Clone GH14252 Report

Search the DGRC for GH14252

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:142
Well:52
Vector:pOT2
Associated Gene/TranscriptMf-RD
Protein status:GH14252.pep: gold
Preliminary Size:1557
Sequenced Size:1389

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6803 2001-09-19 Blastp of sequenced clone
CG6803 2003-01-01 Sim4 clustering to Release 3
Zeelin1 2008-04-29 Release 5.5 accounting

Clone Sequence Records

GH14252.complete Sequence

1389 bp (1389 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058374

> GH14252.complete
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGATCGCTATTTTT
TAGGAGTAAATTTAAATTCGAACGAGTTCAACGATTTTTTCGTGAACAGA
ACAAAACAAATCGATCAAAATGTTCAAAAACCACTTGGAAATGATTGGGC
GCAATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGG
TCCCTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTC
TCGTCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATG
ACGAGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATAT
CTGCCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGA
TCATCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCT
GGAATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCT
CGCTATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGT
GCCCCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGG
CTCGTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGC
AGCGAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGT
GCCACGCGGAGGACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGT
TCACGCGGCCCAGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTC
TTTGAACGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCT
GAGCCCCAGCCCCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCTTCT
GGTGGGACGTGGATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCCCGT
GCCTCGAGCCCCGTGGCCCGGGATTCGTACTTGTCGCCGGTGAAGAACCG
CTACTTGTGGTCCAAGCACCCAGCTAGACCCTTGACACCTCACCGCTCAA
TTTTGTAAACGAACGAAACAACGAACTACACACCAACTAAATAACATCCT
GAAGAACTAAAACAACGAATGCATCACACAAGGGGCCCCCAAAACAATGA
CAACCTGCTTTGGAGTAGATCAGTAGCAAAAGGCTTTGCAAGTCTTAATA
TCCGTGAAAAACGTTTGAATTTTTTCAAAACTGCAAGAACTCCCCTCGGA
ACGAGAAAACAACCATCACTTTCGTCTGGGGTTCTCAAAATATTTGCCAA
GAAGTGCGTAATTCCCGTAGAAAAAAAAAAAAAAAAAAA

GH14252.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Mf.e 2192 Mf.e 267..1273 84..1090 5035 100 Plus
Mf-RJ 1992 Mf-RJ 64..1070 84..1090 5035 100 Plus
Mf-RB 2336 Mf-RB 254..1028 84..858 3875 100 Plus
Mf-RB 2336 Mf-RB 1586..1878 1089..1381 1465 100 Plus
Mf.e 2192 Mf.e 1443..1735 1089..1381 1465 100 Plus
Mf-RJ 1992 Mf-RJ 1240..1532 1089..1381 1465 100 Plus
Mf-RB 2336 Mf-RB 1184..1416 858..1090 1165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10995722..10996003 1370..1089 1410 100 Minus
chr3R 27901430 chr3R 10997229..10997459 1088..858 1155 100 Minus
chr3R 27901430 chr3R 11002908..11003118 470..260 1055 100 Minus
chr3R 27901430 chr3R 10998765..10998973 858..650 1045 100 Minus
chr3R 27901430 chr3R 11003666..11003808 261..119 700 99.3 Minus
chr3R 27901430 chr3R 11000813..11000924 650..539 560 100 Minus
chr3R 27901430 chr3R 11000991..11001066 542..467 365 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:51:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15171082..15171374 1381..1089 1465 100 Minus
3R 32079331 3R 15172600..15172830 1088..858 1155 100 Minus
3R 32079331 3R 15178280..15178490 470..260 1055 100 Minus
3R 32079331 3R 15174136..15174344 858..650 1045 100 Minus
3R 32079331 3R 15179038..15179180 261..119 715 100 Minus
3R 32079331 3R 15176184..15176295 650..539 560 100 Minus
3R 32079331 3R 15176362..15176437 542..467 365 98.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14911913..14912205 1381..1089 1465 100 Minus
3R 31820162 3R 14913431..14913661 1088..858 1155 100 Minus
3R 31820162 3R 14919111..14919321 470..260 1055 100 Minus
3R 31820162 3R 14914967..14915175 858..650 1045 100 Minus
3R 31820162 3R 14919869..14920011 261..119 715 100 Minus
3R 31820162 3R 14917015..14917126 650..539 560 100 Minus
3R 31820162 3R 14917193..14917268 542..467 365 98.6 Minus
3R 31820162 3R 14921039..14921073 118..84 175 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:27:10 has no hits.

GH14252.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:27:51 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10995722..10996003 1089..1370 100 <- Minus
chr3R 10997229..10997459 858..1088 100 <- Minus
chr3R 10998766..10998972 651..857 100 <- Minus
chr3R 11000813..11000922 541..650 100 <- Minus
chr3R 11000993..11001062 471..540 100 <- Minus
chr3R 11002908..11003117 261..470 100 <- Minus
chr3R 11003667..11003808 119..260 99 <- Minus
chr3R 11004836..11004870 84..118 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:42:06 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 1..939 170..1108 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:42 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 1..939 170..1108 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:44:46 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 1..939 170..1108 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:54 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 1..939 170..1108 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:31:42 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 1..939 170..1108 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:22 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 26..1315 80..1370 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:42 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 26..1315 80..1370 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:46 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 26..1315 80..1370 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:55 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 26..1315 80..1370 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:31:42 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 26..1315 80..1370 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:51 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15176184..15176293 541..650 100 <- Minus
3R 15176364..15176433 471..540 100 <- Minus
3R 15178280..15178489 261..470 100 <- Minus
3R 15179039..15179180 119..260 100 <- Minus
3R 15180208..15180237 89..118 100 <- Minus
3R 15174137..15174343 651..857 100 <- Minus
3R 15171093..15171374 1089..1370 100 <- Minus
3R 15172600..15172830 858..1088 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:51 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15176184..15176293 541..650 100 <- Minus
3R 15176364..15176433 471..540 100 <- Minus
3R 15178280..15178489 261..470 100 <- Minus
3R 15179039..15179180 119..260 100 <- Minus
3R 15180208..15180237 89..118 100 <- Minus
3R 15174137..15174343 651..857 100 <- Minus
3R 15171093..15171374 1089..1370 100 <- Minus
3R 15172600..15172830 858..1088 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:51 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15176184..15176293 541..650 100 <- Minus
3R 15176364..15176433 471..540 100 <- Minus
3R 15178280..15178489 261..470 100 <- Minus
3R 15179039..15179180 119..260 100 <- Minus
3R 15180208..15180237 89..118 100 <- Minus
3R 15174137..15174343 651..857 100 <- Minus
3R 15171093..15171374 1089..1370 100 <- Minus
3R 15172600..15172830 858..1088 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:46 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11002086..11002155 471..540 100 <- Minus
arm_3R 11004002..11004211 261..470 100 <- Minus
arm_3R 11004761..11004902 119..260 100 <- Minus
arm_3R 11005930..11005959 89..118 100 <- Minus
arm_3R 10999859..11000065 651..857 100 <- Minus
arm_3R 10996815..10997096 1089..1370 100 <- Minus
arm_3R 10998322..10998552 858..1088 100 <- Minus
arm_3R 11001906..11002015 541..650 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:07 Download gff for GH14252.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14919111..14919320 261..470 100 <- Minus
3R 14919870..14920011 119..260 100 <- Minus
3R 14921039..14921068 89..118 100 <- Minus
3R 14911924..14912205 1089..1370 100 <- Minus
3R 14913431..14913661 858..1088 100 <- Minus
3R 14914968..14915174 651..857 100 <- Minus
3R 14917015..14917124 541..650 100 <- Minus
3R 14917195..14917264 471..540 100 <- Minus

GH14252.pep Sequence

Translation from 169 to 1107

> GH14252.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKARRSASPFRPARTTRAGSEPYVPPPSYWNREGSVPRGGPS
VFDRATSLAPFTRPSFRASSLEPLDELFERLPIFHPRNRFRDLLSPSPNL
PISSIVRDPFWWDVDDLVPFRATSVPRASSPVARDSYLSPVKNRYLWSKH
PARPLTPHRSIL*

GH14252.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17159-PA 370 GF17159-PA 1..365 1..308 1347 77.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20880-PA 365 GG20880-PA 1..364 1..312 1511 84.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14549-PA 367 GH14549-PA 1..362 1..308 1337 78 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-PD 312 CG6803-PD 1..312 1..312 1672 100 Plus
Mf-PJ 313 CG6803-PJ 1..312 1..312 1648 98.7 Plus
Mf-PF 313 CG6803-PF 1..312 1..312 1648 98.7 Plus
Mf-PO 310 CG6803-PO 1..310 1..312 1644 99 Plus
Mf-PM 364 CG6803-PM 1..364 1..312 1609 85.7 Plus
Mf-PL 364 CG6803-PL 1..364 1..312 1609 85.7 Plus
Mf-PB 365 CG6803-PB 1..364 1..312 1585 84.6 Plus
Mf-PI 230 CG6803-PI 1..229 1..229 1221 100 Plus
Mf-PH 236 CG6803-PH 1..229 1..229 1221 100 Plus
Mf-PE 166 CG6803-PE 1..164 1..164 869 99.4 Plus
Mf-PQ 168 CG6803-PQ 1..162 1..162 858 98.8 Plus
Mf-PC 168 CG6803-PC 1..162 1..162 858 98.8 Plus
Mf-PN 157 CG6803-PN 1..156 1..163 802 94.5 Plus
Mf-PG 157 CG6803-PG 1..156 1..163 802 94.5 Plus
Mf-PA 157 CG6803-PA 1..156 1..163 802 94.5 Plus
Mf-PP 119 CG6803-PP 1..100 1..100 534 100 Plus
Mf-PK 119 CG6803-PK 1..100 1..100 534 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23663-PA 367 GI23663-PA 1..362 1..308 1470 82.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21688-PA 367 GL21688-PA 1..362 1..308 1454 81.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19873-PC 312 GA19873-PC 1..312 1..312 1557 96.8 Plus
Dpse\GA19873-PA 313 GA19873-PA 1..308 1..308 1533 96.4 Plus
Dpse\GA19873-PB 367 GA19873-PB 1..362 1..308 1454 81.8 Plus
Dpse\GA19873-PD 168 GA19873-PD 1..162 1..162 823 96.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25804-PA 367 GM25804-PA 1..367 1..312 1516 84.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20380-PA 236 GD20380-PA 1..229 1..229 1179 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23223-PA 363 GJ23223-PA 1..358 1..308 1472 82.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13979-PA 368 GK13979-PA 1..363 1..308 1433 80.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26409-PA 313 GE26409-PA 1..312 1..312 1570 97.8 Plus

GH14252.hyp Sequence

Translation from 169 to 1107

> GH14252.hyp
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKARRSASPFRPARTTRAGSEPYVPPPSYWNREGSVPRGGPS
VFDRATSLAPFTRPSFRASSLEPLDELFERLPIFHPRNRFRDLLSPSPNL
PISSIVRDPFWWDVDDLVPFRATSVPRASSPVARDSYLSPVKNRYLWSKH
PARPLTPHRSIL*

GH14252.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-PD 312 CG6803-PD 1..312 1..312 1672 100 Plus
Mf-PJ 313 CG6803-PJ 1..312 1..312 1648 98.7 Plus
Mf-PF 313 CG6803-PF 1..312 1..312 1648 98.7 Plus
Mf-PO 310 CG6803-PO 1..310 1..312 1644 99 Plus
Mf-PM 364 CG6803-PM 1..364 1..312 1609 85.7 Plus