Clone GH14088 Report

Search the DGRC for GH14088

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:140
Well:88
Vector:pOT2
Associated Gene/TranscriptSer7-RA
Protein status:GH14088.pep: gold
Preliminary Size:1389
Sequenced Size:1422

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2045 2001-01-01 Release 2 assignment
CG2045 2001-07-04 Blastp of sequenced clone
CG2045 2003-01-01 Sim4 clustering to Release 3
Ser7 2008-04-29 Release 5.5 accounting
Ser7 2008-08-15 Release 5.9 accounting
Ser7 2008-12-18 5.12 accounting

Clone Sequence Records

GH14088.complete Sequence

1422 bp (1422 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051477

> GH14088.complete
GGGACGCAGCTTTGCTAGCGACTCGAGAATCAATCGAGCGGAAAATAGGA
AAATAGAAAATTGATAGGAATTAGAAAATAGGAAAACCTCGCAAAATGCT
CCTGCTGATACCGCTTTTCCTGACCCTTTTGGGGGCTGAGGCCCAGCAAT
TTGGCAAAGCTATCATGCATTTTGGCAACTGCAACTCGGTGGAATTCGGT
AGGGGCACCTGTATCGAGAAGAAGGACTGCGACTTTTATGCCGTAGATAA
ACTTATGGAATTGGCCAGCAAACAACAGTGCTTCTCCCGCCAGCGACCCG
ATCTGGTTTGCTGCCCCCGCGAGACGAATATTATACCGCCATTGGCACCC
AGGATCAGTAATGGGACCACTAATGCCACGAGCAGCACCACAACGCTGAA
ACTGCTGCCTCGCACCACGCCACGCCCACCCAGCGGTATCGACCAACTGC
CCGAGCATCCGTACTGCGGCTCCGCCTTTTCGTTTCGCTTGGTCGGTGGT
CATAATACCGGACTCTTCGAGTTCCCGTGGACCACTCTGCTGGAGTACGA
GACAGTGAGCGGTGGCAAGGACTATGCGTGCGGCGCATCCTTTATCGCCC
AGAGATGGCTCTTAACGGCCGCCCACTGCATTCACACAATGGGCAGGAAT
CTCACCGCAGCCATTTTGGGTGAATGGAATCGGGACACCGATCCGGATTG
CGAGAATGATTTGAATGGCGTACGCGAATGTGCTCCGCCGCATATCCGGG
TGACCATCGATCGAATATTGCCGCATGCGCAGTACTCGGAATTGAACTAT
AGAAACGATATAGCCCTGCTGCGTTTATCACGTCCGGTGAACTGGCTGCA
GATGCAGAATCTGGAGCCCGTCTGTTTGCCACCGCAGAGGGGCAGGTATG
CCAATCAGCTGGCCGGCTCAGCCGCCGATGTTTCCGGCTGGGGCAAGACC
GAGTCCAGCGGCAGCAGCAAGATCAAGCAAAAGGCGATGCTGCACATCCA
GCCGCAGGATCAGTGCCAGGAGGCGTTTTACAAGGACACCAAGATTACGC
TCGCCGATAGTCAGATGTGTGCCGGCGGCGAGATTGGCGTTGATTCCTGC
AGTGGCGACTCCGGCGGACCACTGACCGTAGAGGCAAACACGGCGAGCGG
CAATCGATATGTCTATCTGGCCGGCGTGGTCTCCATTGGACGGAAACACT
GTGGCACAGCGTTGTTTTCCGGAATTTACACCCGGGTCAGCAGCTACATG
GACTGGATAGAAAGCACCATTCGAGCCAATCGCATTTAAGCGACTCTCGA
CTTTCGTTTCCGTTTTCGGCTATTTTTGGGCACCCATAACGCAAAGTCAA
GCTCATTGTGACCTTCAATGACATTAAAAGCAATTTTTTTGAAATACATA
CAATAAAAAAAAAAAAAAAAAA

GH14088.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7.a 1738 Ser7.a 107..1512 1..1405 6990 99.9 Plus
Ser7-RA 1544 Ser7-RA 107..1512 1..1405 6990 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9757647..9758746 305..1404 5485 99.9 Plus
chrX 22417052 chrX 9757135..9757285 157..307 755 100 Plus
chrX 22417052 chrX 9756917..9757073 1..156 735 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:50:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9865971..9867071 305..1405 5505 100 Plus
X 23542271 X 9865459..9865609 157..307 755 100 Plus
X 23542271 X 9865241..9865397 1..156 735 99.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9874069..9875169 305..1405 5505 100 Plus
X 23527363 X 9873557..9873707 157..307 755 100 Plus
X 23527363 X 9873339..9873495 1..156 745 99.3 Plus
Blast to na_te.dros performed on 2019-03-16 17:45:20 has no hits.

GH14088.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:46:16 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9756917..9757073 1..156 99 -> Plus
chrX 9757135..9757283 157..305 100 -> Plus
chrX 9757648..9758746 306..1404 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:41:39 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 1..1194 96..1289 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:59 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 1..1194 96..1289 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:00:50 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 1..1194 96..1289 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:11 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 1..1194 96..1289 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:49 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 1..1194 96..1289 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:16 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 24..1428 1..1404 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:59 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 24..1428 1..1404 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:00:50 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 9..1413 1..1404 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:12 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 24..1428 1..1404 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:49 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 9..1413 1..1404 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:16 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
X 9865459..9865607 157..305 100 -> Plus
X 9865241..9865397 1..156 99 -> Plus
X 9865972..9867070 306..1404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:16 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
X 9865459..9865607 157..305 100 -> Plus
X 9865241..9865397 1..156 99 -> Plus
X 9865972..9867070 306..1404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:16 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
X 9865459..9865607 157..305 100 -> Plus
X 9865241..9865397 1..156 99 -> Plus
X 9865972..9867070 306..1404 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:00:50 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9759274..9759430 1..156 99 -> Plus
arm_X 9759492..9759640 157..305 100 -> Plus
arm_X 9760005..9761103 306..1404 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:02 Download gff for GH14088.complete
Subject Subject Range Query Range Percent Splice Strand
X 9874070..9875168 306..1404 100   Plus
X 9873339..9873495 1..156 99 -> Plus
X 9873557..9873705 157..305 100 -> Plus

GH14088.pep Sequence

Translation from 95 to 1288

> GH14088.pep
MLLLIPLFLTLLGAEAQQFGKAIMHFGNCNSVEFGRGTCIEKKDCDFYAV
DKLMELASKQQCFSRQRPDLVCCPRETNIIPPLAPRISNGTTNATSSTTT
LKLLPRTTPRPPSGIDQLPEHPYCGSAFSFRLVGGHNTGLFEFPWTTLLE
YETVSGGKDYACGASFIAQRWLLTAAHCIHTMGRNLTAAILGEWNRDTDP
DCENDLNGVRECAPPHIRVTIDRILPHAQYSELNYRNDIALLRLSRPVNW
LQMQNLEPVCLPPQRGRYANQLAGSAADVSGWGKTESSGSSKIKQKAMLH
IQPQDQCQEAFYKDTKITLADSQMCAGGEIGVDSCSGDSGGPLTVEANTA
SGNRYVYLAGVVSIGRKHCGTALFSGIYTRVSSYMDWIESTIRANRI*

GH14088.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19169-PA 409 GF19169-PA 20..408 21..396 1259 65.7 Plus
Dana\GF23198-PA 392 GF23198-PA 4..392 2..394 656 38.7 Plus
Dana\GF18202-PA 393 GF18202-PA 26..392 26..393 580 37 Plus
Dana\GF16252-PA 399 GF16252-PA 25..399 22..394 532 34.7 Plus
Dana\GF17682-PA 394 GF17682-PA 20..393 7..393 481 36.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18327-PA 401 GG18327-PA 15..401 13..397 1910 90.4 Plus
Dere\GG16913-PA 392 GG16913-PA 10..392 7..394 639 37.1 Plus
Dere\GG12275-PA 392 GG12275-PA 5..392 7..394 628 37.6 Plus
Dere\GG11216-PA 400 GG11216-PA 23..399 17..393 580 35.1 Plus
Dere\GG11217-PA 407 GG11217-PA 8..407 2..394 579 34.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11805-PA 376 GH11805-PA 17..370 16..392 961 50 Plus
Dgri\GH14281-PA 578 GH14281-PA 217..577 23..393 649 38.2 Plus
Dgri\GH17229-PA 387 GH17229-PA 5..387 7..394 628 36.4 Plus
Dgri\GH17456-PA 395 GH17456-PA 5..395 9..394 548 32.3 Plus
Dgri\GH19111-PA 344 GH19111-PA 14..343 56..393 547 37.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-PA 397 CG2045-PA 1..397 1..397 2128 100 Plus
ea-PA 392 CG4920-PA 6..392 4..394 643 37.3 Plus
MP1-PA 390 CG1102-PA 26..390 26..394 621 38.6 Plus
MP1-PC 399 CG1102-PC 26..399 26..394 616 38.5 Plus
SPE-PA 400 CG16705-PA 9..398 3..392 608 36.3 Plus
MP1-PE 400 CG1102-PE 26..400 26..394 601 37.4 Plus
ea-PB 261 CG4920-PB 3..261 138..394 575 44.1 Plus
Sp7-PF 391 CG3066-PF 29..390 27..393 487 35.4 Plus
Sp7-PE 391 CG3066-PE 29..390 27..393 487 35.4 Plus
Sp7-PA 391 CG3066-PA 29..390 27..393 487 35.4 Plus
grass-PA 335 CG5896-PA 69..333 124..395 421 35.6 Plus
grass-PB 377 CG5896-PB 111..375 124..395 421 35.6 Plus
CG9733-PB 417 CG9733-PB 122..417 88..394 418 36.6 Plus
CG9733-PA 418 CG9733-PA 123..418 88..394 418 36.6 Plus
CG9737-PA 424 CG9737-PA 33..414 33..396 414 32.7 Plus
CG31219-PB 345 CG31219-PB 68..344 111..393 411 35.6 Plus
CG3505-PA 360 CG3505-PA 5..360 6..394 399 30.1 Plus
CG11313-PC 367 CG11313-PC 54..366 51..393 380 31.9 Plus
CG11313-PD 370 CG11313-PD 54..369 51..393 373 31.6 Plus
CG4386-PA 372 CG4386-PA 72..356 77..390 368 34 Plus
CG16710-PB 372 CG16710-PB 91..362 118..388 368 32.5 Plus
CG12133-PB 340 CG12133-PB 45..321 116..392 366 33.3 Plus
l(2)k05911-PC 639 CG31728-PC 342..639 74..393 361 32.2 Plus
CG11836-PI 281 CG11836-PI 3..274 86..392 360 30.9 Plus
CG11836-PJ 333 CG11836-PJ 55..326 86..392 360 30.9 Plus
CG1299-PB 442 CG1299-PB 95..434 29..388 357 30.9 Plus
CG1299-PA 511 CG1299-PA 164..503 29..388 357 30.9 Plus
CG18735-PA 364 CG18735-PA 82..316 131..393 351 35.3 Plus
CG8172-PE 545 CG8172-PE 288..540 122..392 347 34.3 Plus
CG8172-PF 561 CG8172-PF 304..556 122..392 347 34.3 Plus
CG31220-PB 363 CG31220-PB 83..362 112..393 345 32.5 Plus
CG8172-PD 371 CG8172-PD 116..366 124..392 343 34.2 Plus
CG5909-PA 381 CG5909-PA 24..381 28..393 326 27.9 Plus
CG7432-PB 721 CG7432-PB 310..720 2..393 326 28 Plus
CG17572-PA 385 CG17572-PA 118..378 118..388 323 31.4 Plus
psh-PA 394 CG6367-PA 30..388 29..392 320 29.6 Plus
CG32260-PC 395 CG32260-PC 108..392 92..392 316 31.8 Plus
CG32260-PA 575 CG32260-PA 288..572 92..392 316 31.8 Plus
CG10232-PD 509 CG10232-PD 248..508 124..393 315 32.9 Plus
CG3355-PA 314 CG3355-PA 52..302 110..388 312 33.4 Plus
CG11836-PF 223 CG11836-PF 10..216 160..392 308 31.2 Plus
CG11836-PE 223 CG11836-PE 10..216 160..392 308 31.2 Plus
CG11836-PG 223 CG11836-PG 10..216 160..392 308 31.2 Plus
CG11836-PC 223 CG11836-PC 10..216 160..392 308 31.2 Plus
CG11836-PA 223 CG11836-PA 10..216 160..392 308 31.2 Plus
CG11836-PB 223 CG11836-PB 10..216 160..392 308 31.2 Plus
CG30087-PA 277 CG30087-PA 27..277 121..395 304 31.3 Plus
CG30090-PA 291 CG30090-PA 27..280 122..395 304 30.5 Plus
CG9294-PB 352 CG9294-PB 61..336 92..390 302 31 Plus
CG8870-PA 356 CG8870-PA 74..343 121..394 298 31.8 Plus
CG4613-PC 374 CG4613-PC 129..367 124..393 293 32.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15987-PA 407 GI15987-PA 31..398 24..395 1076 54 Plus
Dmoj\GI24877-PA 392 GI24877-PA 1..391 1..393 648 37.4 Plus
Dmoj\GI10853-PA 285 GI10853-PA 9..285 118..394 565 43.4 Plus
Dmoj\GI22780-PA 412 GI22780-PA 6..406 3..388 557 34.7 Plus
Dmoj\GI24127-PA 389 GI24127-PA 22..389 28..394 497 36.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16377-PA 417 GL16377-PA 20..417 14..397 1282 63.5 Plus
Dper\GL23240-PA 395 GL23240-PA 33..394 23..393 623 38.7 Plus
Dper\GL13652-PA 401 GL13652-PA 22..401 14..394 573 36.4 Plus
Dper\GL12316-PA 391 GL12316-PA 15..390 15..393 560 35.3 Plus
Dper\GL12453-PA 383 GL12453-PA 114..382 118..393 461 40.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15202-PA 417 GA15202-PA 20..417 14..397 1272 61.3 Plus
Dpse\GA18526-PA 395 GA18526-PA 33..394 23..393 624 38.7 Plus
Dpse\GA14092-PA 403 GA14092-PA 24..403 14..394 575 36.6 Plus
Dpse\GA10711-PA 391 GA10711-PA 3..390 1..393 559 34.2 Plus
Dpse\GA15903-PA 383 GA15903-PA 114..382 118..393 461 40.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11390-PA 397 GM11390-PA 1..397 1..397 2070 96.2 Plus
Dsec\GM24220-PA 402 GM24220-PA 41..402 23..394 630 38.3 Plus
Dsec\GM26516-PA 400 GM26516-PA 22..399 16..393 586 35 Plus
Dsec\GM26518-PA 406 GM26518-PA 8..406 2..394 560 33.9 Plus
Dsec\GM10972-PA 391 GM10972-PA 122..390 118..393 472 41.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19011-PA 392 GD19011-PA 6..392 4..394 639 37.2 Plus
Dsim\GD19715-PA 392 GD19715-PA 5..392 2..394 619 37.3 Plus
Dsim\GD21025-PA 400 GD21025-PA 22..399 16..393 592 35.5 Plus
Dsim\GD21026-PA 406 GD21026-PA 8..406 2..394 558 33.9 Plus
Dsim\GD19946-PA 391 GD19946-PA 122..390 118..393 475 41.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18716-PA 398 GJ18716-PA 33..390 25..395 996 50.9 Plus
Dvir\GJ24520-PA 877 GJ24520-PA 516..876 23..393 643 38.8 Plus
Dvir\GJ14460-PA 396 GJ14460-PA 22..396 26..394 561 36.2 Plus
Dvir\GJ22783-PA 401 GJ22783-PA 22..400 22..393 538 34.3 Plus
Dvir\GJ19441-PA 371 GJ19441-PA 26..370 21..395 491 35.9 Plus
Dvir\GJ24520-PA 877 GJ24520-PA 201..504 95..392 269 30.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25360-PA 410 GK25360-PA 21..408 14..396 1154 55.6 Plus
Dwil\GK25361-PA 404 GK25361-PA 21..402 14..396 1114 54.1 Plus
Dwil\GK11130-PA 392 GK11130-PA 31..392 23..394 631 38.7 Plus
Dwil\GK10951-PA 391 GK10951-PA 1..390 1..393 592 35.9 Plus
Dwil\GK13188-PA 395 GK13188-PA 100..395 103..394 492 37 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Ser7-PA 402 GE17813-PA 13..402 13..397 1951 92.1 Plus
Dyak\GE24296-PA 392 GE24296-PA 31..392 23..394 628 38.3 Plus
Dyak\GE10383-PA 404 GE10383-PA 7..404 1..394 609 36.1 Plus
Dyak\GE25404-PA 376 GE25404-PA 3..376 6..394 590 36.7 Plus
Dyak\GE10382-PA 400 GE10382-PA 23..399 17..393 576 34.7 Plus

GH14088.hyp Sequence

Translation from 95 to 1288

> GH14088.hyp
MLLLIPLFLTLLGAEAQQFGKAIMHFGNCNSVEFGRGTCIEKKDCDFYAV
DKLMELASKQQCFSRQRPDLVCCPRETNIIPPLAPRISNGTTNATSSTTT
LKLLPRTTPRPPSGIDQLPEHPYCGSAFSFRLVGGHNTGLFEFPWTTLLE
YETVSGGKDYACGASFIAQRWLLTAAHCIHTMGRNLTAAILGEWNRDTDP
DCENDLNGVRECAPPHIRVTIDRILPHAQYSELNYRNDIALLRLSRPVNW
LQMQNLEPVCLPPQRGRYANQLAGSAADVSGWGKTESSGSSKIKQKAMLH
IQPQDQCQEAFYKDTKITLADSQMCAGGEIGVDSCSGDSGGPLTVEANTA
SGNRYVYLAGVVSIGRKHCGTALFSGIYTRVSSYMDWIESTIRANRI*

GH14088.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-PA 397 CG2045-PA 1..397 1..397 2128 100 Plus
ea-PA 392 CG4920-PA 6..392 4..394 643 37.3 Plus
MP1-PA 390 CG1102-PA 26..390 26..394 621 38.6 Plus
MP1-PC 399 CG1102-PC 26..399 26..394 616 38.5 Plus
SPE-PA 400 CG16705-PA 9..398 3..392 608 36.3 Plus