Clone GH14842 Report

Search the DGRC for GH14842

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:148
Well:42
Vector:pOT2
Associated Gene/TranscriptAplip1-RB
Protein status:GH14842.pep: gold
Preliminary Size:1731
Sequenced Size:1772

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1200 2001-01-01 Release 2 assignment
CG1200 2001-07-04 Blastp of sequenced clone
CG1200 2003-01-01 Sim4 clustering to Release 3
Aplip1 2008-04-29 Release 5.5 accounting
Aplip1 2008-08-15 Release 5.9 accounting
Aplip1 2008-12-18 5.12 accounting

Clone Sequence Records

GH14842.complete Sequence

1772 bp (1772 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051495

> GH14842.complete
GGGCACGCCAGCAACGTCAAGGAAATTATCGATTTTCGCATGTGAAGTGA
AAAAAGTGACTCCGTTGGCAAAAAAACTGTAGCGCGAGCAGGACTCCAGT
GAAAATCTAACCAAAAGCAGTTCACACGGACTAACTAAAAGCCCCAGCTA
GCCTGTAGTGGAGGGCGTGGCAGCTGGTCGGACCCTGGTCCCCAAACGAC
ATGGCCGACAGCGAATTCGAGGAGTTCCACAGGCCCATATTTGAGCCACA
TACGATTGCTGGATTCGGATCAGGAGCAGGCAGCAAGAAGAATAATCCAC
ATGCATTTTACTCCTTAATTCCCAACGATGACCTGGAGGACTCGCACTCC
TCGAAGAGCGATGGCGACGGTTCGGATCAGGAGGATGGCATTGGTCTTGT
GGATCACGAGCCCAAGATGCGTCAAGTGGAGGACGATGAGCTGGGCGACG
GGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCTGGACACCAACGACTCG
TTTAATTCGCACCGACATCATCCGTTGAACCACCAGGATGCGATTGGTGG
CTTCCTGGGCATGGACACCAGTGGATTGGGTGGCAATAGTGCACCTGTGA
CCATTGGAGCCAGCACAGATCTGCTGGCACCCAATACAGCTGCCACGCGA
CGTCGTCGCAAGTTGCCGGAAATACCGAAAAACAAGAAATCTTCCATTCT
GCATCTTCTAGGTGGCTCCAACTTTGGCTCCCTGGCGGATGAGTTCCGCA
ACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCGCAGTGGACAACAGCGC
TCATTTCTGTCCCTCAAATGCGGCTACTTGATGGACGAGGACTCCAGTCC
GGATTCGGAAAGGATGCAGAGTCTGGGCGACGTGGACAGTGGTCACAGCA
CGGCGCATTCGCCCAACGACTTTAAGAGCATGTCGCCGCAGATCACGTCT
CCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTTTGGGGGCGTGCCCTTTGG
CCAGCTGGAGATGCTGGAGGCCACTCACCGTGGTCTGCACAAGTTTGTGC
CGCGGCACCACGACGAGATCGAGCTGGAGATCGGCGACGCCATCTACGTG
CAAAAGGAGGCCGAGGACCTGTGGTGCGAGGGTGTGAATCTCCGCACCGG
AAGGCAGGGCATCTTCCCCTCGGCCTACGCCGTGGACCTGGACTACAACG
AGTTCGATCCCACAGTGCAGCTGGTGAAGAAGGAGCGCTATCTGCTGGGC
TACCTCGGATCCGTGGAGACGCTGGCGCACAAGGGCACCGGAGTCGTTTG
CCAGGCGGTGCGCAAGATTGTCGGGGAGTACGGCAACTCACCGACCGGAC
AGACGTGCATCCTGGAGGTTTCCGACCAGGGACTTCGCATGGTGGATCGA
TCGGGCCCGAATCAAAACAAAAAGGACAAGAAACCTTGCATCGACTACTT
CTACTCCCTGAAGAACGTCTCCTTCTGCGCATTTCACCCTCGCGATCACC
GCTTCATTGGCTTCATCACCAAACATCCCACGGTTCAGCGGTTCGCCTGC
CACGTCTTCAAGGGCTCGGAGTCGACCAGACCGGTGGCCGAGGCAGTGGG
CCGTGCTTTCCAGCGATTCTATCAGAAATTCATTGAAACCGCTTATCCCA
TCGAGGACATCTACATTGAGTAGGCTTGCAAGGCGGTTTGTGCATTAATC
AATACGATATATTTTTTGTGCGGTTATTACGAATAAAAGCAAAGATAAGT
CTCAAAAAAAAAAAAAAAAAAA

GH14842.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RB 2488 Aplip1-RB 103..1856 1..1755 8735 99.9 Plus
Aplip1-RA 2324 Aplip1-RA 713..1756 712..1755 5220 100 Plus
Aplip1-RA 2324 Aplip1-RA 24..712 1..690 3410 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1197040..1197761 691..1412 3565 99.6 Plus
chr3L 24539361 chr3L 1196469..1196844 315..690 1865 99.7 Plus
chr3L 24539361 chr3L 1195883..1196194 1..313 1470 98.7 Plus
chr3L 24539361 chr3L 1197832..1198019 1413..1600 940 100 Plus
chr3L 24539361 chr3L 1198089..1198240 1602..1753 760 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:53:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1197509..1198230 691..1412 3610 100 Plus
3L 28110227 3L 1196937..1197313 314..690 1885 100 Plus
3L 28110227 3L 1196344..1196655 1..313 1515 99.7 Plus
3L 28110227 3L 1198299..1198486 1413..1600 940 100 Plus
3L 28110227 3L 1198554..1198709 1600..1755 780 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1197509..1198230 691..1412 3610 100 Plus
3L 28103327 3L 1196937..1197313 314..690 1885 100 Plus
3L 28103327 3L 1196344..1196655 1..313 1525 99.6 Plus
3L 28103327 3L 1198299..1198486 1413..1600 940 100 Plus
3L 28103327 3L 1198554..1198709 1600..1755 780 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:49:04 has no hits.

GH14842.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:50:15 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1195883..1196194 1..313 98 -> Plus
chr3L 1196468..1196844 314..690 99 -> Plus
chr3L 1197040..1197761 691..1412 99 -> Plus
chr3L 1197832..1198019 1413..1600 100 -> Plus
chr3L 1198088..1198240 1601..1753 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:43:45 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 1..1473 201..1673 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:37 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 1..1473 201..1673 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:58:07 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 1..1473 201..1673 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:59:46 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 1..1473 201..1673 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:22 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 1..1473 201..1673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:25:40 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 24..1775 1..1753 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:37 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 24..1775 1..1753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:07 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 28..1779 1..1753 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:59:47 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 24..1775 1..1753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:22 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 28..1779 1..1753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:15 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1196344..1196655 1..313 99 -> Plus
3L 1196937..1197313 314..690 100 -> Plus
3L 1197509..1198230 691..1412 100 -> Plus
3L 1198299..1198486 1413..1600 100 -> Plus
3L 1198555..1198707 1601..1753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:15 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1196344..1196655 1..313 99 -> Plus
3L 1196937..1197313 314..690 100 -> Plus
3L 1197509..1198230 691..1412 100 -> Plus
3L 1198299..1198486 1413..1600 100 -> Plus
3L 1198555..1198707 1601..1753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:15 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1196344..1196655 1..313 99 -> Plus
3L 1196937..1197313 314..690 100 -> Plus
3L 1197509..1198230 691..1412 100 -> Plus
3L 1198299..1198486 1413..1600 100 -> Plus
3L 1198555..1198707 1601..1753 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:07 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1196344..1196655 1..313 99 -> Plus
arm_3L 1196937..1197313 314..690 100 -> Plus
arm_3L 1197509..1198230 691..1412 100 -> Plus
arm_3L 1198299..1198486 1413..1600 100 -> Plus
arm_3L 1198555..1198707 1601..1753 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:37:36 Download gff for GH14842.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1196937..1197313 314..690 100 -> Plus
3L 1196344..1196655 1..313 99 -> Plus
3L 1197509..1198230 691..1412 100 -> Plus
3L 1198299..1198486 1413..1600 100 -> Plus
3L 1198555..1198707 1601..1753 100   Plus

GH14842.pep Sequence

Translation from 200 to 1672

> GH14842.pep
MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS
SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS
FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR
RRRKLPEIPKNKKSSILHLLGGSNFGSLADEFRNGGGGGIPPAVRSGQQR
SFLSLKCGYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITS
PVSQSPFPPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYV
QKEAEDLWCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLG
YLGSVETLAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDR
SGPNQNKKDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFAC
HVFKGSESTRPVAEAVGRAFQRFYQKFIETAYPIEDIYIE*

GH14842.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24433-PA 497 GF24433-PA 1..497 1..490 2332 93.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14757-PA 490 GG14757-PA 1..490 1..490 2610 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15822-PA 482 GH15822-PA 1..482 1..490 2067 84.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-PB 490 CG1200-PB 1..490 1..490 2611 100 Plus
Aplip1-PA 483 CG1200-PA 1..483 1..490 2554 98.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12603-PA 487 GI12603-PA 1..487 1..490 2141 84.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20958-PA 466 GL20958-PA 1..466 30..490 2136 91.5 Plus
Dper\GL15754-PA 466 GL15754-PA 1..466 30..490 2125 90.8 Plus
Dper\GL19986-PA 451 GL19986-PA 1..451 45..490 2051 91.2 Plus
Dper\GL20959-PA 451 GL20959-PA 1..451 45..490 2048 91 Plus
Dper\GL20960-PA 559 GL20960-PA 97..559 27..490 2021 87.9 Plus
Dper\GL20960-PA 559 GL20960-PA 47..109 405..467 347 96.8 Plus
Dper\GL20960-PA 559 GL20960-PA 1..82 45..123 160 50.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11322-PA 489 GA11322-PA 1..489 1..490 2205 89.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14376-PA 483 GM14376-PA 1..483 1..490 2555 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12726-PA 501 GJ12726-PA 1..501 1..490 2067 79.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17331-PA 507 GK17331-PA 1..507 1..490 2017 81.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21120-PA 492 GE21120-PA 1..492 1..490 2587 98.8 Plus

GH14842.hyp Sequence

Translation from 200 to 1672

> GH14842.hyp
MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS
SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS
FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR
RRRKLPEIPKNKKSSILHLLGGSNFGSLADEFRNGGGGGIPPAVRSGQQR
SFLSLKCGYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITS
PVSQSPFPPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYV
QKEAEDLWCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLG
YLGSVETLAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDR
SGPNQNKKDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFAC
HVFKGSESTRPVAEAVGRAFQRFYQKFIETAYPIEDIYIE*

GH14842.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-PB 490 CG1200-PB 1..490 1..490 2611 100 Plus
Aplip1-PA 483 CG1200-PA 1..483 1..490 2554 98.4 Plus