Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH14578.complete Sequence
2681 bp (2681 high quality bases) assembled on 2005-07-22
GenBank Submission: BT023788
> GH14578.complete
AACAGTGCTCCCACTCCCAATATTTATTTTATAAGCTCGACATTACAATA
AATCGAACACAAAACGAAGGTCACATATTATATATATATATATATATATA
TATATATAGCAGATGTCGCAATAGATCGCTGTAGCGGAGCAACCAACATG
AATCGCAATCGAATCAATCAGATACGCCAGTTAGATCGCGGCCAGGAGGG
ACTGCCGCAAGTCATCCAAATGCAGGGACAGGCACAGGTTCAGCTGGGCG
GCGACCAGGGTAATCACGTCGGCAACGAGGGACAAGCGACGGGCAATCAG
AATGTCCGCCGCAAGATGACCTACACCAGAACGGAGATGCTGTCGCGTGG
CCTGCCCACCGTTAACAACAGCAATCGTTCGGCTCGAAACTGCAACACAG
CTGGACAGGATTGGACCAGTCAATTGTCGCCCAGACATCGTTACGCACAA
CCACCAAAGTCCGGAATACCGGTCCCTCCGTTGTTCCTAAGCAGCACCCA
TGCAAGCACCAATAAGAATGTCACCACTGCCAGTCGTCAGCGTAGTTTCC
TGCCCCGAGTGGCCAAATTGCCAAACAGAGCGGACAAATCGCCGAGGAAG
AATCAATATCGCGAAGCTCTGACCACTGAGGTCACGGTGGAGCAATCTCA
GACGTTGCCATTGGGCAATCACAAGGCTAAACATTTGGTGAATACACCAC
ATGACAGCGAGAGCAGCATTCTGCAGGACGGCAGTGATGATAAGCTAATA
AGCGACAGCGGCAGCTCAATGGATCACGACAAGATCAAATTGGCCAAGGC
CATACGCCTGCCGGATGAGGGGAACAAGAGTTTCGTCTATGTATGCAAGC
CGGTGAAGAAGGTCAAAGCTCTGTTGACTGCCAGAAAATTGCGCGCTAGC
AGCGAGCACTTGAATGGCCCAAAGGATGGTGAGTTTAGCTTGCAGGAACA
GGAGACATTCAAGCTGCAGAGGACCATTTCCGAGGAGGCTCTATGCAGCC
GTGGCGCCGGCGAGGGATACACACTCTCGCCCGTCGAGGGACTGGCACAG
AGCACATCGACCACCTCCAGCCAGTTGGATAGTCCCACATTGGCGGCCAT
GCTGCAGCGCCAGCAGCAATTCGAGTCGAAGGCGGTTGGCAGTCAGGACC
GTTTGAGGTTGCAATTGGAGGAGGTGTGCCACAGGCACAATAATCAGCGC
CAGCTGGAAAAGGATCAGTACGAGAAGGAGCAGCGCCAATTGGAATTGGA
TCAGGTGTCAAAGAAACTGCCCGTGCTGCAGCATGAGATACATATGCTGC
ATAAGGTGAGCGAAAAACTGGAGGCGACACTAAGGGCCACCAATATACCC
AAGCCGAGAAGCAACGTAATCATTACGGATATAAGCCGGCAATCATCTGG
ACGTTTCTACACACCGCGCACCAGTCCCAATCAATTGGACGAGCTGCCCA
TTAGGAAATTGTGTTGTTTGCGCTTGGAATATATACCAGCTATTGAGATG
CGGGCACGCATCATTGGCACCGTTTGCCATGTGGGCTTTGTCCAAGAGTT
TCGCATCGAGACCAAAACACTTAACGAGCTAAAGACGGCGGATGAGTCGC
AATGCTTCTATTTACCGGCACCCAAAGAGGAACCGCCATTGGTCCAGCTC
AACGAGGATGATCCATTGCAGTGCACCAACTTTCGTCAGTTGCGTAAGAA
TCCGAATATGCTGTTTCAGCAACTGCGAAAAGTGCCCGGCGCTGGGGGAT
CCTTTAATCTTTTGGATCAGGACACAATGTTCTTCAATAGTCTGGCCTAT
GCGGATTCAAAAATCATGGATGCTAACACCGTCGAACAGCTTGAGGTGGC
CACACGCGAGGCGGGTGGCGGTGGAGCAACTATGGCCCATTATGGCGGAG
CCATTGCCTATTCACGCCTCTCGGTGCGTCTCAACGAAGTGGGCGTGGAT
GATGCTGCTGCTGCTGCTGCTCCTCCTACTCCTGCAGTGAAATCAGAGGA
GCAGGGCGATCGTCTAACTGAATGTCCTTGTCAGGTGAACAATACCACTC
AAACGGACGTGGAATTGTCCAAGTTGGAGAAAATTCGAGAAGCGGAAGAG
GAAATTAGTTCACCAGACTTTACACCCAATCCCAGTCCCAGGACAAGGAA
GCGAATGAAAGTGGAGGAGCCGAACGGCAAAGTGCAAGAGGAAGACGCGT
TGGAATCCAATCTCGATTCGCGACCAAAGAAGACCAGGAAAGTAATAACT
CGTAGAGCGCCCGATCCACCCGTTCGTTGTGACGTGGAGCCCAAGGTGCG
TTTGAAGTTGCTCAAAACCGTATTGGTGGGAATGGTCCAGATCGCTGTTA
TATTAGTTCTCATCATGGCCATCGGATCTCCGGATATTATCTGCTAAGCT
ACACAACCATCGAAATATTGCCAAGATGCCATAGAAAAAGAAGCAGTGAA
TGCAAAAGTAGGAGAGAGAAAAACTGTAGCGGGAAATGTGGCGATAATAG
CAAGTAGCGGGAAAAGCACCGATAACCGGATTCGGTGTTTGATTTCACAT
TATTTTTCGAATTTATTGTTTTCTTACTCGGGCCCAAGCGAAGCCACGTC
AAAGTTAATAAAATTTCATGTGTATTGCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GH14578.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3323-RA | 2767 | CG3323-RA | 55..2685 | 1..2631 | 13155 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 5195519..5197795 | 2628..361 | 11080 | 99.2 | Minus |
chrX | 22417052 | chrX | 5197867..5198231 | 365..1 | 1750 | 98.6 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:52:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5302985..5305255 | 2631..361 | 11355 | 100 | Minus |
X | 23542271 | X | 5305327..5305691 | 365..1 | 1810 | 99.7 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 5311083..5313353 | 2631..361 | 11355 | 100 | Minus |
X | 23527363 | X | 5313425..5313789 | 365..1 | 1810 | 99.7 | Minus |
Blast to na_te.dros performed on 2019-03-16 08:57:20 has no hits.
GH14578.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:58:21 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 5195519..5197794 | 362..2628 | 99 | <- | Minus |
chrX | 5197871..5198231 | 1..361 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:42:59 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3323-RA | 1..2250 | 148..2397 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:56:29 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3323-RA | 1..2250 | 148..2397 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:32:54 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3323-RA | 1..2250 | 148..2397 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:37:12 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3323-RA | 1..2250 | 148..2397 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:54:46 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3323-RA | 1..2250 | 148..2397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:34:34 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3323-RA | 28..2655 | 1..2628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:56:29 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3323-RA | 28..2655 | 1..2628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:32:54 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3323-RA | 1..2628 | 1..2628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:37:13 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3323-RA | 28..2655 | 1..2628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:54:46 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3323-RA | 1..2628 | 1..2628 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:21 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5302988..5305254 | 362..2628 | 100 | <- | Minus |
X | 5305331..5305691 | 1..361 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:21 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5302988..5305254 | 362..2628 | 100 | <- | Minus |
X | 5305331..5305691 | 1..361 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:21 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5302988..5305254 | 362..2628 | 100 | <- | Minus |
X | 5305331..5305691 | 1..361 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:32:54 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5199364..5199724 | 1..361 | 100 | | Minus |
arm_X | 5197021..5199287 | 362..2628 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:49 Download gff for
GH14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5311086..5313352 | 362..2628 | 100 | <- | Minus |
X | 5313429..5313789 | 1..361 | 100 | | Minus |
GH14578.pep Sequence
Translation from 147 to 2396
> GH14578.pep
MNRNRINQIRQLDRGQEGLPQVIQMQGQAQVQLGGDQGNHVGNEGQATGN
QNVRRKMTYTRTEMLSRGLPTVNNSNRSARNCNTAGQDWTSQLSPRHRYA
QPPKSGIPVPPLFLSSTHASTNKNVTTASRQRSFLPRVAKLPNRADKSPR
KNQYREALTTEVTVEQSQTLPLGNHKAKHLVNTPHDSESSILQDGSDDKL
ISDSGSSMDHDKIKLAKAIRLPDEGNKSFVYVCKPVKKVKALLTARKLRA
SSEHLNGPKDGEFSLQEQETFKLQRTISEEALCSRGAGEGYTLSPVEGLA
QSTSTTSSQLDSPTLAAMLQRQQQFESKAVGSQDRLRLQLEEVCHRHNNQ
RQLEKDQYEKEQRQLELDQVSKKLPVLQHEIHMLHKVSEKLEATLRATNI
PKPRSNVIITDISRQSSGRFYTPRTSPNQLDELPIRKLCCLRLEYIPAIE
MRARIIGTVCHVGFVQEFRIETKTLNELKTADESQCFYLPAPKEEPPLVQ
LNEDDPLQCTNFRQLRKNPNMLFQQLRKVPGAGGSFNLLDQDTMFFNSLA
YADSKIMDANTVEQLEVATREAGGGGATMAHYGGAIAYSRLSVRLNEVGV
DDAAAAAAPPTPAVKSEEQGDRLTECPCQVNNTTQTDVELSKLEKIREAE
EEISSPDFTPNPSPRTRKRMKVEEPNGKVQEEDALESNLDSRPKKTRKVI
TRRAPDPPVRCDVEPKVRLKLLKTVLVGMVQIAVILVLIMAIGSPDIIC*
GH14578.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF20955-PA | 875 | GF20955-PA | 1..875 | 1..749 | 1072 | 38.6 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG18506-PA | 742 | GG18506-PA | 1..742 | 1..749 | 2425 | 67.8 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3323-PA | 749 | CG3323-PA | 1..749 | 1..749 | 3842 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI15307-PA | 806 | GI15307-PA | 280..806 | 212..749 | 537 | 32.5 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM12654-PA | 739 | GM12654-PA | 1..739 | 1..749 | 3182 | 82.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD24596-PA | 731 | GD24596-PA | 1..731 | 1..749 | 3131 | 81.2 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ16579-PA | 746 | GJ16579-PA | 226..270 | 212..256 | 163 | 71.1 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK10335-PA | 786 | GK10335-PA | 214..654 | 212..599 | 514 | 35.2 | Plus |
Dwil\GK10726-PA | 287 | GK10726-PA | 40..199 | 432..577 | 252 | 39.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE16823-PA | 754 | GE16823-PA | 1..754 | 1..749 | 2428 | 66.1 | Plus |
GH14578.hyp Sequence
Translation from 147 to 2396
> GH14578.hyp
MNRNRINQIRQLDRGQEGLPQVIQMQGQAQVQLGGDQGNHVGNEGQATGN
QNVRRKMTYTRTEMLSRGLPTVNNSNRSARNCNTAGQDWTSQLSPRHRYA
QPPKSGIPVPPLFLSSTHASTNKNVTTASRQRSFLPRVAKLPNRADKSPR
KNQYREALTTEVTVEQSQTLPLGNHKAKHLVNTPHDSESSILQDGSDDKL
ISDSGSSMDHDKIKLAKAIRLPDEGNKSFVYVCKPVKKVKALLTARKLRA
SSEHLNGPKDGEFSLQEQETFKLQRTISEEALCSRGAGEGYTLSPVEGLA
QSTSTTSSQLDSPTLAAMLQRQQQFESKAVGSQDRLRLQLEEVCHRHNNQ
RQLEKDQYEKEQRQLELDQVSKKLPVLQHEIHMLHKVSEKLEATLRATNI
PKPRSNVIITDISRQSSGRFYTPRTSPNQLDELPIRKLCCLRLEYIPAIE
MRARIIGTVCHVGFVQEFRIETKTLNELKTADESQCFYLPAPKEEPPLVQ
LNEDDPLQCTNFRQLRKNPNMLFQQLRKVPGAGGSFNLLDQDTMFFNSLA
YADSKIMDANTVEQLEVATREAGGGGATMAHYGGAIAYSRLSVRLNEVGV
DDAAAAAAPPTPAVKSEEQGDRLTECPCQVNNTTQTDVELSKLEKIREAE
EEISSPDFTPNPSPRTRKRMKVEEPNGKVQEEDALESNLDSRPKKTRKVI
TRRAPDPPVRCDVEPKVRLKLLKTVLVGMVQIAVILVLIMAIGSPDIIC*
GH14578.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3323-PA | 749 | CG3323-PA | 1..749 | 1..749 | 3842 | 100 | Plus |