GH14260.complete Sequence
2431 bp (2431 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069133
> GH14260.complete
AACAATGCCTGATTTTTTTGTCAGCCTGAAAAGCAGCGAGGAAAAACTTG
AATTTCGTCTGTAAAACATATCTAATCGGAACCAAGCCACTGAAAAAGTC
GTAGTTTAGGCTAAATAAACGAGAAATCAACGAGTGAAACTAATTTCTAT
CTGTGGACAGAACGCCCCCGCACCTATTTTTGTGCTGAGGAACAAGCGAA
GCAGCGACGCACAATTCAGAAATTTGCAAACCGGTTTTCGGCGCAGAAAC
ACCCACTCGATCGTCCAAGAGTCAAGCGGAGAACAGTGAAAACATACATT
ATAAGGATCAATTTATAAAAGCAAAGCCGCAACAATCATGAACACTGGAA
TCTCCTTAAACGAGCGCTTTACGCAGATGCAGTCAAAGCAGCCGCCACAG
GGACGCGGTCGCAGCCGCTCCAGGAGCAGGAGTCGCCGCATTGTGAGCAG
CGGAGCCGGAAATCAAGGAATGTCCGCGGTCAACTCTAGGCTGCTGAATG
AATTCAAGAGGCTCCACACCGTTCAGACGGCCCTCAAACTGAAGCGCGTA
CGTGTTTCCTAAAAACCGAATAATGCAACCAGGCATCGGAAAGCGACCTG
ATCCGTAGGACAGGTTTATGTCTGACAGGCTTGGATTACCCGGAGGAGAG
GGGTCGGACTATGCTGTCGAGAAAAGTGCGCCTTCTGCGTGGTACATAAA
AACCCTACAGACTCTCAGACTCTCTCTCTATCCCTTGATCTTGAACTCCA
ACACTGCAGCAGCGTACTGACACCAAAACTTCCACACAACCTTATGCCTC
CTTACAGAGAAGCTTACGGACCACCGCAGTCAGCGGTCGTGGACCACGCG
TCGCCGGCGTCAAGTCGCTGCGACTGGCGCCCAACGGGAAGCCCATACGG
TCCAACAACGTGACCAGGGTAGCAACGTAAGCATCTTGCCTATAATCGCG
CTCAACTATCAATCCACTGCAACATCTCTGTACTTCTTCGTTAATCGCTC
AGGATGCGTGCCGATCTAGTGGCAAGCGGCAATGCCGCACGCAATCGCCG
CAGCGGCAGCAGCATGCGCAATGTCCCCGCCACTAACGGTGGTGGAGGCG
GACTTCGGCAGCGGCTAGGACAGCGCCGCCCTTCTGTGGGCGGTGCCGCC
GAGCGCGTTGAGCGTCGTCAGCGACAGCAGCAGCAAGCCCCACGAGGACG
TTCCCGCTCTCAGTCCCGTTCGCGCCACCCGCAAATACAGCGTGTGGACA
GAGCACGTTCCCAAAGCCGTGGACGCAGCATTGGGCGTTCCCAGAGCCGC
AATCGCGATCGCTCCGCCCAGGGCCGAGTTCCAGTGAAACAGCGGCTTTC
AGTCAAGCACCGCCTTGGCGTGCGAACCGGCCAGAGAAACAACCAGGCCA
AGATCCCACCGCAGCGCCGGGCACCAAGCCAAATTCGAGGTGTGGCAGGC
GGACGGGTCGAGAAGCGTCGTAGTGCTCAGATTTCCCAAAAGAAGGGAGT
TTCCGCCTCGATTGCCGGACGTCAAGGACGACCACGTAGAAGATCTGTTG
CAAGAAACGCTGCTTCTAGCAGTGGGGCAGTTAACAATTCTGCTTCTGCT
CGTCGCTCACGCTCGCGCAATCGTGCTGCCGCCGTCGCTGCTGCCGCTAT
CGCCGCTACTGTTCAGGGCCGGGCTAATCCTCGCCAGAGACGCGGACGCA
GTGCAGGCGCTGCCAAGGGCAAGATCATCAGAAATGGTAAAGCTGACAAA
AACGCGAAGGTCAAGGCGACAAACGGTGTCAAAAGTGGCCCGCAGCAACA
GGTTCGACGGGGACGCAGTCGTAGTCGTAAGCCTACAGGTAAAAGCGAGA
CAAGTGGCCAGGAGACAAACCGGACTGGATCTGGAAATAGGCACTTGAAA
CTCAAAATTGACATATTTTTGTCTCTACTTTCTACTTACACTCTTGATTA
ACATGTTTTCTCTGTTTAATAGGCAAACCACAGCGTCCAGAGGTTAAGCG
CGAGGATCTTGACATGGAACTGGATCAGTATATGTCCACCACTAAGTCGG
AGATGGACTACTTGCTGAAGTAAACACAAGTAGATTGGACCACAAACTAT
TGAATTAAAAACAATTGAATGAACAGAATGTAACAACCACCGGCTATAGG
CAGATGTTTCTCTCGTTGCACTAAGTTACCGCCTAGTTTTAAAATATTTC
TAAGTTTTAAACCATGTTAAAAGCGTCCAAAAAGAGCGCTTAGGCATAGA
GATGTTCTCGTGTATATATGGCAAGTTCTAATATAATAAGTAAATATGGT
CGAGAATTGTATAGTTCATGAATGATATTGTTAATCGCAATTCCGAAATA
CAAACTATTCATTGCTCAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GH14260.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9775-RD | 2552 | CG9775-RD | 76..2450 | 1..2375 | 11875 | 100 | Plus |
CG9775-RA | 2108 | CG9775-RA | 768..1608 | 1003..1843 | 4190 | 99.8 | Plus |
CG9775-RC | 1749 | CG9775-RC | 513..1353 | 1003..1843 | 4190 | 99.8 | Plus |
CG9775-RA | 2108 | CG9775-RA | 102..648 | 1..547 | 2735 | 100 | Plus |
CG9775-RA | 2108 | CG9775-RA | 1602..2006 | 1971..2375 | 2025 | 100 | Plus |
CG9775-RC | 1749 | CG9775-RC | 1347..1749 | 1971..2373 | 2015 | 100 | Plus |
CG9775-RC | 1749 | CG9775-RC | 67..393 | 221..547 | 1635 | 100 | Plus |
CG9775-RA | 2108 | CG9775-RA | 649..768 | 808..927 | 600 | 100 | Plus |
CG9775-RC | 1749 | CG9775-RC | 394..513 | 808..927 | 600 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 464728..466046 | 1542..224 | 6595 | 100 | Minus |
chr3R | 27901430 | chr3R | 463720..464551 | 2372..1541 | 4160 | 100 | Minus |
chr3R | 27901430 | chr3R | 467039..467261 | 223..1 | 1115 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:51:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4639018..4640336 | 1542..224 | 6595 | 100 | Minus |
3R | 32079331 | 3R | 4638007..4638841 | 2375..1541 | 4175 | 100 | Minus |
3R | 32079331 | 3R | 4641329..4641551 | 223..1 | 1115 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 4379849..4381167 | 1542..224 | 6595 | 100 | Minus |
3R | 31820162 | 3R | 4378838..4379672 | 2375..1541 | 4175 | 100 | Minus |
3R | 31820162 | 3R | 4382160..4382382 | 223..1 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 01:55:17 has no hits.
GH14260.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:56:22 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 463720..464549 | 1543..2372 | 100 | <- | Minus |
chr3R | 464728..466046 | 224..1542 | 100 | <- | Minus |
chr3R | 467039..467261 | 1..223 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:42:07 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RC | 325..1170 | 997..1843 | 99 | == | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:25 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RD | 1..948 | 1004..1951 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:36 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RD | 1..948 | 1004..1951 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:01:00 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RC | 325..1170 | 997..1843 | 99 | == | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:51:00 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RD | 1..948 | 1004..1951 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:12:30 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RA | 1..547 | 1..547 | 100 | == | Plus |
CG9775-RA | 662..1507 | 997..1843 | 99 | == | Plus |
CG9775-RA | 1508..1902 | 1978..2372 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:25 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RD | 45..2416 | 1..2372 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:36 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RD | 29..2400 | 1..2372 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:01:00 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RC | 459..1304 | 997..1843 | 99 | == | Plus |
CG9775-RC | 1305..1699 | 1978..2372 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:51:00 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RD | 29..2400 | 1..2372 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:22 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4638010..4638839 | 1543..2372 | 100 | <- | Minus |
3R | 4639018..4640336 | 224..1542 | 100 | <- | Minus |
3R | 4641329..4641551 | 1..223 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:22 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4638010..4638839 | 1543..2372 | 100 | <- | Minus |
3R | 4639018..4640336 | 224..1542 | 100 | <- | Minus |
3R | 4641329..4641551 | 1..223 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:22 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4638010..4638839 | 1543..2372 | 100 | <- | Minus |
3R | 4639018..4640336 | 224..1542 | 100 | <- | Minus |
3R | 4641329..4641551 | 1..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:36 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 463732..464561 | 1543..2372 | 100 | <- | Minus |
arm_3R | 464740..466058 | 224..1542 | 100 | <- | Minus |
arm_3R | 467051..467273 | 1..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:49 Download gff for
GH14260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4378841..4379670 | 1543..2372 | 100 | <- | Minus |
3R | 4379849..4381167 | 224..1542 | 100 | <- | Minus |
3R | 4382160..4382382 | 1..223 | 100 | | Minus |
GH14260.hyp Sequence
Translation from 1003 to 1950
> GH14260.hyp
MRADLVASGNAARNRRSGSSMRNVPATNGGGGGLRQRLGQRRPSVGGAAE
RVERRQRQQQQAPRGRSRSQSRSRHPQIQRVDRARSQSRGRSIGRSQSRN
RDRSAQGRVPVKQRLSVKHRLGVRTGQRNNQAKIPPQRRAPSQIRGVAGG
RVEKRRSAQISQKKGVSASIAGRQGRPRRRSVARNAASSSGAVNNSASAR
RSRSRNRAAAVAAAAIAATVQGRANPRQRRGRSAGAAKGKIIRNGKADKN
AKVKATNGVKSGPQQQVRRGRSRSRKPTGKSETSGQETNRTGSGNRHLKL
KIDIFLSLLSTYTLD*
GH14260.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9775-PD | 315 | CG9775-PD | 1..315 | 1..315 | 1552 | 100 | Plus |
CG9775-PE | 421 | CG9775-PE | 111..392 | 1..282 | 1378 | 99.3 | Plus |
CG9775-PC | 421 | CG9775-PC | 111..392 | 1..282 | 1378 | 99.3 | Plus |
CG9775-PA | 421 | CG9775-PA | 111..392 | 1..282 | 1378 | 99.3 | Plus |
CG9915-PC | 820 | CG9915-PC | 123..433 | 10..296 | 192 | 27.7 | Plus |
GH14260.pep Sequence
Translation from 1003 to 1950
> GH14260.pep
MRADLVASGNAARNRRSGSSMRNVPATNGGGGGLRQRLGQRRPSVGGAAE
RVERRQRQQQQAPRGRSRSQSRSRHPQIQRVDRARSQSRGRSIGRSQSRN
RDRSAQGRVPVKQRLSVKHRLGVRTGQRNNQAKIPPQRRAPSQIRGVAGG
RVEKRRSAQISQKKGVSASIAGRQGRPRRRSVARNAASSSGAVNNSASAR
RSRSRNRAAAVAAAAIAATVQGRANPRQRRGRSAGAAKGKIIRNGKADKN
AKVKATNGVKSGPQQQVRRGRSRSRKPTGKSETSGQETNRTGSGNRHLKL
KIDIFLSLLSTYTLD*
GH14260.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF18351-PA | 426 | GF18351-PA | 113..344 | 1..237 | 424 | 65.4 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG11466-PA | 423 | GG11466-PA | 111..422 | 1..314 | 873 | 78.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9775-PD | 315 | CG9775-PD | 1..315 | 1..315 | 1552 | 100 | Plus |
CG9775-PE | 421 | CG9775-PE | 111..392 | 1..282 | 1378 | 99.3 | Plus |
CG9775-PC | 421 | CG9775-PC | 111..392 | 1..282 | 1378 | 99.3 | Plus |
CG9775-PA | 421 | CG9775-PA | 111..392 | 1..282 | 1378 | 99.3 | Plus |
CG9915-PC | 820 | CG9915-PC | 123..433 | 10..296 | 192 | 27.7 | Plus |
CG9915-PB | 820 | CG9915-PB | 123..433 | 10..296 | 192 | 27.7 | Plus |
CG9915-PC | 820 | CG9915-PC | 101..426 | 2..296 | 183 | 25.9 | Plus |
CG9915-PB | 820 | CG9915-PB | 101..426 | 2..296 | 183 | 25.9 | Plus |
CG9915-PC | 820 | CG9915-PC | 186..453 | 8..293 | 160 | 26.4 | Plus |
CG9915-PB | 820 | CG9915-PB | 186..453 | 8..293 | 160 | 26.4 | Plus |
CG9915-PC | 820 | CG9915-PC | 193..465 | 8..290 | 156 | 23.8 | Plus |
CG9915-PB | 820 | CG9915-PB | 193..465 | 8..290 | 156 | 23.8 | Plus |
SRm160-PA | 954 | CG11274-PA | 127..393 | 50..295 | 156 | 25 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL21736-PA | 473 | GL21736-PA | 118..389 | 1..250 | 222 | 54.5 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA22027-PA | 461 | GA22027-PA | 118..409 | 1..266 | 209 | 49.2 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM10692-PA | 424 | GM10692-PA | 114..423 | 1..314 | 974 | 86.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD19666-PA | 413 | GD19666-PA | 111..412 | 1..314 | 959 | 82.7 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK13464-PA | 425 | GK13464-PA | 115..306 | 1..194 | 238 | 51.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE11129-PA | 359 | GE11129-PA | 59..358 | 1..314 | 678 | 73.2 | Plus |
Dyak\GE25342-PA | 413 | GE25342-PA | 111..402 | 1..307 | 614 | 75.6 | Plus |