Clone GH14368 Report

Search the DGRC for GH14368

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:143
Well:68
Vector:pOT2
Associated Gene/Transcriptecd-RA
Protein status:GH14368.pep: gold
Preliminary Size:2130
Sequenced Size:2148

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5714 2001-01-01 Release 2 assignment
CG5714 2001-07-04 Blastp of sequenced clone
CG5714 2003-01-01 Sim4 clustering to Release 3
ecd 2008-04-29 Release 5.5 accounting
ecd 2008-08-15 Release 5.9 accounting
ecd 2008-12-18 5.12 accounting

Clone Sequence Records

GH14368.complete Sequence

2148 bp (2148 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051483

> GH14368.complete
GACAAAGGATGAGCAAGATTCCAGGCAGCAATCTGGAGTTCGTCCGCGAG
GAGGACTTCGTGGAGTACTACATCTTTCCCAAGATCCCCGACAACGTACA
GGATGAGGGCGCGCTGCGCAAACTGATGCTTCAGATCCGCAACGAGATCT
CGGCCATTGTAAGGGAAAAGTCCTTAGAGCGCAGCTATCTGTGGCACAAG
GACGAGTTTCAGCTTCAGGTGAGGCTGGGCGGCGCCGAGGAGCGCCTGCT
GAACGAGGAGACAAACCCGGAGGAGGAGGCGGAACTGGGCGACCTCCCAC
CGCACTTCCACGGCGTAACCCACTATGGCGACAACATCAGCGACGAGTGG
TTCGTTGTCTATCTGCTCACGGAGATCACACGTGCACGCGGCGACTGCAT
TGCACGGGTGAGCGATTCGGATGGCGAGTTCCTGCTCATCGAGGCGGCGG
ACGCCCTGCCCGACTGGGCGTCTCCGGAAACGTGCGAGCAGCGCGTTTAT
CTGGTCGGTGGTCACCTGCAGCTTCTCCAGAACTCCGCCGCCAGCAGCCA
GGACAAGCCACTGACCATGGCCATGGCTGTGCAACGTATACGAATGAATC
CCACCCTGTACCGCTGCTCGCAGGAGATACAGTCGTGCATTGACGCGCGG
CTTAAGGAGTACCAGATCGCTCAGCCGCACTTCTCCATTCATCGCCAGGT
GCTGGAGCTCCCGCATAGCGCTGCACAGCTTCTGAAACAGAAGCCAAGGC
TGCTCTCCTCGGCGGTTAGGGCTTTCTGCGAGCGGGACTCGCTGGACATC
AAGGCACTTCGCACCATGCGATATTTCCCACCGGAGGCCACACGCGTGCG
CACCAACGTGCGTTTCACCCGCTGTCTGTACGCCATGTTGTCGCACCAGC
AGTATCTGCCCGAGAAGAGACTCGGCTGGCATCTCACGGATCCTGTATCC
GAGCCGGAACGATATAAGGAACAACTATTGGGCTTGAAGCTGGCCAGTGG
ACTGGAGATCCTGGCCACTCAAGCCAAGCGGGTTGAGGGCCAACAGCTGG
AGGACCTTCCTGCCTGGCGATCGTATCTGCGGAGCTTGCTGAGCAAGGGC
TACTTCCGGGACAACATCGAGGGCAGTGCCGAGTACCAGGAGCTGCTGAA
CAAGGCCAAGGTGTACTTTCGTGGCAACCAGGAGCGTTTCCGCACAGCCT
CCAGAGCGGGTGCCGAGATCCTCGACCTGTTGCTCCATCCAGCGGAGGCT
GCTTCCGAGGAGCTGCGCGATGAGGAGAACAACCTGCAGCCCAGCGACTC
GGATGAGTGGTTGAATATCAGCGCTGAGGATCTAGACTCCATGCTGCAGG
ATCGCTACGGACCCAAGAAGCTCTACAAGCCGAACGGACAAATGAATGCC
GAGGAGTTCACCAAGCAGCTGGCGGAGTTCTTAGATCGGCAGTCCAACTA
CGAGGGCATTGAGCACCGAGGGCTCGAGGAGCCAGAACTGGACTCAGACG
ATGACGAGCCGCCGCCGCAGGCAAACGGTTCCACAGGACTGACAGCAAAG
GTCAAGAAGAATCCCTCCATGCGCAAGGCGTGCCAGCGCAATTCCGTCAT
CCAGCCGGAGGAACCGGACAGCACCCATGTGCGGAATTTCCTGGATTTCG
TAATACCCGAGGACAACTGGGACTCCACCTCGGAGATGAGCGACTACGCG
GACGAGGACGACATGGAGAGTAATCTAAATGCACTTTCTGGAGGCGGCAG
TGTGTTCCCACTCGATCGACAGATTCAATCGTATATGGAGCAGATGGACC
GCGAGTTGGCTCAGACCAGCGTGGGCAAGTCCTTCCACGGCAAGAAGAAG
ACAGCTCCACAGGCGGACGAGGACGATTTCGATGACATTGAGGACTTTGA
GCCCATCAATATAAACGTAAACACGCTGCGCAACATGATGGATAGCTACC
AATCGCAGGTTGGCGGCGCAGGTCCTGTATCCAATCTGTTTAGCGCCATG
GGCGTGGGCATGTCGGCTGTCGAGGACAAGGAACAAAAGGATATATCTGA
GTCGGCCGTTTAAGCGGGATTACAGGAATTAGTATAGTCTTAAGTCCATT
AAATAAACGTCAATGTGAATATTTCAATGTAAAAAAAAAAAAAAAAAA

GH14368.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
ecd-RA 2223 ecd-RA 94..2223 1..2130 10650 100 Plus
CG13807-RA 825 CG13807-RA 738..825 2132..2045 440 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2262983..2264825 2130..288 9065 99.5 Minus
chr3L 24539361 chr3L 2264897..2265185 289..1 1415 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:51:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2263579..2265423 2132..288 9225 100 Minus
3L 28110227 3L 2265495..2265783 289..1 1445 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2263579..2265423 2132..288 9225 100 Minus
3L 28103327 3L 2265495..2265783 289..1 1445 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:40:20 has no hits.

GH14368.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:41:21 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2262983..2264824 289..2130 99 <- Minus
chr3L 2264898..2265185 1..288 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:42:24 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
ecd-RA 1..2055 9..2063 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:53 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
ecd-RA 1..2055 9..2063 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:36:09 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
ecd-RA 1..2055 9..2063 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:05 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
ecd-RA 1..2055 9..2063 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:12:33 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
ecd-RA 1..2055 9..2063 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:03 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
ecd-RA 29..2158 1..2130 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:52 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
ecd-RA 29..2158 1..2130 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:36:09 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
ecd-RA 75..2204 1..2130 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:05 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
ecd-RA 29..2158 1..2130 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:12:33 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
ecd-RA 75..2204 1..2130 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:21 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2265496..2265783 1..288 100   Minus
3L 2263581..2265422 289..2130 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:21 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2265496..2265783 1..288 100   Minus
3L 2263581..2265422 289..2130 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:21 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2265496..2265783 1..288 100   Minus
3L 2263581..2265422 289..2130 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:36:09 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2265496..2265783 1..288 100   Minus
arm_3L 2263581..2265422 289..2130 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:37:55 Download gff for GH14368.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2263581..2265422 289..2130 100 <- Minus
3L 2265496..2265783 1..288 100   Minus

GH14368.hyp Sequence

Translation from 2 to 2062

> GH14368.hyp
QRMSKIPGSNLEFVREEDFVEYYIFPKIPDNVQDEGALRKLMLQIRNEIS
AIVREKSLERSYLWHKDEFQLQVRLGGAEERLLNEETNPEEEAELGDLPP
HFHGVTHYGDNISDEWFVVYLLTEITRARGDCIARVSDSDGEFLLIEAAD
ALPDWASPETCEQRVYLVGGHLQLLQNSAASSQDKPLTMAMAVQRIRMNP
TLYRCSQEIQSCIDARLKEYQIAQPHFSIHRQVLELPHSAAQLLKQKPRL
LSSAVRAFCERDSLDIKALRTMRYFPPEATRVRTNVRFTRCLYAMLSHQQ
YLPEKRLGWHLTDPVSEPERYKEQLLGLKLASGLEILATQAKRVEGQQLE
DLPAWRSYLRSLLSKGYFRDNIEGSAEYQELLNKAKVYFRGNQERFRTAS
RAGAEILDLLLHPAEAASEELRDEENNLQPSDSDEWLNISAEDLDSMLQD
RYGPKKLYKPNGQMNAEEFTKQLAEFLDRQSNYEGIEHRGLEEPELDSDD
DEPPPQANGSTGLTAKVKKNPSMRKACQRNSVIQPEEPDSTHVRNFLDFV
IPEDNWDSTSEMSDYADEDDMESNLNALSGGGSVFPLDRQIQSYMEQMDR
ELAQTSVGKSFHGKKKTAPQADEDDFDDIEDFEPININVNTLRNMMDSYQ
SQVGGAGPVSNLFSAMGVGMSAVEDKEQKDISESAV*

GH14368.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
ecd-PA 684 CG5714-PA 1..684 3..686 3549 100 Plus

GH14368.pep Sequence

Translation from 8 to 2062

> GH14368.pep
MSKIPGSNLEFVREEDFVEYYIFPKIPDNVQDEGALRKLMLQIRNEISAI
VREKSLERSYLWHKDEFQLQVRLGGAEERLLNEETNPEEEAELGDLPPHF
HGVTHYGDNISDEWFVVYLLTEITRARGDCIARVSDSDGEFLLIEAADAL
PDWASPETCEQRVYLVGGHLQLLQNSAASSQDKPLTMAMAVQRIRMNPTL
YRCSQEIQSCIDARLKEYQIAQPHFSIHRQVLELPHSAAQLLKQKPRLLS
SAVRAFCERDSLDIKALRTMRYFPPEATRVRTNVRFTRCLYAMLSHQQYL
PEKRLGWHLTDPVSEPERYKEQLLGLKLASGLEILATQAKRVEGQQLEDL
PAWRSYLRSLLSKGYFRDNIEGSAEYQELLNKAKVYFRGNQERFRTASRA
GAEILDLLLHPAEAASEELRDEENNLQPSDSDEWLNISAEDLDSMLQDRY
GPKKLYKPNGQMNAEEFTKQLAEFLDRQSNYEGIEHRGLEEPELDSDDDE
PPPQANGSTGLTAKVKKNPSMRKACQRNSVIQPEEPDSTHVRNFLDFVIP
EDNWDSTSEMSDYADEDDMESNLNALSGGGSVFPLDRQIQSYMEQMDREL
AQTSVGKSFHGKKKTAPQADEDDFDDIEDFEPININVNTLRNMMDSYQSQ
VGGAGPVSNLFSAMGVGMSAVEDKEQKDISESAV*

GH14368.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24872-PA 685 GF24872-PA 1..685 1..684 2844 80.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14523-PA 685 GG14523-PA 1..685 1..684 3421 95.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16480-PA 709 GH16480-PA 1..709 1..684 2374 66.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
ecd-PA 684 CG5714-PA 1..684 1..684 3549 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12151-PA 699 GI12151-PA 1..699 1..684 2472 69.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24621-PA 611 GL24621-PA 15..415 5..407 1484 66.5 Plus
Dper\GL24621-PA 611 GL24621-PA 372..611 453..684 709 66.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19078-PA 699 GA19078-PA 15..699 5..684 2538 69.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14128-PA 684 GM14128-PA 1..684 1..684 3587 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13400-PA 240 GD13400-PA 1..240 445..684 1257 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13431-PA 718 GJ13431-PA 1..718 1..684 2473 69.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12519-PA 710 GK12519-PA 4..710 2..684 2383 66.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21715-PA 683 GE21715-PA 1..683 1..684 3430 95.6 Plus