Clone GH14470 Report

Search the DGRC for GH14470

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:144
Well:70
Vector:pOT2
Associated Gene/TranscriptCG4810-RA
Protein status:GH14470.pep: gold
Preliminary Size:2541
Sequenced Size:2251

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4810 2001-01-01 Release 2 assignment
CG4810 2002-06-07 Blastp of sequenced clone
CG4810 2003-01-01 Sim4 clustering to Release 3
CG4810 2008-04-29 Release 5.5 accounting
CG4810 2008-08-15 Release 5.9 accounting
CG4810 2008-12-18 5.12 accounting

Clone Sequence Records

GH14470.complete Sequence

2251 bp (2251 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119516

> GH14470.complete
CCGGATCACATAAATGTAAATACTTGCTCTTGGTTATTTAAACATCTTTC
GGCGTGATTATGTCCAACTACGCACCCTTTATCAAGCCCTATGTGGAGTA
CAACGAGCACGGCTGGGGTCCTTGCGAGGTACCCGAATTGGATGTGCCCT
ACCAGCCGTTCTGCAAAAGTGATCGCCTGGGCAAGATCTGCGACTGGACT
GCGATGGTGCCCGAGAAGAAGTTCCCCAGTAAATACGCCTCGACCTTTGG
CAACAACAGTCAGTACGCATACTTCTACGAGGACGATGACTCCACCTTCC
ATTTGGTGGACACCACTGGATCGAAGGCCACCAAGCCCTATCAGCGGGGA
CGCTATAGACCCAATATGCGCAACAATGTGAGGAGCAGGGGTCGCACGGG
GCGTGGCACTCCGAATATAGCAAGTCTCGGGGGATCCACGGCTGGAGGCG
CAACTGCCAGTACCACCAAGTACGGAAAGGGTCGCAATACACGCAACACG
CAGAATATGGGTCGCAGATTCGGTCGCAATGCTCCCACCAGAATCCGCGA
GAGCTCAGTGATGGTGCAATCGGATTGGGTTTCGATCGAGGAGATTGATT
TTCCACGCCTTCTCAAGCTGGCACTTCCCAATATTAAAGATGGTAAGGAC
ATTGCCACCTGCGGATGGCTGGAATTTTATGATAAGTTATACGATCGAGT
CAACTTACGCAATGAAAAACCATTGCAAAAGATGGATCGTGTTGTGCACA
CCGTGACGACCACGGATGATCCGGTTATTCGTCGTCTTTCGAGGACCATG
GGCAATGTCTTTGCCACCGACGAAATCTTGTCCACCATAATGTGCTGCAC
ACGCTCCAATTACTCTTGGGATGTGGTAGTCGAGAAATTGGGCACTAAGG
TGTTCTTAGATAAGAGATATAATGATCAATTTGATTTGCTGACTGTCAAC
GAGACTTCAGTAGAACCTCCGATGGATGAGGAGGGTTCCATCAATTCGGC
ACATAGCTTGGCAATGGAGGCCACTCTAATTAATCACAACTTTAGCCAGC
AGGTTCTTCGCATTGGCGACCAAGAGCCACGTTTCATGTTTGAGGAGCCC
AATCCGTTCGAGGAGCCAGGCGTGGATCTTGCCTCCATTGGCTATCGCTA
CCGTCAGTGGGATCTGGGCAACGATGTGGTGCTGATTGCTCGCTGCAAGC
ACAATGGGGTTATCCAAGGACCCAATGGGGACGTGCAGTTCCTCTCGATC
AAGGCGCTGAATGAATGGGACTCCAAGGTGACCAACAGTGTGGAGTGGCG
CCAGAAGTTGGACACCCAGCGCGGTGCAGTCTTGGCCTCCGAGTTGCGCA
ACAATGCTTGTAAGCTAGCTCGATGGACCGTTGAGGCTGTGCTGGCTGGT
TCCGATCAACTGAAGTTAGGCTATGTGTCCAGGATGAATCCGCGTGATCA
CCTGCGTCACGTGATCCTTGGCACACAGCAATTCAAGCCGCAGGAGTTCG
CCACCCAAATCAACCTGAACATGGACAATGCCTGGGGAGTATTGCGTTGC
CTAATTGACCTTGTGATGAGGCAACCGGATGGAAAGTATCTGATCATGAA
GGATCCCAACAAGCCGATGATCCGTCTGTATGACGTTCCGGAAAACGCCT
TCGACTCCGACGGCGATGAGGAGGAGGAGTCCAGCGATCCCTTGAGTAAC
TCCAACGATAACTAACGCCCTCACGAATTTATTCAACTAATAGTTCTCCG
AACAAGGGGATCCGTCGACGGACGAGACAAGCCGACACATGCTGACAGAT
GCGCAGTGAACACAAATGCAATTTAAATTGAGTTTTTGACCAAACACAAC
ATATGAACGGAGCCATCACTTGACATGTCAGTGAACAACGGACCGGGTGA
CCGGGTGCAGTCACAGTTATTTTGAGGATAACATGGCCACATCAATCACT
GCGGTTCCAAGAAATACAAAATGAAACCCGGCTAAATAAATATGCATTGT
GCAGAACATCCCCCGCCATTACCGACTGACAATCACAATAATTGCGGGGG
AGTGGAACTGGGGCTGAAATGGGTGAAGGGCTGTTTGGGTGACAAACCTC
AGGATCAATAAATCACCGAACACGGCATCAATCAATGCAAATTCTGATGC
TGCTGTGGTGCTTGGCGTGCGACAATTTAAGCAAAATGTTTTCGTATTCA
ACAGCATTTAATTAAATTCATATATGTGCTCGAAAAAAAAAAAAAAAAAA
A

GH14470.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-RA 2361 CG4810-RA 52..2285 1..2234 11170 100 Plus
CG4810.a 2171 CG4810.a 1..1696 1..1696 8480 100 Plus
CG4810.a 2171 CG4810.a 1696..2171 1757..2232 2380 100 Plus
eIF-3p66.a 2077 eIF-3p66.a 1392..1817 1235..1660 750 78.4 Plus
eIF-3p66.a 2077 eIF-3p66.a 875..1056 724..905 250 75.8 Plus
eIF-3p66.a 2077 eIF-3p66.a 254..313 140..199 210 90 Plus
eIF-3p66.a 2077 eIF-3p66.a 1160..1209 1009..1058 145 86 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8018088..8019269 2232..1051 5895 99.9 Minus
chr3R 27901430 chr3R 8019343..8020396 1054..1 5240 99.8 Minus
chr3R 27901430 chr3R 19505048..19505473 1235..1660 750 78.4 Plus
chr3R 27901430 chr3R 19504235..19504549 573..887 255 72.1 Plus
chr3R 27901430 chr3R 19503704..19503763 140..199 225 91.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:52:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12192701..12193884 2234..1051 5920 100 Minus
3R 32079331 3R 12193958..12195011 1054..1 5270 100 Minus
3R 32079331 3R 23681642..23682067 1235..1660 750 78.4 Plus
3R 32079331 3R 23680829..23681143 573..887 255 72.1 Plus
3R 32079331 3R 23680298..23680357 140..199 210 90 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11933532..11934715 2234..1051 5920 100 Minus
3R 31820162 3R 11934789..11935842 1054..1 5270 100 Minus
3R 31820162 3R 23422473..23422898 1235..1660 750 78.4 Plus
3R 31820162 3R 23421811..23421974 724..887 235 76.2 Plus
3R 31820162 3R 23421129..23421188 140..199 210 90 Plus
3R 31820162 3R 23422165..23422214 1009..1058 145 86 Plus
Blast to na_te.dros performed on 2019-03-16 02:33:56 has no hits.

GH14470.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:34:40 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8018088..8019267 1053..2232 99 <- Minus
chr3R 8019345..8020396 1..1052 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:42:44 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..1656 60..1715 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:28:39 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..1656 60..1715 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:21:21 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..1656 60..1715 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:18:58 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..1656 60..1715 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:15:42 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..1656 60..1715 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:57:35 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..2232 1..2232 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:28:39 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..2232 1..2232 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:21:21 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..2232 1..2232 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:18:59 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..2232 1..2232 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:15:42 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..2232 1..2232 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:34:40 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12192703..12193882 1053..2232 100 <- Minus
3R 12193960..12195011 1..1052 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:34:40 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12192703..12193882 1053..2232 100 <- Minus
3R 12193960..12195011 1..1052 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:34:40 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12192703..12193882 1053..2232 100 <- Minus
3R 12193960..12195011 1..1052 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:21:21 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8018425..8019604 1053..2232 100 <- Minus
arm_3R 8019682..8020733 1..1052 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:52:29 Download gff for GH14470.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11933534..11934713 1053..2232 100 <- Minus
3R 11934791..11935842 1..1052 100   Minus

GH14470.pep Sequence

Translation from 59 to 1714

> GH14470.pep
MSNYAPFIKPYVEYNEHGWGPCEVPELDVPYQPFCKSDRLGKICDWTAMV
PEKKFPSKYASTFGNNSQYAYFYEDDDSTFHLVDTTGSKATKPYQRGRYR
PNMRNNVRSRGRTGRGTPNIASLGGSTAGGATASTTKYGKGRNTRNTQNM
GRRFGRNAPTRIRESSVMVQSDWVSIEEIDFPRLLKLALPNIKDGKDIAT
CGWLEFYDKLYDRVNLRNEKPLQKMDRVVHTVTTTDDPVIRRLSRTMGNV
FATDEILSTIMCCTRSNYSWDVVVEKLGTKVFLDKRYNDQFDLLTVNETS
VEPPMDEEGSINSAHSLAMEATLINHNFSQQVLRIGDQEPRFMFEEPNPF
EEPGVDLASIGYRYRQWDLGNDVVLIARCKHNGVIQGPNGDVQFLSIKAL
NEWDSKVTNSVEWRQKLDTQRGAVLASELRNNACKLARWTVEAVLAGSDQ
LKLGYVSRMNPRDHLRHVILGTQQFKPQEFATQINLNMDNAWGVLRCLID
LVMRQPDGKYLIMKDPNKPMIRLYDVPENAFDSDGDEEEESSDPLSNSND
N*

GH14470.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17742-PA 549 GF17742-PA 1..549 1..551 2548 82.4 Plus
Dana\GF16250-PA 561 GF16250-PA 9..532 2..531 1970 67.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17155-PA 551 GG17155-PA 1..551 1..551 2685 89.8 Plus
Dere\GG11214-PA 560 GG11214-PA 9..534 2..531 1980 67 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15488-PA 557 GH15488-PA 1..555 1..551 2148 70.7 Plus
Dgri\GH17455-PA 563 GH17455-PA 9..534 2..531 1983 68 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
eIF3d2-PA 551 CG4810-PA 1..551 1..551 2945 100 Plus
eIF3d1-PB 560 CG10161-PB 9..546 2..543 1969 66.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22467-PA 554 GI22467-PA 1..544 1..543 2250 75.8 Plus
Dmoj\GI22779-PA 563 GI22779-PA 9..534 2..531 1984 68 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21571-PA 545 GL21571-PA 1..527 1..531 2211 76.3 Plus
Dper\GL13650-PA 541 GL13650-PA 9..512 2..531 1797 63.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18448-PA 545 GA18448-PA 1..527 1..531 2193 75.9 Plus
Dpse\GA26977-PA 563 GA26977-PA 9..534 2..531 1913 66.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26037-PA 550 GM26037-PA 1..550 1..551 2891 96.9 Plus
Dsec\GM26513-PA 560 GM26513-PA 9..534 2..531 1974 67 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20597-PA 551 GD20597-PA 1..551 1..551 2903 96.7 Plus
Dsim\GD21022-PA 560 GD21022-PA 9..534 2..531 1976 67 Plus
Dsim\GD20596-PA 106 GD20596-PA 1..104 1..104 565 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10066-PA 554 GJ10066-PA 1..544 1..543 2252 75.6 Plus
Dvir\GJ22782-PA 563 GJ22782-PA 9..534 2..531 1987 68.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11533-PA 550 GK11533-PA 4..528 3..531 2170 73.2 Plus
Dwil\GK13187-PA 561 GK13187-PA 9..532 2..531 1969 67.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24545-PA 551 GE24545-PA 1..551 1..551 2728 91.5 Plus
Dyak\GE10378-PA 560 GE10378-PA 9..534 2..531 1980 67 Plus

GH14470.hyp Sequence

Translation from 59 to 1714

> GH14470.hyp
MSNYAPFIKPYVEYNEHGWGPCEVPELDVPYQPFCKSDRLGKICDWTAMV
PEKKFPSKYASTFGNNSQYAYFYEDDDSTFHLVDTTGSKATKPYQRGRYR
PNMRNNVRSRGRTGRGTPNIASLGGSTAGGATASTTKYGKGRNTRNTQNM
GRRFGRNAPTRIRESSVMVQSDWVSIEEIDFPRLLKLALPNIKDGKDIAT
CGWLEFYDKLYDRVNLRNEKPLQKMDRVVHTVTTTDDPVIRRLSRTMGNV
FATDEILSTIMCCTRSNYSWDVVVEKLGTKVFLDKRYNDQFDLLTVNETS
VEPPMDEEGSINSAHSLAMEATLINHNFSQQVLRIGDQEPRFMFEEPNPF
EEPGVDLASIGYRYRQWDLGNDVVLIARCKHNGVIQGPNGDVQFLSIKAL
NEWDSKVTNSVEWRQKLDTQRGAVLASELRNNACKLARWTVEAVLAGSDQ
LKLGYVSRMNPRDHLRHVILGTQQFKPQEFATQINLNMDNAWGVLRCLID
LVMRQPDGKYLIMKDPNKPMIRLYDVPENAFDSDGDEEEESSDPLSNSND
N*

GH14470.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-PA 551 CG4810-PA 1..551 1..551 2945 100 Plus
eIF-3p66-PB 560 CG10161-PB 9..546 2..543 1969 66.4 Plus