BDGP Sequence Production Resources |
Search the DGRC for GH14803
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 148 |
Well: | 3 |
Vector: | pOT2 |
Associated Gene/Transcript | retinin-RA |
Protein status: | GH14803.pep: gold |
Preliminary Size: | 1758 |
Sequenced Size: | 999 |
Gene | Date | Evidence |
---|---|---|
CG13057 | 2001-09-19 | Blastp of sequenced clone |
CG13057 | 2003-01-01 | Sim4 clustering to Release 3 |
retinin | 2008-04-29 | Release 5.5 accounting |
retinin | 2008-08-15 | Release 5.9 accounting |
retinin | 2008-12-18 | 5.12 accounting |
999 bp (999 high quality bases) assembled on 2001-09-19
GenBank Submission: AY059445
> GH14803.complete AGAGCTTTGTGGTAAACAACTCGGCCTTCAACGGTTACCCCAGTCCGGGA ATGGAGAACATAGCTAAGATAAACTCATCGTTCGAGTGCAGCTATTTGGT GGGCAGCCGGAATGCCTATGGCCGCAGGCGCAAGTACTCTACGGATGAGC CAGCAGGCGTGTGCACCACGCCTCGTGCCGAATTCGGCACGAGGCGGATC TAAAGGAAGACTGCTATAATCATGTCTAGATTGTTCCTGCCCGTCTTGGC CATTGTGCTGGTCTCCATCGGAGCTTCGCATACAGCCAGCTTGGAGTGGC CCTCGAATCTTGTGGCTCTCAGTTCGGTCAAGTCCTCGCAGCTGCTTCCG ATTGCCAGCGAGGATTCCGTTGAGTTGGCCGATGGCAGTTCGGGGTCCGT CAGCTCATCCGCTGCCCAGCCGGAAGATCAATCCCAGGAGGAGGCGGAAG AGCAACAGGTCTCCTCCGCATCCAGTGGCAGTGCCGATCCGATTAGTGGC CGTCTTGTCTCTGCCGGAATTCCCGTCTCTGTGCCTCTTCCTCTGATCCT GGCCGCTCGTAATGGACTACGAACCGTATTGACCATCCAGGAGCCAGCCG TGGCCAAGGTGGGCGAGGTGGTGCAGCACGTGCCCACTGCCGTTTCGCAT CAGACCCAGACGGTGGTGCACGATCACCGCCGATTGGTCACACCCATTGT GGCACCCGCTGTTCGCACCACCCAGGTGATTCGCCAGCAGCCACCACTTC TGTGGAGCGTGGCCTCCGATCCCCGAGTGGTTCTCATCCGCAACTAAGGA TCCATTCAACAGATTAACACGATGAACTCGCCAAAGCTATGATACTTCTA TTCTTAACTCCCTTTCTGGACCTAATAACCCACAAAAAGCTTTCTCCTCT ACGTCTTCTTTCTTCTGCCATTTTCTGTAGATTTCTTCTGTAGCGTGCTT TCAATAAAGATTTCGCATTTGCATTTAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16321781..16322524 | 233..976 | 3720 | 100 | Plus |
chrX | 22417052 | chrX | 6136590..6136762 | 173..1 | 865 | 100 | Minus |
chr3L | 24539361 | chr3L | 16321683..16321722 | 194..233 | 200 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16325150..16325897 | 233..980 | 3740 | 100 | Plus |
X | 23527363 | X | 6252500..6252672 | 173..1 | 865 | 100 | Minus |
3L | 28103327 | 3L | 16325052..16325091 | 194..233 | 200 | 100 | Plus |
3L | 28103327 | 3L | 16326617..16326668 | 603..654 | 140 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ddip\Bari1 | 1677 | Ddip\Bari1 DDBARI1 1676bp Derived from Y13852. | 1504..1560 | 876..934 | 128 | 71.2 | Plus |
Ddip\Bari1 | 1677 | Ddip\Bari1 DDBARI1 1676bp Derived from Y13852. | 61..117 | 934..876 | 110 | 67.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16321683..16321722 | 194..233 | 100 | -> | Plus |
chr3L | 16321782..16322524 | 234..976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinin-RA | 1..576 | 222..797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinin-RA | 1..576 | 222..797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinin-RA | 1..576 | 222..797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinin-RA | 1..576 | 222..797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinin-RA | 1..576 | 222..797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinin-RA | 26..816 | 188..976 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinin-RA | 26..812 | 188..972 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinin-RA | 12..798 | 188..972 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinin-RA | 26..816 | 188..976 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retinin-RA | 12..798 | 188..972 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16331952..16331991 | 194..233 | 100 | -> | Plus |
3L | 16332051..16332793 | 234..976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16331952..16331991 | 194..233 | 100 | -> | Plus |
3L | 16332051..16332793 | 234..976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16331952..16331991 | 194..233 | 100 | -> | Plus |
3L | 16332051..16332793 | 234..976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16325052..16325091 | 194..233 | 100 | -> | Plus |
arm_3L | 16325151..16325893 | 234..976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16325052..16325091 | 194..233 | 100 | -> | Plus |
3L | 16325151..16325893 | 234..976 | 100 | Plus |
Translation from 221 to 796
> GH14803.pep MSRLFLPVLAIVLVSIGASHTASLEWPSNLVALSSVKSSQLLPIASEDSV ELADGSSGSVSSSAAQPEDQSQEEAEEQQVSSASSGSADPISGRLVSAGI PVSVPLPLILAARNGLRTVLTIQEPAVAKVGEVVQHVPTAVSHQTQTVVH DHRRLVTPIVAPAVRTTQVIRQQPPLLWSVASDPRVVLIRN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24187-PA | 194 | GF24187-PA | 1..194 | 1..191 | 665 | 79 | Plus |
Dana\GF24188-PA | 98 | GF24188-PA | 35..81 | 123..169 | 137 | 57.4 | Plus |
Dana\GF10298-PA | 145 | GF10298-PA | 25..85 | 107..170 | 136 | 48.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15991-PA | 191 | GG15991-PA | 1..191 | 1..191 | 757 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15881-PA | 184 | GH15881-PA | 1..184 | 1..191 | 425 | 53.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
retinin-PA | 191 | CG13057-PA | 1..191 | 1..191 | 924 | 100 | Plus |
CG13043-PA | 148 | CG13043-PA | 26..86 | 107..170 | 159 | 51.6 | Plus |
CG13063-PA | 129 | CG13063-PA | 25..85 | 107..170 | 149 | 48.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16532-PA | 183 | GI16532-PA | 1..183 | 1..191 | 510 | 58.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12009-PA | 195 | GA12009-PA | 1..195 | 1..191 | 549 | 67.9 | Plus |
Dpse\GA12008-PA | 100 | GA12008-PA | 35..88 | 123..180 | 138 | 51.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25623-PA | 191 | GM25623-PA | 1..191 | 1..191 | 767 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14627-PA | 175 | GD14627-PA | 4..175 | 20..191 | 754 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12785-PA | 179 | GJ12785-PA | 1..179 | 1..191 | 528 | 60.4 | Plus |
Translation from 221 to 796
> GH14803.hyp MSRLFLPVLAIVLVSIGASHTASLEWPSNLVALSSVKSSQLLPIASEDSV ELADGSSGSVSSSAAQPEDQSQEEAEEQQVSSASSGSADPISGRLVSAGI PVSVPLPLILAARNGLRTVLTIQEPAVAKVGEVVQHVPTAVSHQTQTVVH DHRRLVTPIVAPAVRTTQVIRQQPPLLWSVASDPRVVLIRN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
retinin-PA | 191 | CG13057-PA | 1..191 | 1..191 | 924 | 100 | Plus |
CG13043-PA | 148 | CG13043-PA | 26..86 | 107..170 | 159 | 51.6 | Plus |
CG13063-PA | 129 | CG13063-PA | 25..85 | 107..170 | 149 | 48.4 | Plus |