Clone GH14720 Report

Search the DGRC for GH14720

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:147
Well:20
Vector:pOT2
Associated Gene/TranscriptMfe2-RA
Protein status:GH14720.pep: gold
Preliminary Size:2206
Sequenced Size:2220

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3415 2001-01-01 Release 2 assignment
CG3415 2001-07-04 Blastp of sequenced clone
CG3415 2003-01-01 Sim4 clustering to Release 3
CG3415 2008-04-29 Release 5.5 accounting
CG3415 2008-08-15 Release 5.9 accounting
CG3415 2008-12-18 5.12 accounting

Clone Sequence Records

GH14720.complete Sequence

2220 bp (2220 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051493

> GH14720.complete
CCGATTAAACGATTGCAAAATTATCTCGGCAGCGAATAGTGATGCACTTT
GTACCACTGATACTGGGTTAATCTGTGCATATTCGGGCATACCATACCAT
CATACGGCGAATCTACGAGAACTCCGAAAAAGCGTTGCCGCAGAGACCGG
ATTTGTGCAGCGAAACCAGAAATTGCGATTGCTATTGACCAATAGACAGA
CCATGTCCTCATCCGATGGAAAACTTCGTTACGATGGCCGTGTGGCGGTG
GTGACGGGAGCTGGTGCCGGTTTGGGCCGCGAGTACGCACTGCTCTTCGC
GGAGCGTGGCGCCAAGGTGGTGGTCAACGATCTGGGTGGCACCCACTCCG
GCGATGGAGCATCGCAGCGGGCCGCCGACATTGTGGTGGATGAGATCCGT
AAGGCCGGCGGCGAGGCGGTGGCCGACTACAACTCGGTAATCGATGGGGC
AAAGGTCATCGAGACGGCCATCAAAGCTTTCGGACGCGTCGATATCCTGG
TCAACAATGCCGGCATTCTACGCGACAGGAGTCTGGTGAAGACCAGCGAA
CAGGACTGGAATCTGGTCAACGATGTCCATCTGAAGGGCAGCTTTAAGTG
CACCCAGGCGGCATTCCCGTACATGAAGAAGCAGAACTATGGCCGCATCA
TCATGACATCGTCCAACTCGGGCATCTATGGTAATTTCGGGCAGGTCAAC
TACACTGCCGCCAAGATGGGCCTCATCGGATTGGCCAACACGGTTGCCAT
CGAGGGAGCCCGCAACAATGTTCTTTGCAACGTCATCGTGCCAACTGCCG
CCAGTCGAATGACCGAGGGCATTCTGCCCGACATTCTCTTCAACGAGCTG
AAGCCCAAGCTGATTGCTCCCGTAGTGGCCTACTTGTGCCACGAGTCCTG
CGAGGATAATGGTAGCTATATCGAGAGTGCCGCCGGCTGGGCCACCAAGC
TGCACATGGTTCGCGGCAAGGGCGCTGTGCTGCGTCCTTCGCTGGACGAC
CCCGTGACCATTGAGTACGTCAAGGATGTGTGGTCGAATGTGACCGACAT
GTCCAAGGCCAAGCACTTGGGTGCCATCGCAGAGGCCTCCGGCACCCTGC
TGGAAGTGCTTGAGAAGCTCAAGGAAGGCGGCGGCGACGCCATCGAGGAT
GCCTTCGAGTTCAATAGCAAAGAGCTTATTACCTACGCCCTGGGCATTGG
GGCATCCGTCAAAAACGCGAAGGACATGCGCTTCCTGTACGAAAACGATG
CCGATTTCGCCGCCATTCCAACTTTCTTCGTTCTGCCCGGCCTTCTGCTG
CAAATGTCCACCGACAAGCTGCTCAGCAAGGCTTTGCCCAACAGCCAAGT
GGACTTCAGCAACATTCTGCACGGCGAACAGTACCTAGAGATCGTTGACG
ATCTGCCCACCAGTGGCACTTTGCTGACCAACGGCAAGGTCTTCGATGTT
ATGGACAAGGGATCCGGCGCCGTGGTCGTCACCAATAGCGAGTCGTTCGA
CGAAAGTGGCCGCCTGTTGGTGCGCAACCAGAGCACCACTTTCATTGTCG
GCGCTGGCAAATTCGGAGGCAAGAAGGATCCCATCGCTGGTGTAGTTCCG
CTGCAGCCGGCGCCCAATCGCCAACCGGACGCAACCGTCCAGTATACGAC
CAGCGAGGACCAGGCGGCGCTGTACCGTCTGTCCGGCGACAAGAACCCCC
TGCATATCGATCCCCAGATGGCCCTGCTGGCCGGCTTCAAGACACCCATC
CTCCATGGACTCTGCACACTGGGCTTCTCGGTGCGCGCCGTGCTCGCTCA
GTTTGCGGACAACAACCCGGCTCTGTTCAAGGCTGTCAAAGTGCGCTTCT
CCGGACCCGTAATTCCGGGCCAGACTTTGCGCGTGGACTTGTGGAAGCAG
GGCACACGCATCAACTTCCGCACCGTGGTCGTGGAGACCGGCAAGGAGGT
CATATCCGGCGCCTATGTCGACCTGAAGAGCTCACAGGCCAAGCTGTAAG
CGCGGATCACCTAGAGACACATAGTCTGCCTTAGTCGCAATGGATTATCA
TTGACTTTATAATTCGTTTCGCGTCCGTTTTTTTTTGTACATACACTATA
ACAAATATGCCTATACATATGCAATTGTTTAAACGCCCGTGGTGGTAGAA
GTATTTTTTTGTAACACTTTTATAAAACTCCCAATAAAACATCACATAAC
TGAAAAAAAAAAAAAAAAAA

GH14720.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3415.b 2711 CG3415.b 155..2360 1..2206 11030 100 Plus
CG3415-RA 2559 CG3415-RA 155..2360 1..2206 11030 100 Plus
CG3415.a 2158 CG3415.a 70..2152 124..2206 10415 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16162219..16163511 911..2202 6310 99.4 Plus
chrX 22417052 chrX 16161136..16161926 124..914 3925 99.7 Plus
chrX 22417052 chrX 16160669..16160791 1..123 615 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:52:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16272524..16273819 911..2206 6480 100 Plus
X 23542271 X 16271441..16272231 124..914 3955 100 Plus
X 23542271 X 16270974..16271096 1..123 615 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16280622..16281917 911..2206 6480 100 Plus
X 23527363 X 16279539..16280329 124..914 3955 100 Plus
X 23527363 X 16279072..16279194 1..123 615 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:00:36 has no hits.

GH14720.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:01:43 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16160669..16160791 1..123 100 -> Plus
chrX 16161136..16161923 124..911 99 -> Plus
chrX 16162220..16163511 912..2202 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:43:28 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
CG3415-RA 1..1797 203..1999 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:20 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
CG3415-RA 1..1797 203..1999 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:55:41 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
Mfe2-RA 1..1797 203..1999 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:00 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
CG3415-RA 1..1797 203..1999 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:56:00 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
Mfe2-RA 1..1797 203..1999 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:35 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
CG3415-RA 1..2202 1..2202 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:20 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
CG3415-RA 1..2202 1..2202 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:41 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
Mfe2-RA 24..2225 1..2202 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:00 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
CG3415-RA 1..2202 1..2202 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:56:00 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
Mfe2-RA 24..2225 1..2202 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:43 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
X 16270974..16271096 1..123 100 -> Plus
X 16271441..16272228 124..911 100 -> Plus
X 16272525..16273815 912..2202 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:43 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
X 16270974..16271096 1..123 100 -> Plus
X 16271441..16272228 124..911 100 -> Plus
X 16272525..16273815 912..2202 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:43 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
X 16270974..16271096 1..123 100 -> Plus
X 16271441..16272228 124..911 100 -> Plus
X 16272525..16273815 912..2202 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:41 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16165007..16165129 1..123 100 -> Plus
arm_X 16165474..16166261 124..911 100 -> Plus
arm_X 16166558..16167848 912..2202 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:42 Download gff for GH14720.complete
Subject Subject Range Query Range Percent Splice Strand
X 16279072..16279194 1..123 100 -> Plus
X 16279539..16280326 124..911 100 -> Plus
X 16280623..16281913 912..2202 100   Plus

GH14720.hyp Sequence

Translation from 1 to 1998

> GH14720.hyp
RLNDCKIISAANSDALCTTDTGLICAYSGIPYHHTANLRELRKSVAAETG
FVQRNQKLRLLLTNRQTMSSSDGKLRYDGRVAVVTGAGAGLGREYALLFA
ERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGA
KVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKC
TQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAI
EGARNNVLCNVIVPTAASRMTEGILPDILFNELKPKLIAPVVAYLCHESC
EDNGSYIESAAGWATKLHMVRGKGAVLRPSLDDPVTIEYVKDVWSNVTDM
SKAKHLGAIAEASGTLLEVLEKLKEGGGDAIEDAFEFNSKELITYALGIG
ASVKNAKDMRFLYENDADFAAIPTFFVLPGLLLQMSTDKLLSKALPNSQV
DFSNILHGEQYLEIVDDLPTSGTLLTNGKVFDVMDKGSGAVVVTNSESFD
ESGRLLVRNQSTTFIVGAGKFGGKKDPIAGVVPLQPAPNRQPDATVQYTT
SEDQAALYRLSGDKNPLHIDPQMALLAGFKTPILHGLCTLGFSVRAVLAQ
FADNNPALFKAVKVRFSGPVIPGQTLRVDLWKQGTRINFRTVVVETGKEV
ISGAYVDLKSSQAKL*

GH14720.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Mfe2-PB 598 CG3415-PB 1..598 68..665 3038 100 Plus
Mfe2-PA 598 CG3415-PA 1..598 68..665 3038 100 Plus
CG3603-PB 249 CG3603-PB 8..247 79..312 254 33.3 Plus
CG3603-PA 249 CG3603-PA 8..247 79..312 254 33.3 Plus
CG5590-PA 412 CG5590-PA 5..243 73..306 220 31.2 Plus

GH14720.pep Sequence

Translation from 202 to 1998

> GH14720.pep
MSSSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSG
DGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAIKAFGRVDILV
NNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRII
MTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA
SRMTEGILPDILFNELKPKLIAPVVAYLCHESCEDNGSYIESAAGWATKL
HMVRGKGAVLRPSLDDPVTIEYVKDVWSNVTDMSKAKHLGAIAEASGTLL
EVLEKLKEGGGDAIEDAFEFNSKELITYALGIGASVKNAKDMRFLYENDA
DFAAIPTFFVLPGLLLQMSTDKLLSKALPNSQVDFSNILHGEQYLEIVDD
LPTSGTLLTNGKVFDVMDKGSGAVVVTNSESFDESGRLLVRNQSTTFIVG
AGKFGGKKDPIAGVVPLQPAPNRQPDATVQYTTSEDQAALYRLSGDKNPL
HIDPQMALLAGFKTPILHGLCTLGFSVRAVLAQFADNNPALFKAVKVRFS
GPVIPGQTLRVDLWKQGTRINFRTVVVETGKEVISGAYVDLKSSQAKL*

GH14720.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19024-PA 596 GF19024-PA 1..596 1..598 2789 86.6 Plus
Dana\GF22468-PA 249 GF22468-PA 8..241 12..244 240 31.6 Plus
Dana\GF20987-PA 323 GF20987-PA 61..271 12..226 220 30.3 Plus
Dana\GF16296-PA 414 GF16296-PA 5..243 6..239 213 31.2 Plus
Dana\GF18656-PA 256 GF18656-PA 1..184 8..197 188 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17944-PA 598 GG17944-PA 1..598 1..598 3006 93 Plus
Dere\GG18643-PA 249 GG18643-PA 8..248 12..246 238 33.3 Plus
Dere\GG11567-PA 413 GG11567-PA 5..244 6..240 217 31 Plus
Dere\GG17587-PA 320 GG17587-PA 58..241 12..197 208 28.5 Plus
Dere\GG12469-PA 321 GG12469-PA 51..236 11..198 193 29.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12555-PA 601 GH12555-PA 6..601 7..598 2522 77.9 Plus
Dgri\GH12482-PA 248 GH12482-PA 8..247 12..246 243 31.7 Plus
Dgri\GH24349-PA 325 GH24349-PA 63..250 12..205 240 32.5 Plus
Dgri\GH16497-PA 407 GH16497-PA 5..244 6..240 200 30.2 Plus
Dgri\GH17517-PA 257 GH17517-PA 1..185 8..197 180 28.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mfe2-PB 598 CG3415-PB 1..598 1..598 3038 100 Plus
Mfe2-PA 598 CG3415-PA 1..598 1..598 3038 100 Plus
CG3603-PB 249 CG3603-PB 8..247 12..245 254 33.3 Plus
CG3603-PA 249 CG3603-PA 8..247 12..245 254 33.3 Plus
CG5590-PA 412 CG5590-PA 5..243 6..239 220 31.2 Plus
Ldsdh1-PA 320 CG2254-PA 57..241 11..197 206 29.4 Plus
CG3699-PA 251 CG3699-PA 6..179 13..197 195 30 Plus
CG13833-PA 321 CG13833-PA 52..219 12..184 195 31.5 Plus
CG31548-PA 256 CG31548-PA 1..184 8..197 194 28.4 Plus
CG12171-PA 257 CG12171-PA 4..185 10..197 188 29.2 Plus
CG10425-PA 336 CG10425-PA 35..219 12..197 184 29.4 Plus
firl-PE 318 CG14946-PE 55..222 12..184 180 29.4 Plus
firl-PC 318 CG14946-PC 55..222 12..184 180 29.4 Plus
firl-PD 318 CG14946-PD 55..222 12..184 180 29.4 Plus
CG31549-PB 257 CG31549-PB 4..185 10..197 178 27.1 Plus
CG31549-PA 257 CG31549-PA 4..185 10..197 178 27.1 Plus
CG10962-PB 249 CG10962-PB 3..150 9..160 154 29.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11209-PA 596 GI11209-PA 3..596 4..598 2575 79.2 Plus
Dmoj\GI11003-PA 420 GI11003-PA 157..365 11..223 238 32.9 Plus
Dmoj\GI11166-PA 249 GI11166-PA 8..248 12..246 214 30.9 Plus
Dmoj\GI22521-PA 256 GI22521-PA 1..184 8..197 203 29.9 Plus
Dmoj\GI22019-PA 418 GI22019-PA 5..244 6..240 199 29.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15827-PA 597 GL15827-PA 2..597 3..598 2704 83.2 Plus
Dper\GL26900-PA 323 GL26900-PA 60..271 11..226 202 28.4 Plus
Dper\GL13706-PA 413 GL13706-PA 3..211 4..206 201 30.7 Plus
Dper\GL20048-PA 286 GL20048-PA 5..225 6..222 186 27.9 Plus
Dper\GL19942-PA 295 GL19942-PA 8..162 12..171 182 37.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17436-PA 597 GA17436-PA 2..597 3..598 2704 83.2 Plus
Dpse\GA17551-PB 242 GA17551-PB 8..241 12..244 231 31.7 Plus
Dpse\GA15325-PA 323 GA15325-PA 60..271 11..226 207 28.4 Plus
Dpse\GA18991-PA 413 GA18991-PA 3..211 4..206 201 30.7 Plus
Dpse\GA24263-PA 286 GA24263-PA 5..225 6..222 185 27.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19262-PA 249 GM19262-PA 8..248 12..246 236 33.3 Plus
Dsec\GM16349-PA 413 GM16349-PA 5..244 6..240 217 31 Plus
Dsec\GM11216-PA 318 GM11216-PA 56..239 12..197 212 30.1 Plus
Dsec\GM23600-PA 321 GM23600-PA 52..224 12..189 190 30.6 Plus
Dsec\GM19006-PA 251 GM19006-PA 1..179 8..197 182 29.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16628-PA 249 GD16628-PA 8..248 12..246 236 33.3 Plus
Dsim\GD21345-PA 413 GD21345-PA 5..244 6..240 218 31 Plus
Dsim\GD18413-PA 321 GD18413-PA 52..224 12..189 189 30.6 Plus
Dsim\GD16445-PA 251 GD16445-PA 1..179 8..197 182 29.2 Plus
Dsim\GD19595-PA 256 GD19595-PA 1..184 8..197 179 28.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18503-PA 596 GJ18503-PA 2..596 3..598 2621 80.5 Plus
Dvir\GJ15296-PA 249 GJ15296-PA 8..248 12..246 234 31.7 Plus
Dvir\GJ15602-PA 328 GJ15602-PA 66..276 12..226 222 33 Plus
Dvir\GJ10125-PA 255 GJ10125-PA 1..183 8..197 209 31.1 Plus
Dvir\GJ10468-PA 407 GJ10468-PA 5..244 6..240 203 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25668-PA 595 GK25668-PA 1..595 1..598 2620 81.3 Plus
Dwil\GK25534-PA 248 GK25534-PA 8..246 12..245 216 29.4 Plus
Dwil\GK25275-PA 332 GK25275-PA 69..277 11..223 215 30.6 Plus
Dwil\GK11762-PA 408 GK11762-PA 5..243 6..239 198 28.4 Plus
Dwil\GK11608-PA 320 GK11608-PA 52..234 12..198 190 31.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17252-PA 641 GE17252-PA 44..641 1..598 3046 95 Plus
Dyak\GE16292-PA 249 GE16292-PA 8..248 12..246 243 33.7 Plus
Dyak\GE17487-PA 318 GE17487-PA 56..239 12..197 212 29.5 Plus
Dyak\GE23752-PA 413 GE23752-PA 5..244 6..240 212 30.6 Plus
Dyak\GE24152-PA 256 GE24152-PA 1..184 8..197 191 29.4 Plus