BDGP Sequence Production Resources |
Search the DGRC for GH14561
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 145 |
Well: | 61 |
Vector: | pOT2 |
Associated Gene/Transcript | Vps24-RA |
Protein status: | GH14561.pep: gold |
Preliminary Size: | 752 |
Sequenced Size: | 1094 |
Gene | Date | Evidence |
---|---|---|
CG9779 | 2001-01-01 | Release 2 assignment |
CG9779 | 2001-09-19 | Blastp of sequenced clone |
CG9779 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9779 | 2008-04-29 | Release 5.5 accounting |
CG9779 | 2008-08-15 | Release 5.9 accounting |
CG9779 | 2008-12-18 | 5.12 accounting |
1094 bp (1094 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058381
> GH14561.complete AAATGACTCACTTGTTTGTTTAAACAAAAAAAGAATTTTAATAACAATTC CAGACAATTATCATAACAGTTAGTGCCATGGGCTTATTCGGCAGAACTCC CAGTAAAGATCCCAAAGAGCAGGTGCAGGAGTGGACGCATAAGATACGGA AAGAGGGCAACCAGCTGGATCGCCAGATCCGAAGTATCCAGCGCGAGGAA GAGAAAGTAAAACGCTCGCTGAAACAGGCAGCACAGAAAAATGACCGCGA CACCTGCGTCATTCTTGCCAAGGAGATTGTGAATGCGCGAAAGGCCATCA ACCGCATATATACGTCGAAGGCGCACCTCAACTCCATTCAGATGCAGATG AAAAATCAGCTATCCACCTTGCGTGTAGCTGGATCTCTGCAAAAGTCTAC AGAGGTCTTGCAAGCTATGCAGAGCCTGGTGCGCTATCCAGAGCTTGCAG GCATCATGCGCGACATGTCAAAGGAAATGATGAAGGCCGGCATTATTGAG GAGATGCTAGACGAGACCATGGACTCGCTGGAGGAGTCCGAGGAGCTGGA GGAGGAGGCAAGCAAGGAGGTGGACAAGGTTTTGTGGGAGATCACAGATG GCAAGCTCGGGGAAGCTCCCCTGCCTCCAGAGGCTACACCGGCGGACAAG GCGTCTGCGTCTGCTGCGCGCGTCGAGGCTGAGCAGGACGATGAGGAGGG TGAGGAACTGCAAGAGATGCAAAGCCGCCTGGCCTCGCTGCGATCTTAAA ACAACTGCTATGGGTATTTTATTTAGATTTGAAATTAAAGGCAAGTGATT TTGACTGGCAGACCTTATCAAAATCATAAACGGCAACCCCCACGCCGTCA TTTGATTGTAGAAACCAAAATAATCTCCAGAAACTTGAATTGAGTTTTTA TATTATAAGTGTACAGTACACCAGATCAAGAAGTGTTGAACTCTGCGCGT TTTACCGTTGAATCTACACGAGATAACTTAATTTATTGTAAAATCTACCT TTCATTAAAAATCGATATTTACTGTGGCATGTCCCATTTTACAATGGTAA TCTGCACGATTTACGATCAATCCCTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 135367..136078 | 1075..364 | 3560 | 100 | Minus |
chr3R | 27901430 | chr3R | 136134..136376 | 363..121 | 1215 | 100 | Minus |
chr3R | 27901430 | chr3R | 136505..136628 | 124..1 | 620 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 4050476..4051189 | 1077..364 | 3570 | 100 | Minus |
3R | 31820162 | 3R | 4051245..4051487 | 363..121 | 1215 | 100 | Minus |
3R | 31820162 | 3R | 4051616..4051739 | 124..1 | 620 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 650..698 | 20..68 | 110 | 69.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 136507..136628 | 1..122 | 100 | Minus | |
chr3R | 135367..136078 | 364..1075 | 100 | <- | Minus |
chr3R | 136134..136374 | 123..363 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9779-RA | 1..672 | 78..749 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vps24-RA | 1..672 | 78..749 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vps24-RA | 1..672 | 78..749 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9779-RA | 1..672 | 78..749 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps24-RA | 1..672 | 78..749 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9779-RA | 38..1112 | 1..1075 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vps24-RA | 38..1112 | 1..1075 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vps24-RA | 40..1114 | 1..1075 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9779-RA | 38..1112 | 1..1075 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps24-RA | 40..1114 | 1..1075 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4309647..4310358 | 364..1075 | 100 | <- | Minus |
3R | 4310414..4310654 | 123..363 | 100 | <- | Minus |
3R | 4310787..4310908 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4309647..4310358 | 364..1075 | 100 | <- | Minus |
3R | 4310414..4310654 | 123..363 | 100 | <- | Minus |
3R | 4310787..4310908 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4309647..4310358 | 364..1075 | 100 | <- | Minus |
3R | 4310414..4310654 | 123..363 | 100 | <- | Minus |
3R | 4310787..4310908 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 135369..136080 | 364..1075 | 100 | <- | Minus |
arm_3R | 136136..136376 | 123..363 | 100 | <- | Minus |
arm_3R | 136509..136630 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4050478..4051189 | 364..1075 | 100 | <- | Minus |
3R | 4051245..4051485 | 123..363 | 100 | <- | Minus |
3R | 4051618..4051739 | 1..122 | 100 | Minus |
Translation from 77 to 748
> GH14561.hyp MGLFGRTPSKDPKEQVQEWTHKIRKEGNQLDRQIRSIQREEEKVKRSLKQ AAQKNDRDTCVILAKEIVNARKAINRIYTSKAHLNSIQMQMKNQLSTLRV AGSLQKSTEVLQAMQSLVRYPELAGIMRDMSKEMMKAGIIEEMLDETMDS LEESEELEEEASKEVDKVLWEITDGKLGEAPLPPEATPADKASASAARVE AEQDDEEGEELQEMQSRLASLRS*
Translation from 77 to 748
> GH14561.pep MGLFGRTPSKDPKEQVQEWTHKIRKEGNQLDRQIRSIQREEEKVKRSLKQ AAQKNDRDTCVILAKEIVNARKAINRIYTSKAHLNSIQMQMKNQLSTLRV AGSLQKSTEVLQAMQSLVRYPELAGIMRDMSKEMMKAGIIEEMLDETMDS LEESEELEEEASKEVDKVLWEITDGKLGEAPLPPEATPADKASASAARVE AEQDDEEGEELQEMQSRLASLRS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16818-PA | 226 | GF16818-PA | 1..226 | 1..223 | 930 | 91.2 | Plus |
Dana\GF23969-PA | 212 | GF23969-PA | 5..184 | 3..181 | 163 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11685-PA | 223 | GG11685-PA | 1..223 | 1..223 | 1124 | 96.9 | Plus |
Dere\GG15261-PA | 212 | GG15261-PA | 5..211 | 3..223 | 161 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17415-PA | 225 | GH17415-PA | 1..225 | 1..223 | 977 | 92 | Plus |
Dgri\GH16177-PA | 212 | GH16177-PA | 5..211 | 3..223 | 179 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps24-PB | 223 | CG9779-PB | 1..223 | 1..223 | 1103 | 100 | Plus |
Vps24-PA | 223 | CG9779-PA | 1..223 | 1..223 | 1103 | 100 | Plus |
CHMP2B-PA | 212 | CG4618-PA | 5..205 | 3..206 | 227 | 28 | Plus |
Vps2-PA | 256 | CG14542-PA | 4..183 | 3..181 | 195 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22744-PA | 223 | GI22744-PA | 1..223 | 1..223 | 983 | 92.8 | Plus |
Dmoj\GI13330-PA | 212 | GI13330-PA | 5..184 | 3..181 | 182 | 29.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12331-PA | 223 | GL12331-PA | 1..223 | 1..223 | 997 | 94.2 | Plus |
Dper\GL22617-PA | 212 | GL22617-PA | 5..189 | 3..186 | 179 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22030-PA | 223 | GA22030-PA | 1..223 | 1..223 | 988 | 93.3 | Plus |
Dpse\GA18306-PA | 212 | GA18306-PA | 5..189 | 3..186 | 179 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10712-PA | 223 | GM10712-PA | 1..223 | 1..223 | 1135 | 97.8 | Plus |
Dsec\GM14695-PA | 212 | GM14695-PA | 5..211 | 3..223 | 163 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19689-PA | 223 | GD19689-PA | 1..223 | 1..223 | 1135 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22745-PA | 223 | GJ22745-PA | 1..223 | 1..223 | 996 | 93.7 | Plus |
Dvir\GJ13157-PA | 212 | GJ13157-PA | 5..211 | 3..223 | 221 | 28.1 | Plus |