BDGP Sequence Production Resources |
Search the DGRC for GH13992
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 139 |
Well: | 92 |
Vector: | pOT2 |
Associated Gene/Transcript | shrb-RA |
Protein status: | GH13992.pep: gold |
Preliminary Size: | 1239 |
Sequenced Size: | 1269 |
Gene | Date | Evidence |
---|---|---|
CG8055 | 2001-01-01 | Release 2 assignment |
CG8055 | 2003-01-13 | Blastp of sequenced clone |
shrb | 2008-04-29 | Release 5.5 accounting |
shrb | 2008-08-15 | Release 5.9 accounting |
shrb | 2008-12-18 | 5.12 accounting |
1269 bp (1269 high quality bases) assembled on 2003-01-13
GenBank Submission: AY069131
> GH13992.complete TGACGCATACGAACAACAGCTCCCAGACAACCAAGAAACGCAATAGCAGA AAAAAACTCACTTGTTCGCTAAATTCGGGTGAAAAAACAGATCAGCCAGG ATGAGTTTCTTCGGGAAGATGTTCGGCGGCAAGAAGGAAGTGGCCCCCAC CACCGGCGAGGCGATACAGAAGCTGCGCGAGACGGAGAACATGCTTATCA AAAAGCAGGAGTTCCTGGAGGCCAAGATCGAGGACGAACTGAATATAGCC CGCAAGAATGCGTCTAAAAACAAAAGAGTGGCCCTGCAAGCACTCAAGAA AAAGAAGCGGCTGGAGAAGCAACTCCAGCAGATCGATGGCACCCTGTCCA CAATCGAAATGCAGCGCGAGGCTCTGGAGAGCGCCAACACAAACACTGCC GTCTTGACCACGATGAAGAATGCCGCGGATGCCCTCAAGAGAGCCCATCA GAATATGGACGTGGACAAGGTGCACGACATGATGGATGACATTGCCGAGC AGCAGGACGTGGCCCGCGAGATTTCCGATGCCATTTCGAACCCAGTGGCA TTCGGCGCCGATCTGGATGATGAGGATCTCGAGCGGGAACTCGACGAGCT GGAGCAGGAGAACTTTGATAAGGAAATCATTGGCATACCCGAGCCGACGC CCACATTGCCAGAAGCACCCACAGAAGATTTGCCCGAGAAGGCCAAAGAA AAGAAAAAGGCGACAACCACGACTGCCGTGGAGGATGATGATGATCCAGA CATGAAGCAGCTTTTATCCTGGTCCAACTAAATCAGAGAGCTATTGAAAT CTCCTTACTGTTCTGAAGATACACCCTATCGTTTTTGTTTAATTTAATAA TCAATACTGCTGTTAATTAAGCAAAATTTTAGTTCGAAGCGAGGGAGAGA ATACAAGGCATTAATTCCTTTGGCAATTCAACAAATGGTACATAAACTAG GAATGTGATTTTAAAATAAACGAAATAAGCATAGTCAGGCCTCACATGAG CAAAAGTAGGTATCAACGTAGTTTCATATTTGATTTGTTTATTTTGAATA ACGCTGATTGGCCATCAGGTGTATGCAGATCTAATATTCCAACAAAGAAA TGTAGCTTTTTGATAAAAACCCAAATATGTTTTGTGGCACTCATCTTTCC GCAGTCTTAGCTTTGTATCGAGCGATTCAAACGAAAATAAAAACATGAAG CCTCTCGACTGCAGGTAACTCAGTAGCCGCGAGAGGCGCAAAAAAACATC AAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5029713..5030223 | 1250..740 | 2540 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 5030280..5030567 | 744..457 | 1410 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 5031187..5031464 | 278..1 | 1375 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 5030625..5030805 | 457..277 | 905 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9142144..9142656 | 1252..740 | 2565 | 100 | Minus |
2R | 25286936 | 2R | 9142713..9143000 | 744..457 | 1425 | 99.7 | Minus |
2R | 25286936 | 2R | 9143620..9143897 | 278..1 | 1390 | 100 | Minus |
2R | 25286936 | 2R | 9143058..9143238 | 457..277 | 905 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9143343..9143855 | 1252..740 | 2565 | 100 | Minus |
2R | 25260384 | 2R | 9143912..9144199 | 744..457 | 1425 | 99.6 | Minus |
2R | 25260384 | 2R | 9144819..9145096 | 278..1 | 1390 | 100 | Minus |
2R | 25260384 | 2R | 9144257..9144437 | 457..277 | 905 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
baggins | 5453 | baggins BAGGINS 5453bp | 1580..1648 | 548..613 | 122 | 66.7 | Plus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 75..162 | 876..788 | 117 | 63.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5029713..5030222 | 741..1250 | 99 | <- | Minus |
chr2R | 5030284..5030567 | 457..740 | 99 | <- | Minus |
chr2R | 5030626..5030803 | 279..456 | 100 | <- | Minus |
chr2R | 5031187..5031464 | 1..278 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
shrb-RA | 1..681 | 101..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
shrb-RA | 1..681 | 101..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
shrb-RA | 1..681 | 101..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
shrb-RA | 1..681 | 101..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
shrb-RA | 1..681 | 101..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
shrb-RA | 14..1263 | 1..1250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
shrb-RA | 14..1263 | 1..1250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
shrb-RA | 18..1267 | 1..1250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
shrb-RA | 14..1263 | 1..1250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
shrb-RA | 18..1267 | 1..1250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9142146..9142655 | 741..1250 | 100 | <- | Minus |
2R | 9142717..9143000 | 457..740 | 100 | <- | Minus |
2R | 9143059..9143236 | 279..456 | 100 | <- | Minus |
2R | 9143620..9143897 | 1..278 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9142146..9142655 | 741..1250 | 100 | <- | Minus |
2R | 9142717..9143000 | 457..740 | 100 | <- | Minus |
2R | 9143059..9143236 | 279..456 | 100 | <- | Minus |
2R | 9143620..9143897 | 1..278 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9142146..9142655 | 741..1250 | 100 | <- | Minus |
2R | 9142717..9143000 | 457..740 | 100 | <- | Minus |
2R | 9143059..9143236 | 279..456 | 100 | <- | Minus |
2R | 9143620..9143897 | 1..278 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5029651..5030160 | 741..1250 | 100 | <- | Minus |
arm_2R | 5030222..5030505 | 457..740 | 100 | <- | Minus |
arm_2R | 5030564..5030741 | 279..456 | 100 | <- | Minus |
arm_2R | 5031125..5031402 | 1..278 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9143345..9143854 | 741..1250 | 100 | <- | Minus |
2R | 9143916..9144199 | 457..740 | 100 | <- | Minus |
2R | 9144258..9144435 | 279..456 | 100 | <- | Minus |
2R | 9144819..9145096 | 1..278 | 100 | Minus |
Translation from 100 to 780
> GH13992.pep MSFFGKMFGGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIA RKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQREALESANTNTA VLTTMKNAADALKRAHQNMDVDKVHDMMDDIAEQQDVAREISDAISNPVA FGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPTEDLPEKAKE KKKATTTTAVEDDDDPDMKQLLSWSN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12950-PA | 226 | GF12950-PA | 1..225 | 1..225 | 1122 | 97.3 | Plus |
Dana\GF11904-PA | 219 | GF11904-PA | 1..188 | 4..195 | 160 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10579-PA | 226 | GG10579-PA | 1..226 | 1..226 | 1136 | 97.8 | Plus |
Dere\GG15798-PA | 226 | GG15798-PA | 4..194 | 3..191 | 147 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19872-PA | 228 | GH19872-PA | 1..228 | 1..226 | 982 | 93 | Plus |
Dgri\GH15350-PA | 226 | GH15350-PA | 4..173 | 3..170 | 147 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
shrb-PA | 226 | CG8055-PA | 1..226 | 1..226 | 1135 | 100 | Plus |
Vps20-PC | 212 | CG4071-PC | 2..211 | 5..211 | 202 | 31.8 | Plus |
Vps20-PA | 212 | CG4071-PA | 2..211 | 5..211 | 202 | 31.8 | Plus |
Vps60-PB | 226 | CG6259-PB | 5..196 | 4..193 | 191 | 26.7 | Plus |
Vps60-PA | 226 | CG6259-PA | 5..196 | 4..193 | 191 | 26.7 | Plus |
CG5498-PB | 448 | CG5498-PB | 244..398 | 20..171 | 177 | 31 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19821-PA | 227 | GI19821-PA | 1..226 | 1..225 | 1029 | 93.4 | Plus |
Dmoj\GI19533-PA | 220 | GI19533-PA | 1..188 | 4..198 | 151 | 29.3 | Plus |
Dmoj\GI12953-PA | 226 | GI12953-PA | 4..193 | 3..190 | 144 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17464-PA | 231 | GL17464-PA | 1..231 | 1..226 | 1104 | 94.4 | Plus |
Dper\GL11590-PA | 212 | GL11590-PA | 3..185 | 2..195 | 149 | 30 | Plus |
Dper\GL25031-PA | 208 | GL25031-PA | 4..173 | 3..170 | 145 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20793-PA | 231 | GA20793-PA | 1..231 | 1..226 | 1104 | 94.4 | Plus |
Dpse\GA17936-PA | 212 | GA17936-PA | 3..185 | 2..195 | 149 | 30 | Plus |
Dpse\GA19474-PA | 228 | GA19474-PA | 4..194 | 3..191 | 148 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20627-PA | 226 | GM20627-PA | 1..226 | 1..226 | 1138 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10100-PA | 226 | GD10100-PA | 1..226 | 1..226 | 1138 | 98.2 | Plus |
Dsim\GD12393-PA | 226 | GD12393-PA | 4..194 | 3..191 | 147 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18577-PA | 228 | GJ18577-PA | 1..228 | 1..226 | 1045 | 93.9 | Plus |
Translation from 100 to 780
> GH13992.hyp MSFFGKMFGGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIA RKNASKNKRVALQALKKKKRLEKQLQQIDGTLSTIEMQREALESANTNTA VLTTMKNAADALKRAHQNMDVDKVHDMMDDIAEQQDVAREISDAISNPVA FGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPTEDLPEKAKE KKKATTTTAVEDDDDPDMKQLLSWSN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
shrb-PA | 226 | CG8055-PA | 1..226 | 1..226 | 1135 | 100 | Plus |
Vps20-PC | 212 | CG4071-PC | 2..211 | 5..211 | 202 | 31.8 | Plus |
Vps20-PA | 212 | CG4071-PA | 2..211 | 5..211 | 202 | 31.8 | Plus |
Vps60-PB | 226 | CG6259-PB | 5..196 | 4..193 | 191 | 26.7 | Plus |
Vps60-PA | 226 | CG6259-PA | 5..196 | 4..193 | 191 | 26.7 | Plus |