Clone GH14578 Report

Search the DGRC for GH14578

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:145
Well:78
Vector:pOT2
Associated Gene/TranscriptCG3323-RA
Protein status:GH14578.pep: gold
Sequenced Size:2681

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3323 2003-01-01 Sim4 clustering to Release 3
CG3323 2008-04-29 Release 5.5 accounting
CG3323 2008-08-15 Release 5.9 accounting
CG3323 2008-12-18 5.12 accounting

Clone Sequence Records

GH14578.complete Sequence

2681 bp (2681 high quality bases) assembled on 2005-07-22

GenBank Submission: BT023788

> GH14578.complete
AACAGTGCTCCCACTCCCAATATTTATTTTATAAGCTCGACATTACAATA
AATCGAACACAAAACGAAGGTCACATATTATATATATATATATATATATA
TATATATAGCAGATGTCGCAATAGATCGCTGTAGCGGAGCAACCAACATG
AATCGCAATCGAATCAATCAGATACGCCAGTTAGATCGCGGCCAGGAGGG
ACTGCCGCAAGTCATCCAAATGCAGGGACAGGCACAGGTTCAGCTGGGCG
GCGACCAGGGTAATCACGTCGGCAACGAGGGACAAGCGACGGGCAATCAG
AATGTCCGCCGCAAGATGACCTACACCAGAACGGAGATGCTGTCGCGTGG
CCTGCCCACCGTTAACAACAGCAATCGTTCGGCTCGAAACTGCAACACAG
CTGGACAGGATTGGACCAGTCAATTGTCGCCCAGACATCGTTACGCACAA
CCACCAAAGTCCGGAATACCGGTCCCTCCGTTGTTCCTAAGCAGCACCCA
TGCAAGCACCAATAAGAATGTCACCACTGCCAGTCGTCAGCGTAGTTTCC
TGCCCCGAGTGGCCAAATTGCCAAACAGAGCGGACAAATCGCCGAGGAAG
AATCAATATCGCGAAGCTCTGACCACTGAGGTCACGGTGGAGCAATCTCA
GACGTTGCCATTGGGCAATCACAAGGCTAAACATTTGGTGAATACACCAC
ATGACAGCGAGAGCAGCATTCTGCAGGACGGCAGTGATGATAAGCTAATA
AGCGACAGCGGCAGCTCAATGGATCACGACAAGATCAAATTGGCCAAGGC
CATACGCCTGCCGGATGAGGGGAACAAGAGTTTCGTCTATGTATGCAAGC
CGGTGAAGAAGGTCAAAGCTCTGTTGACTGCCAGAAAATTGCGCGCTAGC
AGCGAGCACTTGAATGGCCCAAAGGATGGTGAGTTTAGCTTGCAGGAACA
GGAGACATTCAAGCTGCAGAGGACCATTTCCGAGGAGGCTCTATGCAGCC
GTGGCGCCGGCGAGGGATACACACTCTCGCCCGTCGAGGGACTGGCACAG
AGCACATCGACCACCTCCAGCCAGTTGGATAGTCCCACATTGGCGGCCAT
GCTGCAGCGCCAGCAGCAATTCGAGTCGAAGGCGGTTGGCAGTCAGGACC
GTTTGAGGTTGCAATTGGAGGAGGTGTGCCACAGGCACAATAATCAGCGC
CAGCTGGAAAAGGATCAGTACGAGAAGGAGCAGCGCCAATTGGAATTGGA
TCAGGTGTCAAAGAAACTGCCCGTGCTGCAGCATGAGATACATATGCTGC
ATAAGGTGAGCGAAAAACTGGAGGCGACACTAAGGGCCACCAATATACCC
AAGCCGAGAAGCAACGTAATCATTACGGATATAAGCCGGCAATCATCTGG
ACGTTTCTACACACCGCGCACCAGTCCCAATCAATTGGACGAGCTGCCCA
TTAGGAAATTGTGTTGTTTGCGCTTGGAATATATACCAGCTATTGAGATG
CGGGCACGCATCATTGGCACCGTTTGCCATGTGGGCTTTGTCCAAGAGTT
TCGCATCGAGACCAAAACACTTAACGAGCTAAAGACGGCGGATGAGTCGC
AATGCTTCTATTTACCGGCACCCAAAGAGGAACCGCCATTGGTCCAGCTC
AACGAGGATGATCCATTGCAGTGCACCAACTTTCGTCAGTTGCGTAAGAA
TCCGAATATGCTGTTTCAGCAACTGCGAAAAGTGCCCGGCGCTGGGGGAT
CCTTTAATCTTTTGGATCAGGACACAATGTTCTTCAATAGTCTGGCCTAT
GCGGATTCAAAAATCATGGATGCTAACACCGTCGAACAGCTTGAGGTGGC
CACACGCGAGGCGGGTGGCGGTGGAGCAACTATGGCCCATTATGGCGGAG
CCATTGCCTATTCACGCCTCTCGGTGCGTCTCAACGAAGTGGGCGTGGAT
GATGCTGCTGCTGCTGCTGCTCCTCCTACTCCTGCAGTGAAATCAGAGGA
GCAGGGCGATCGTCTAACTGAATGTCCTTGTCAGGTGAACAATACCACTC
AAACGGACGTGGAATTGTCCAAGTTGGAGAAAATTCGAGAAGCGGAAGAG
GAAATTAGTTCACCAGACTTTACACCCAATCCCAGTCCCAGGACAAGGAA
GCGAATGAAAGTGGAGGAGCCGAACGGCAAAGTGCAAGAGGAAGACGCGT
TGGAATCCAATCTCGATTCGCGACCAAAGAAGACCAGGAAAGTAATAACT
CGTAGAGCGCCCGATCCACCCGTTCGTTGTGACGTGGAGCCCAAGGTGCG
TTTGAAGTTGCTCAAAACCGTATTGGTGGGAATGGTCCAGATCGCTGTTA
TATTAGTTCTCATCATGGCCATCGGATCTCCGGATATTATCTGCTAAGCT
ACACAACCATCGAAATATTGCCAAGATGCCATAGAAAAAGAAGCAGTGAA
TGCAAAAGTAGGAGAGAGAAAAACTGTAGCGGGAAATGTGGCGATAATAG
CAAGTAGCGGGAAAAGCACCGATAACCGGATTCGGTGTTTGATTTCACAT
TATTTTTCGAATTTATTGTTTTCTTACTCGGGCCCAAGCGAAGCCACGTC
AAAGTTAATAAAATTTCATGTGTATTGCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH14578.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3323-RA 2767 CG3323-RA 55..2685 1..2631 13155 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5195519..5197795 2628..361 11080 99.2 Minus
chrX 22417052 chrX 5197867..5198231 365..1 1750 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:52:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5302985..5305255 2631..361 11355 100 Minus
X 23542271 X 5305327..5305691 365..1 1810 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5311083..5313353 2631..361 11355 100 Minus
X 23527363 X 5313425..5313789 365..1 1810 99.7 Minus
Blast to na_te.dros performed on 2019-03-16 08:57:20 has no hits.

GH14578.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:58:21 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5195519..5197794 362..2628 99 <- Minus
chrX 5197871..5198231 1..361 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:42:59 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3323-RA 1..2250 148..2397 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:56:29 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3323-RA 1..2250 148..2397 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:32:54 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3323-RA 1..2250 148..2397 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:37:12 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3323-RA 1..2250 148..2397 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:54:46 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3323-RA 1..2250 148..2397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:34:34 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3323-RA 28..2655 1..2628 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:56:29 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3323-RA 28..2655 1..2628 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:32:54 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3323-RA 1..2628 1..2628 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:37:13 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3323-RA 28..2655 1..2628 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:54:46 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3323-RA 1..2628 1..2628 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:21 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
X 5302988..5305254 362..2628 100 <- Minus
X 5305331..5305691 1..361 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:21 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
X 5302988..5305254 362..2628 100 <- Minus
X 5305331..5305691 1..361 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:21 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
X 5302988..5305254 362..2628 100 <- Minus
X 5305331..5305691 1..361 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:32:54 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5199364..5199724 1..361 100   Minus
arm_X 5197021..5199287 362..2628 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:49 Download gff for GH14578.complete
Subject Subject Range Query Range Percent Splice Strand
X 5311086..5313352 362..2628 100 <- Minus
X 5313429..5313789 1..361 100   Minus

GH14578.pep Sequence

Translation from 147 to 2396

> GH14578.pep
MNRNRINQIRQLDRGQEGLPQVIQMQGQAQVQLGGDQGNHVGNEGQATGN
QNVRRKMTYTRTEMLSRGLPTVNNSNRSARNCNTAGQDWTSQLSPRHRYA
QPPKSGIPVPPLFLSSTHASTNKNVTTASRQRSFLPRVAKLPNRADKSPR
KNQYREALTTEVTVEQSQTLPLGNHKAKHLVNTPHDSESSILQDGSDDKL
ISDSGSSMDHDKIKLAKAIRLPDEGNKSFVYVCKPVKKVKALLTARKLRA
SSEHLNGPKDGEFSLQEQETFKLQRTISEEALCSRGAGEGYTLSPVEGLA
QSTSTTSSQLDSPTLAAMLQRQQQFESKAVGSQDRLRLQLEEVCHRHNNQ
RQLEKDQYEKEQRQLELDQVSKKLPVLQHEIHMLHKVSEKLEATLRATNI
PKPRSNVIITDISRQSSGRFYTPRTSPNQLDELPIRKLCCLRLEYIPAIE
MRARIIGTVCHVGFVQEFRIETKTLNELKTADESQCFYLPAPKEEPPLVQ
LNEDDPLQCTNFRQLRKNPNMLFQQLRKVPGAGGSFNLLDQDTMFFNSLA
YADSKIMDANTVEQLEVATREAGGGGATMAHYGGAIAYSRLSVRLNEVGV
DDAAAAAAPPTPAVKSEEQGDRLTECPCQVNNTTQTDVELSKLEKIREAE
EEISSPDFTPNPSPRTRKRMKVEEPNGKVQEEDALESNLDSRPKKTRKVI
TRRAPDPPVRCDVEPKVRLKLLKTVLVGMVQIAVILVLIMAIGSPDIIC*

GH14578.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20955-PA 875 GF20955-PA 1..875 1..749 1072 38.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18506-PA 742 GG18506-PA 1..742 1..749 2425 67.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3323-PA 749 CG3323-PA 1..749 1..749 3842 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15307-PA 806 GI15307-PA 280..806 212..749 537 32.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12654-PA 739 GM12654-PA 1..739 1..749 3182 82.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24596-PA 731 GD24596-PA 1..731 1..749 3131 81.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16579-PA 746 GJ16579-PA 226..270 212..256 163 71.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10335-PA 786 GK10335-PA 214..654 212..599 514 35.2 Plus
Dwil\GK10726-PA 287 GK10726-PA 40..199 432..577 252 39.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16823-PA 754 GE16823-PA 1..754 1..749 2428 66.1 Plus

GH14578.hyp Sequence

Translation from 147 to 2396

> GH14578.hyp
MNRNRINQIRQLDRGQEGLPQVIQMQGQAQVQLGGDQGNHVGNEGQATGN
QNVRRKMTYTRTEMLSRGLPTVNNSNRSARNCNTAGQDWTSQLSPRHRYA
QPPKSGIPVPPLFLSSTHASTNKNVTTASRQRSFLPRVAKLPNRADKSPR
KNQYREALTTEVTVEQSQTLPLGNHKAKHLVNTPHDSESSILQDGSDDKL
ISDSGSSMDHDKIKLAKAIRLPDEGNKSFVYVCKPVKKVKALLTARKLRA
SSEHLNGPKDGEFSLQEQETFKLQRTISEEALCSRGAGEGYTLSPVEGLA
QSTSTTSSQLDSPTLAAMLQRQQQFESKAVGSQDRLRLQLEEVCHRHNNQ
RQLEKDQYEKEQRQLELDQVSKKLPVLQHEIHMLHKVSEKLEATLRATNI
PKPRSNVIITDISRQSSGRFYTPRTSPNQLDELPIRKLCCLRLEYIPAIE
MRARIIGTVCHVGFVQEFRIETKTLNELKTADESQCFYLPAPKEEPPLVQ
LNEDDPLQCTNFRQLRKNPNMLFQQLRKVPGAGGSFNLLDQDTMFFNSLA
YADSKIMDANTVEQLEVATREAGGGGATMAHYGGAIAYSRLSVRLNEVGV
DDAAAAAAPPTPAVKSEEQGDRLTECPCQVNNTTQTDVELSKLEKIREAE
EEISSPDFTPNPSPRTRKRMKVEEPNGKVQEEDALESNLDSRPKKTRKVI
TRRAPDPPVRCDVEPKVRLKLLKTVLVGMVQIAVILVLIMAIGSPDIIC*

GH14578.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3323-PA 749 CG3323-PA 1..749 1..749 3842 100 Plus