Clone GH14043 Report

Search the DGRC for GH14043

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:140
Well:43
Vector:pOT2
Associated Gene/TranscriptRca1-RA
Protein status:GH14043.pep: gold
Preliminary Size:1551
Sequenced Size:1543

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10800 2001-01-01 Release 2 assignment
CG10800 2001-09-19 Blastp of sequenced clone
CG10800 2003-01-01 Sim4 clustering to Release 3
Rca1 2008-04-29 Release 5.5 accounting
Rca1 2008-08-15 Release 5.9 accounting
Rca1 2008-12-18 5.12 accounting

Clone Sequence Records

GH14043.complete Sequence

1543 bp (1543 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058372

> GH14043.complete
GGCGGTCACACTGATCCGTACCCAAAAACAATCAACCGATGCGAAAAGCA
TAACAATTCGAAAGTTTAAAATTCGGTCAAGATGAGCGCCTATTATCGGC
GCGCGGCGTTGCGGAAGAAGAGCCCAAGCCGAGGGTCATCCTTCGAGTTG
GAGATGAACGAGTCTGGCTACACATCCTTCCTGGCGCTGCACAATTCCAC
CGCGGAGACGCCATTTTTATTGGAGGACGCTGAGGGCGAAAACTGTCGCA
ATGCATCGAATACCACAACATTCTTTCGGGGGCTGAACACGCCCAGTGGC
CACCAGGAGCAGGACCTTTACTGGGGCAAGCCCTATCCCAGAACACAGCC
CCAAAAGAAATTTTCCGCGGAGGAGGAGCCTTTCTCTATGACTCCGCGTC
TGCAGGATGAGCATAGTCTGCCCAAGCGACGCAAGAAACACTTTCAATCG
CCACACAGTAGCCCCAAGAAGTCCAAAAAGCTGCTCTTTCCCCACATAGA
AGAACCGCCCAAGAATCGCTTCTACGGCGGTGTCGAAAAGCTGGATATCG
TGGCCAAGCTGGCGCAATGGCAACCGGCACTGCAGTGCATACTGCGTCAT
GTGGGCGCCCACACGCTGGACGTGATGACCAAGGTATCGCCGGCCTGGAA
GCAGGCTGTTTATCGCAGCCAACGCGACTTGGAGCGCCTACAGAACCACC
GACTCAAATTGAATCTAACCAAAGAGAATCCTCACGTGCCCAAGCGGTGC
AGCCATGTGCCCAAGGCAAACCACACAGTGCCATTGCAGACCTCGAACCA
TAGCAGCCTGGCCAACAGCGCCGCCTCGCTAATGGACTCGGGCAACTCGA
GCATCCACCTGATGGACGTGGATGCCGGAAGGGTGCTGCGCGAGCAGACG
CAGCGCGTCAAGTGTCCGCGATGCGGTCGAGGCAGCCGGGTTTTCATAAG
CGAGGCGGCCAAGTGTGGCGAAAACCTATTGTCGCAAACTCTGCCTATTG
GACGTACAACCAGCACATTCCCCTGCATGACGGGTCCGCCTCTCAAACGC
TTCCTGTCCCTGGATCTTGACGAGGTCAGGACTTCACCGCAAGGACCGCC
ATATAACTTCGCCGAATGCACCAGTGTCATCTGCCAGTTTCGGTTCTGCG
TCAACTGTCTGTGCAAGTCGCATCCCGGCGAGCGTTGCCTGGTCACCGAA
CTGGACACACCATCCAAACTGATGATGCCACGGGAGCGACTGACGCCGCC
ACAACGTGCCCAGAACCGTGATCCGAAAATCACAAGGAAGAACTCGCTCA
AGCGGCTCTGCTTTTAGCTTTATCATAGGCTTTTAACTATTACGATTAGT
ATTCGATTTTTTTAAATCTCATTAATTTCGTATTATGTCCATCGCATTAA
GTTCCATTTCATCACGTACATTCATATATATGTTTTTAAATCGTTCCATG
TAAGGTTTGTCGGAATTCTGTACCTCTGCGAGATTAAGTATTTTTTACAC
ATGCAAAATATATAAATCATTTTTAGAAAAAAAAAAAAAAAAA

GH14043.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Rca1-RA 1553 Rca1-RA 18..1545 1..1528 7640 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6851422..6852947 1..1526 7615 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:50:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6852341..6853868 1..1528 7640 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6852341..6853868 1..1528 7640 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:34:26 has no hits.

GH14043.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:35:06 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6851422..6852947 1..1526 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:41:26 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
Rca1-RA 1..1236 82..1317 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:07:29 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
Rca1-RA 1..1236 82..1317 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:54:34 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
Rca1-RA 1..1236 82..1317 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:22 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
Rca1-RA 1..1236 82..1317 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:03 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
Rca1-RA 1..1236 82..1317 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:57:44 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
Rca1-RA 18..1543 1..1526 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:07:29 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
Rca1-RA 18..1543 1..1526 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:54:34 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
Rca1-RA 27..1552 1..1526 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:22 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
Rca1-RA 18..1543 1..1526 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:03 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
Rca1-RA 27..1552 1..1526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:35:06 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6852341..6853866 1..1526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:35:06 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6852341..6853866 1..1526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:35:06 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6852341..6853866 1..1526 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:54:34 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6852341..6853866 1..1526 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:15:35 Download gff for GH14043.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6852341..6853866 1..1526 100   Plus

GH14043.pep Sequence

Translation from 81 to 1316

> GH14043.pep
MSAYYRRAALRKKSPSRGSSFELEMNESGYTSFLALHNSTAETPFLLEDA
EGENCRNASNTTTFFRGLNTPSGHQEQDLYWGKPYPRTQPQKKFSAEEEP
FSMTPRLQDEHSLPKRRKKHFQSPHSSPKKSKKLLFPHIEEPPKNRFYGG
VEKLDIVAKLAQWQPALQCILRHVGAHTLDVMTKVSPAWKQAVYRSQRDL
ERLQNHRLKLNLTKENPHVPKRCSHVPKANHTVPLQTSNHSSLANSAASL
MDSGNSSIHLMDVDAGRVLREQTQRVKCPRCGRGSRVFISEAAKCGENLL
SQTLPIGRTTSTFPCMTGPPLKRFLSLDLDEVRTSPQGPPYNFAECTSVI
CQFRFCVNCLCKSHPGERCLVTELDTPSKLMMPRERLTPPQRAQNRDPKI
TRKNSLKRLCF*

GH14043.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15431-PA 339 GF15431-PA 74..339 143..411 1032 74.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10438-PA 411 GG10438-PA 1..411 1..411 2024 91.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13716-PA 416 GH13716-PA 1..416 1..411 708 45.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rca1-PA 411 CG10800-PA 1..411 1..411 2198 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23995-PA 438 GI23995-PA 1..438 1..411 691 45.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26189-PA 416 GL26189-PA 1..416 1..411 1254 61.2 Plus
Dper\GL23201-PA 318 GL23201-PA 2..317 10..379 596 41.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10566-PA 416 GA10566-PA 1..416 1..411 1241 60.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16226-PA 409 GM16226-PA 1..409 1..411 2085 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23434-PA 411 GD23434-PA 1..411 1..411 2116 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21279-PA 448 GJ21279-PA 1..448 1..411 777 45.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24784-PA 441 GK24784-PA 1..441 1..411 849 44.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14154-PA 412 GE14154-PA 1..412 1..411 2030 92.2 Plus

GH14043.hyp Sequence

Translation from 81 to 1316

> GH14043.hyp
MSAYYRRAALRKKSPSRGSSFELEMNESGYTSFLALHNSTAETPFLLEDA
EGENCRNASNTTTFFRGLNTPSGHQEQDLYWGKPYPRTQPQKKFSAEEEP
FSMTPRLQDEHSLPKRRKKHFQSPHSSPKKSKKLLFPHIEEPPKNRFYGG
VEKLDIVAKLAQWQPALQCILRHVGAHTLDVMTKVSPAWKQAVYRSQRDL
ERLQNHRLKLNLTKENPHVPKRCSHVPKANHTVPLQTSNHSSLANSAASL
MDSGNSSIHLMDVDAGRVLREQTQRVKCPRCGRGSRVFISEAAKCGENLL
SQTLPIGRTTSTFPCMTGPPLKRFLSLDLDEVRTSPQGPPYNFAECTSVI
CQFRFCVNCLCKSHPGERCLVTELDTPSKLMMPRERLTPPQRAQNRDPKI
TRKNSLKRLCF*

GH14043.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Rca1-PA 411 CG10800-PA 1..411 1..411 2198 100 Plus