Clone GH14278 Report

Search the DGRC for GH14278

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:142
Well:78
Vector:pOT2
Associated Gene/TranscriptCG2493-RA
Protein status:GH14278.pep: gold
Preliminary Size:1865
Sequenced Size:1670

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2493 2001-01-01 Release 2 assignment
CG2493 2003-01-01 Sim4 clustering to Release 3
CG2493 2003-01-14 Blastp of sequenced clone
CG2493 2008-04-29 Release 5.5 accounting
CG2493 2008-08-15 Release 5.9 accounting
CG2493 2008-12-18 5.12 accounting

Clone Sequence Records

GH14278.complete Sequence

1670 bp (1670 high quality bases) assembled on 2003-01-14

GenBank Submission: AY075335

> GH14278.complete
CCGGCTTGCAGATAACGAACTGAAAATTGTGCAAACCACAGAGGTCATAT
GATTCTTCGCGATATGGGAGAAGCCACAGTGAGAGCTGCACTGTTAGCGG
TTTTGGGAATCCTGCTGATCGCGGGCTGTGATTGCAGCCAGCGGTTCAAG
TACGAGATCAAGGAGTTCCAGGTGCCGCTGGACCATTTCAGCTTCCTGAT
CAACGCCACCTTCAACATCCGGTACTTGTACAACGACTCGTTCGTGGACA
AGAGCAATGCCCGCACCCCGATTTTCTTCTACACGGGCAACGAGGGGGAC
ATCGAACTCTTCGCCCAGAATACCGGATTCCTGTGGGAGCAGGCGGAACG
ACAGCGGGCTCTGGTGATCTTTGCGGAGCATCGTTACTATGGAAAGTCAT
TGCCCTTCGGTAGCTCCACGTTCAACACCAGCCTGCCGGAGCACTTGGCT
TACTTCACAGTGGAGCAGACGCTCGAGGACTACGCCATGCTGATCACGTT
CCTGCGGAACGATCGCCAGATGCCCGTGGTGGCCTTCGGGGGCTCCTATG
GCGGAATGCTGGCCGCCTGGTTCCGGATGAAGTATCCGCATTTGGTCAAC
GGAGCCCTGGCAGCCTCGGCGCCCGTTCTGCAGTTCCCCGGGATAACCGA
TTGCGACATCTTCTACAGGATTGTGACATCGGTGTTCCAGAATGCCTACA
ACGAAAACTGCACCTTGAATATTGCCAAGTCGTGGAAACTCTTCGAGACT
CTGGGCGCCAGCGAGGCCGGCAAGAAGCAGATATCGGATGCATTCCACCT
ATGCAATGCCCTGAAGAACGACGACGATCTGAAGAAGTTCCTGGACTACG
TGGAGGAGGTGTACAGCAATCTCGCCATGGTCAATTACCCGTACAACAGC
AGTTTCCTGGCCCCATTACCTGCCTATCCCGTGAGGCAGGTGTGCTACTA
CCTGAAGGAGCTGCATTCCACCGACGCCGATTTGCTGCACGCCATGTCCA
GCGCTTTGGCTGTCTACACCAACTACACACAGTCCGCCAAGTGCCTCGAT
ATATCCGTCAACTCCAACGCCGATGACTCCGGTTGGAATATCCAGAGCTG
CAACCAGATGGTGATGCCCATCTGCTCCAATGGCTCCGAAACCATGTTCC
GCACGTCCAGCTGGAACTTCAAGGATTACGCGGAAAAGTGCTACAAGAAC
TACCGTCTCACCCCCAAGCCATACGACATCATTCTGCGCTATGGCGGCAG
AAACCTGGAGGCTGCGACCAACATCATCTTCAGCAACGGTCTTCTGGATC
CCTGGAGCGGTGGCGGTGTGCTTCAGGCTCCCAACGACAAGGTCTTCGTC
ATCATCCTGCCCGAGGGAGCCCATCACTTGGACTTGCGCCACAGCGATCC
GGCCGATCCACCTTCTGTGCGCGATGCCCGCGATAAGGAAGCAGCCATCA
TAGCACGATGGATCCAAGATTTCTGAAGCGAGATTACTTTTACCCATACT
GAATCGCTCCACTATGGGGATTCATATTATATAACAGCCGAGCAAGGCCA
GATTAATCAAATATTTGGTATTCTTAAACCAAGGAACAAATTATGAAACA
CTCAGTTTAAGATCACAAAAATTATAAGCCATACTAAAGTTTTTTGAATT
GAAAAAAAAAAAAAAAAAAA

GH14278.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2493-RA 1865 CG2493-RA 32..1684 1..1653 8265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20460203..20461853 1651..1 8240 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:51:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20461766..20463418 1653..1 8265 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20461766..20463418 1653..1 8265 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:35:40 has no hits.

GH14278.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:36:44 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20460203..20461853 1..1651 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:42:09 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 1..1428 49..1476 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:52 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 1..1428 49..1476 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:01:20 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 1..1428 49..1476 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:48:42 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 1..1428 49..1476 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:14:57 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 1..1428 49..1476 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:14:14 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 32..1682 1..1651 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:52 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 32..1682 1..1651 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:20 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 27..1677 1..1651 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:42 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 32..1682 1..1651 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:57 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 27..1677 1..1651 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:36:44 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20461768..20463418 1..1651 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:36:44 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20461768..20463418 1..1651 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:36:44 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20461768..20463418 1..1651 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:20 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20461768..20463418 1..1651 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:20:06 Download gff for GH14278.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20461768..20463418 1..1651 100   Minus

GH14278.hyp Sequence

Translation from 48 to 1475

> GH14278.hyp
MILRDMGEATVRAALLAVLGILLIAGCDCSQRFKYEIKEFQVPLDHFSFL
INATFNIRYLYNDSFVDKSNARTPIFFYTGNEGDIELFAQNTGFLWEQAE
RQRALVIFAEHRYYGKSLPFGSSTFNTSLPEHLAYFTVEQTLEDYAMLIT
FLRNDRQMPVVAFGGSYGGMLAAWFRMKYPHLVNGALAASAPVLQFPGIT
DCDIFYRIVTSVFQNAYNENCTLNIAKSWKLFETLGASEAGKKQISDAFH
LCNALKNDDDLKKFLDYVEEVYSNLAMVNYPYNSSFLAPLPAYPVRQVCY
YLKELHSTDADLLHAMSSALAVYTNYTQSAKCLDISVNSNADDSGWNIQS
CNQMVMPICSNGSETMFRTSSWNFKDYAEKCYKNYRLTPKPYDIILRYGG
RNLEAATNIIFSNGLLDPWSGGGVLQAPNDKVFVIILPEGAHHLDLRHSD
PADPPSVRDARDKEAAIIARWIQDF*

GH14278.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2493-PB 475 CG2493-PB 1..475 1..475 2519 100 Plus
CG2493-PA 475 CG2493-PA 1..475 1..475 2519 100 Plus
CG9953-PA 508 CG9953-PA 59..503 40..475 328 25.7 Plus
CG18493-PA 480 CG18493-PA 49..479 30..472 318 24.9 Plus
CG3734-PB 473 CG3734-PB 54..473 44..473 311 23.6 Plus

GH14278.pep Sequence

Translation from 48 to 1475

> GH14278.pep
MILRDMGEATVRAALLAVLGILLIAGCDCSQRFKYEIKEFQVPLDHFSFL
INATFNIRYLYNDSFVDKSNARTPIFFYTGNEGDIELFAQNTGFLWEQAE
RQRALVIFAEHRYYGKSLPFGSSTFNTSLPEHLAYFTVEQTLEDYAMLIT
FLRNDRQMPVVAFGGSYGGMLAAWFRMKYPHLVNGALAASAPVLQFPGIT
DCDIFYRIVTSVFQNAYNENCTLNIAKSWKLFETLGASEAGKKQISDAFH
LCNALKNDDDLKKFLDYVEEVYSNLAMVNYPYNSSFLAPLPAYPVRQVCY
YLKELHSTDADLLHAMSSALAVYTNYTQSAKCLDISVNSNADDSGWNIQS
CNQMVMPICSNGSETMFRTSSWNFKDYAEKCYKNYRLTPKPYDIILRYGG
RNLEAATNIIFSNGLLDPWSGGGVLQAPNDKVFVIILPEGAHHLDLRHSD
PADPPSVRDARDKEAAIIARWIQDF*

GH14278.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14561-PA 471 GF14561-PA 1..471 6..475 2134 81.5 Plus
Dana\GF23556-PA 508 GF23556-PA 59..503 40..475 326 26.7 Plus
Dana\GF16547-PA 480 GF16547-PA 49..479 30..472 324 25.8 Plus
Dana\GF16549-PA 489 GF16549-PA 64..488 44..474 312 25.8 Plus
Dana\GF16546-PA 473 GF16546-PA 54..473 44..473 310 23.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21569-PA 470 GG21569-PA 1..470 6..475 2404 93.2 Plus
Dere\GG23250-PA 480 GG23250-PA 63..479 44..472 331 26.2 Plus
Dere\GG14395-PA 508 GG14395-PA 59..503 40..475 321 25.3 Plus
Dere\GG23239-PA 473 GG23239-PA 54..473 44..473 303 24.1 Plus
Dere\GG23262-PA 485 GG23262-PA 47..485 30..474 282 25.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13951-PA 472 GH13951-PA 22..468 32..475 1803 71.9 Plus
Dgri\GH11372-PA 472 GH11372-PA 22..468 32..475 1799 71.7 Plus
Dgri\GH15372-PA 505 GH15372-PA 54..498 40..475 357 27.6 Plus
Dgri\CpepX-PA 478 GH22291-PA 60..477 43..472 315 26.7 Plus
Dgri\GH22292-PA 480 GH22292-PA 46..479 30..472 288 25.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2493-PB 475 CG2493-PB 1..475 1..475 2519 100 Plus
CG2493-PA 475 CG2493-PA 1..475 1..475 2519 100 Plus
CG9953-PA 508 CG9953-PA 59..503 40..475 328 25.7 Plus
CG18493-PA 480 CG18493-PA 49..479 30..472 318 24.9 Plus
CG3734-PB 473 CG3734-PB 54..473 44..473 311 23.6 Plus
CG3734-PA 473 CG3734-PA 54..473 44..473 311 23.6 Plus
CG3739-PB 485 CG3739-PB 49..485 32..474 294 25.4 Plus
CG11626-PB 379 CG11626-PB 2..344 99..435 231 25.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18077-PA 469 GI18077-PA 2..469 15..475 1854 71.4 Plus
Dmoj\GI12975-PA 507 GI12975-PA 56..500 40..475 358 25.9 Plus
Dmoj\GI23100-PA 882 GI23100-PA 451..881 30..472 317 25.5 Plus
Dmoj\GI23098-PA 386 GI23098-PA 1..386 57..473 294 24.9 Plus
Dmoj\GI24473-PA 483 GI24473-PA 51..482 30..472 292 25.3 Plus
Dmoj\GI23100-PA 882 GI23100-PA 48..460 31..471 286 26.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19317-PA 474 GL19317-PA 31..474 32..475 2119 85.4 Plus
Dper\GL15050-PA 508 GL15050-PA 61..505 40..475 340 26 Plus
Dper\GL12647-PA 479 GL12647-PA 49..478 31..472 340 25.9 Plus
Dper\GL12648-PA 485 GL12648-PA 50..483 31..472 322 27.4 Plus
Dper\GL12646-PA 473 GL12646-PA 54..473 44..473 291 24.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15377-PA 474 GA15377-PA 31..474 32..475 2126 85.6 Plus
Dpse\GA22150-PA 508 GA22150-PA 61..505 40..475 340 26 Plus
Dpse\GA14959-PA 479 GA14959-PA 49..478 31..472 340 25.9 Plus
Dpse\GA17653-PA 485 GA17653-PA 50..483 31..472 317 26.8 Plus
Dpse\GA17650-PA 473 GA17650-PA 54..473 44..473 292 24.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23324-PA 475 GM23324-PA 1..475 1..475 2542 98.9 Plus
Dsec\GM14810-PA 508 GM14810-PA 59..503 40..475 320 25.5 Plus
Dsec\GM26836-PA 473 GM26836-PA 54..473 44..473 304 24 Plus
Dsec\GM26842-PA 487 GM26842-PA 36..487 18..472 272 24 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21700-PA 475 GD21700-PA 1..475 1..475 2548 99.2 Plus
Dsim\GD13982-PA 508 GD13982-PA 59..503 40..475 321 25.5 Plus
Dsim\GD19291-PA 487 GD19291-PA 36..487 18..472 269 24 Plus
Dsim\GD19284-PA 515 GD19284-PA 54..283 44..279 241 27.3 Plus
Dsim\GD19287-PA 530 GD19287-PA 2..188 99..288 211 29.6 Plus
Dsim\GD19287-PA 530 GD19287-PA 185..530 131..474 194 23.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16686-PA 469 GJ16686-PA 8..469 17..475 1864 71.6 Plus
Dvir\GJ13120-PA 513 GJ13120-PA 62..506 40..475 367 26.5 Plus
Dvir\GJ22720-PA 487 GJ22720-PA 53..486 30..472 324 26.7 Plus
Dvir\GJ24539-PA 489 GJ24539-PA 61..450 44..423 293 25.9 Plus
Dvir\GJ22718-PA 476 GJ22718-PA 57..476 44..473 282 23.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24560-PA 480 GK24560-PA 29..474 30..475 1934 77.4 Plus
Dwil\GK16991-PA 512 GK16991-PA 63..507 40..475 337 27.1 Plus
Dwil\GK13808-PA 445 GK13808-PA 15..444 31..472 323 26.4 Plus
Dwil\GK13807-PA 481 GK13807-PA 59..481 44..473 300 24.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12590-PA 470 GE12590-PA 1..470 6..475 2434 94.9 Plus
Dyak\GE25600-PA 480 GE25600-PA 49..479 30..472 324 25 Plus
Dyak\GE21585-PA 508 GE21585-PA 59..503 40..475 320 25 Plus
Dyak\GE25599-PA 473 GE25599-PA 54..473 44..473 303 23.4 Plus
Dyak\GE25604-PA 485 GE25604-PA 49..485 32..474 297 26 Plus