GD18362-PA 81 GD18362-PA 5..80 4..75 160 47.4 Plus
Dsim\GD22425-PA 1063 GD22425-PA 45..283 1..212 160 26.5 Plus
Dsim\GD23733-PA 79 GD23733-PA 3..71 4..79 156 49.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24476-PA 225 GJ24476-PA 3..225 7..229 816 67.7 Plus
Dvir\GJ24477-PA 229 GJ24477-PA 1..229 1..229 803 69.4 Plus
Dvir\GJ20745-PA 87 GJ20745-PA 3..78 4..78 199 53.9 Plus
Dvir\GJ20592-PA 1453 GJ20592-PA 19..210 1..195 162 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14096-PA 229 GK14096-PA 1..229 1..229 887 72.9 Plus
Dwil\GK14097-PA 229 GK14097-PA 1..228 1..228 807 68.4 Plus
Dwil\GK23857-PA 1048 GK23857-PA 19..261 1..214 174 27.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23935-PA 229 GE23935-PA 1..229 1..229 1184 99.6 Plus
Dyak\GE23933-PA 81 GE23933-PA 5..80 4..75 168 46.1 Plus
Dyak\GE11082-PA 1456 GE11082-PA 45..287 1..214 164 25.9 Plus
Dyak\GE18489-PA 79 GE18489-PA 3..68 4..76 163 52.7 Plus