Clone GH14950 Report

Search the DGRC for GH14950

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:149
Well:50
Vector:pOT2
Associated Gene/TranscriptTsp42El-RA
Protein status:GH14950.pep: gold
Preliminary Size:1034
Sequenced Size:1038

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12840 2001-01-01 Release 2 assignment
CG12840 2001-07-04 Blastp of sequenced clone
CG12840 2003-01-01 Sim4 clustering to Release 3
Tsp42El 2008-04-29 Release 5.5 accounting
Tsp42El 2008-08-15 Release 5.9 accounting
Tsp42El 2008-12-18 5.12 accounting

Clone Sequence Records

GH14950.complete Sequence

1038 bp (1038 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051496

> GH14950.complete
ACCGATTCAGTCAGGTTCCGCCGATACGGACTCAAAAACTGAAAATAATC
GGCGGCACAGCAAACTGCCGCACTTGTGGCACTGCGATTCGGTTGCATTC
TAGCCAAAGGCAAAAGTTTGAAGTGGAAAAACATTCGAAATGGGTTGCGC
AACGGGCACCATAAAGTACTCGCTGTTCCTGTTCAATGCCTTATGGGCGA
TACTCGGTATCCTGGTGCTCATCTTTGGCGGCCTTGGCTGGGGAGCAATG
CCAGATGCATATGCCATCGGCATCTTAATTCTGGGCGGTACTATCCTGGT
AATATCCCTGTTTGGATGCTGTGGAGCCGTTCGCGAATCGCCGCGCATGC
TCTGGACGTATGCGTCACTGCTGCTGATTTTGCTGCTACTTATAGTGGCG
TTTATCATCCTGAATCCCAAAGATGTATTTAAAAAGTACGCGCTTCAAAC
GGTGGAGAATCAGTGGGAGCTGGAGCAGACGAAGCCTGGCAGTATGGATA
TTATTCAGAAAACGTACTATTGCTGTGGCCGCGACAGTGCCCAAGACTAC
TTGGATATCAAATTCTGGAACAATACCGTTCCAAGTAGCTGTTGCAAGGA
CGACAGCTGTGTGAATCCACTGAATCTATATGTGCGCGGCTGCCTCATCA
AAGTGGAGGAGGCTTTTGCAGATGAGGCAACCACTCTGGGCTATTTGGAG
TGGGGTCTGCTCGGATTCAACGCTGTCATTCTATTGCTGGCCATCATCTT
GGCCATTCACTACACCAACCGGCGGAGACGATATAACTATTAGTGAATAT
TTACTGAATAAGAAACCAAACTCCTCAAATCTAAGTGTCATCAGTGTATG
GTTTGTTTTTGATACGAAAACCCAGCGTTACTTGCCAAGCAACTGAGTTA
ATCTTTTTATTAAAGCAATGTTTAACACATTCGAATATTAAAATAATATG
TACATAACTACAAGTACCAAACACATGTCGTTTAAAATACCAAATATATT
TAGAAAAATTACTTTCAAAAAAAAAAAAAAAAAAAAAA

GH14950.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-RA 1136 Tsp42El-RA 110..1127 1..1018 5090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2935648..2935942 722..1016 1445 99.3 Plus
chr2R 21145070 chr2R 2935376..2935584 514..722 1045 100 Plus
chr2R 21145070 chr2R 2933220..2933418 1..199 995 100 Plus
chr2R 21145070 chr2R 2934681..2934840 199..358 785 99.4 Plus
chr2R 21145070 chr2R 2934905..2935061 358..514 785 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:53:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7048244..7048540 722..1018 1485 100 Plus
2R 25286936 2R 7047972..7048180 514..722 1045 100 Plus
2R 25286936 2R 7045815..7046013 1..199 995 100 Plus
2R 25286936 2R 7047276..7047435 199..358 800 100 Plus
2R 25286936 2R 7047500..7047656 358..514 785 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7049443..7049739 722..1018 1485 100 Plus
2R 25260384 2R 7049171..7049379 514..722 1045 100 Plus
2R 25260384 2R 7047014..7047212 1..199 995 100 Plus
2R 25260384 2R 7048475..7048634 199..358 800 100 Plus
2R 25260384 2R 7048699..7048855 358..514 785 100 Plus
Blast to na_te.dros performed 2019-03-15 16:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dhyd\Minos 1773 Dhyd\Minos DHMINOS 1773bp Derived from Z29098. 49..128 915..1000 125 70.1 Plus
Dhyd\Minos 1773 Dhyd\Minos DHMINOS 1773bp Derived from Z29098. 1646..1725 1000..915 125 70.1 Minus

GH14950.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:55:31 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2933220..2933418 1..199 100 -> Plus
chr2R 2934682..2934840 200..358 99 -> Plus
chr2R 2934906..2935061 359..514 100 -> Plus
chr2R 2935377..2935583 515..721 100 -> Plus
chr2R 2935648..2935942 722..1016 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:43:54 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 1..654 140..793 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:26 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 1..654 140..793 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:24:18 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 1..654 140..793 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:59:34 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 1..654 140..793 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:54 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 1..654 140..793 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:25:23 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 43..1058 1..1016 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:26 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 43..1058 1..1016 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:24:18 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 47..1062 1..1016 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:59:34 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 43..1058 1..1016 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:54 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 47..1062 1..1016 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:55:31 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7047277..7047435 200..358 100 -> Plus
2R 7047501..7047656 359..514 100 -> Plus
2R 7047973..7048179 515..721 100 -> Plus
2R 7045815..7046013 1..199 100 -> Plus
2R 7048244..7048538 722..1016 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:55:31 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7047277..7047435 200..358 100 -> Plus
2R 7047501..7047656 359..514 100 -> Plus
2R 7047973..7048179 515..721 100 -> Plus
2R 7045815..7046013 1..199 100 -> Plus
2R 7048244..7048538 722..1016 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:55:31 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7047277..7047435 200..358 100 -> Plus
2R 7047501..7047656 359..514 100 -> Plus
2R 7047973..7048179 515..721 100 -> Plus
2R 7045815..7046013 1..199 100 -> Plus
2R 7048244..7048538 722..1016 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:24:18 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2935749..2936043 722..1016 100   Plus
arm_2R 2933320..2933518 1..199 100 -> Plus
arm_2R 2934782..2934940 200..358 100 -> Plus
arm_2R 2935006..2935161 359..514 100 -> Plus
arm_2R 2935478..2935684 515..721 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:37:23 Download gff for GH14950.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7049172..7049378 515..721 100 -> Plus
2R 7049443..7049737 722..1016 100   Plus
2R 7047014..7047212 1..199 100 -> Plus
2R 7048476..7048634 200..358 100 -> Plus
2R 7048700..7048855 359..514 100 -> Plus

GH14950.hyp Sequence

Translation from 139 to 792

> GH14950.hyp
MGCATGTIKYSLFLFNALWAILGILVLIFGGLGWGAMPDAYAIGILILGG
TILVISLFGCCGAVRESPRMLWTYASLLLILLLLIVAFIILNPKDVFKKY
ALQTVENQWELEQTKPGSMDIIQKTYYCCGRDSAQDYLDIKFWNNTVPSS
CCKDDSCVNPLNLYVRGCLIKVEEAFADEATTLGYLEWGLLGFNAVILLL
AIILAIHYTNRRRRYNY*

GH14950.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-PA 217 CG12840-PA 1..217 1..217 1150 100 Plus
Tsp42Ee-PB 228 CG10106-PB 1..228 1..217 330 36.1 Plus
Tsp42Ee-PA 228 CG10106-PA 1..228 1..217 330 36.1 Plus
Tsp42Ek-PB 215 CG12841-PB 1..215 1..217 301 33.3 Plus
Tsp42Ek-PA 215 CG12841-PA 1..215 1..217 301 33.3 Plus

GH14950.pep Sequence

Translation from 139 to 792

> GH14950.pep
MGCATGTIKYSLFLFNALWAILGILVLIFGGLGWGAMPDAYAIGILILGG
TILVISLFGCCGAVRESPRMLWTYASLLLILLLLIVAFIILNPKDVFKKY
ALQTVENQWELEQTKPGSMDIIQKTYYCCGRDSAQDYLDIKFWNNTVPSS
CCKDDSCVNPLNLYVRGCLIKVEEAFADEATTLGYLEWGLLGFNAVILLL
AIILAIHYTNRRRRYNY*

GH14950.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12689-PA 217 GF12689-PA 1..217 1..217 877 81.1 Plus
Dana\GF12682-PA 227 GF12682-PA 1..227 1..217 325 35.8 Plus
Dana\GF13154-PA 226 GF13154-PA 1..226 1..217 294 34.3 Plus
Dana\GF12688-PA 215 GF12688-PA 1..215 1..217 286 30.1 Plus
Dana\GF12681-PA 228 GF12681-PA 1..228 1..217 267 30.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23251-PA 217 GG23251-PA 1..217 1..217 977 88 Plus
Dere\GG23249-PA 215 GG23249-PA 1..215 1..217 297 34.2 Plus
Dere\GG10779-PA 227 GG10779-PA 1..227 1..217 271 31.3 Plus
Dere\GG23243-PA 228 GG23243-PA 1..228 1..217 267 35.3 Plus
Dere\GG23252-PA 208 GG23252-PA 1..208 1..217 252 31.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21507-PA 217 GH21507-PA 1..217 1..217 770 72.4 Plus
Dgri\GH21512-PA 218 GH21512-PA 1..218 1..217 322 37.5 Plus
Dgri\GH21499-PA 230 GH21499-PA 1..230 1..217 306 34.3 Plus
Dgri\GH21506-PA 217 GH21506-PA 1..215 1..217 293 32.9 Plus
Dgri\GH21494-PA 226 GH21494-PA 1..226 1..217 291 33.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-PA 217 CG12840-PA 1..217 1..217 1150 100 Plus
Tsp42Ee-PB 228 CG10106-PB 1..228 1..217 330 36.1 Plus
Tsp42Ee-PA 228 CG10106-PA 1..228 1..217 330 36.1 Plus
Tsp42Ek-PB 215 CG12841-PB 1..215 1..217 301 33.3 Plus
Tsp42Ek-PA 215 CG12841-PA 1..215 1..217 301 33.3 Plus
Tsp42Ea-PC 226 CG18817-PC 1..226 1..217 291 33.5 Plus
Tsp42Ea-PB 226 CG18817-PB 1..226 1..217 291 33.5 Plus
Tsp42Ea-PA 226 CG18817-PA 1..226 1..217 291 33.5 Plus
Tsp42Ed-PB 227 CG12846-PB 1..227 1..217 265 30.5 Plus
Tsp42Ed-PA 227 CG12846-PA 1..227 1..217 265 30.5 Plus
lbm-PB 208 CG2374-PB 1..208 1..217 257 32 Plus
lbm-PA 208 CG2374-PA 1..208 1..217 257 32 Plus
Tsp42Eq-PA 219 CG12832-PA 1..218 1..217 245 27.5 Plus
Tsp42Eh-PB 231 CG12844-PB 1..229 1..217 242 26.3 Plus
Tsp42Ei-PB 229 CG12843-PB 1..225 1..216 239 28.1 Plus
Tsp42Ei-PA 229 CG12843-PA 1..225 1..216 239 28.1 Plus
Tsp42Ec-PA 232 CG12847-PA 1..214 1..201 237 29.5 Plus
Tsp42Er-PA 211 CG12837-PA 1..211 1..217 208 27.3 Plus
CG30160-PA 222 CG30160-PA 1..216 1..205 208 28.3 Plus
Tsp42Eb-PB 222 CG18816-PB 1..216 1..205 208 28.3 Plus
Tsp47F-PB 239 CG9033-PB 4..235 3..214 208 30.5 Plus
Tsp42Eo-PA 219 CG12838-PA 8..219 8..217 196 26.9 Plus
Tsp42Ef-PA 220 CG12845-PA 3..217 4..214 186 23.4 Plus
Tsp42En-PB 218 CG12839-PB 1..218 1..217 183 26.1 Plus
Tsp42En-PA 218 CG12839-PA 1..218 1..217 183 26.1 Plus
Tsp39D-PB 235 CG8666-PB 9..234 8..217 176 25.9 Plus
Tsp42Eg-PA 218 CG12142-PA 1..215 1..217 171 28.6 Plus
Tsp42Ep-PB 250 CG4471-PB 3..218 2..214 167 29.6 Plus
Tsp42Ep-PA 250 CG4471-PA 3..218 2..214 167 29.6 Plus
Tsp29Fa-PC 248 CG9494-PC 7..171 4..152 166 29.6 Plus
Tsp29Fa-PB 248 CG9494-PB 7..171 4..152 166 29.6 Plus
Tsp29Fa-PA 248 CG9494-PA 7..171 4..152 166 29.6 Plus
Tsp5D-PB 283 CG4690-PB 50..265 35..217 147 24.9 Plus
Tsp5D-PA 283 CG4690-PA 50..265 35..217 147 24.9 Plus
Tsp5D-PC 287 CG4690-PC 50..265 35..217 147 24.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19476-PA 217 GI19476-PA 1..217 1..217 758 74.2 Plus
Dmoj\GI19469-PA 231 GI19469-PA 1..231 1..217 338 36.1 Plus
Dmoj\GI19481-PA 220 GI19481-PA 1..220 1..217 308 32.1 Plus
Dmoj\GI19475-PA 217 GI19475-PA 1..215 1..217 299 30.6 Plus
Dmoj\GI19464-PA 226 GI19464-PA 1..226 1..217 293 33.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11146-PA 217 GL11146-PA 1..217 1..217 951 82.9 Plus
Dper\GL11133-PA 226 GL11133-PA 1..226 1..217 305 35.2 Plus
Dper\GL11145-PA 215 GL11145-PA 1..215 1..217 299 33.3 Plus
Dper\GL11138-PA 252 GL11138-PA 1..252 1..217 286 33.1 Plus
Dper\GL11142-PA 228 GL11142-PA 1..224 1..216 271 31.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11846-PA 217 GA11846-PA 1..217 1..217 956 83.4 Plus
Dpse\GA10076-PA 228 GA10076-PA 1..228 1..217 322 36.5 Plus
Dpse\GA15095-PA 226 GA15095-PA 1..226 1..217 305 35.2 Plus
Dpse\GA11847-PA 215 GA11847-PA 1..215 1..217 297 32.9 Plus
Dpse\GA24622-PA 228 GA24622-PA 1..224 1..216 271 31.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20924-PA 217 GM20924-PA 1..217 1..217 1025 95.9 Plus
Dsec\GM16190-PA 228 GM16190-PA 1..228 1..217 286 37 Plus
Dsec\GM18744-PA 228 GM18744-PA 1..228 1..217 286 37 Plus
Dsec\GM20915-PA 228 GM20915-PA 1..228 1..217 285 36.5 Plus
Dsec\GM20925-PA 208 GM20925-PA 1..208 1..217 263 32.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10452-PA 217 GD10452-PA 1..217 1..217 1105 96.8 Plus
Dsim\GD10451-PA 215 GD10451-PA 1..215 1..217 286 33.6 Plus
Dsim\GD10444-PA 228 GD10444-PA 1..228 1..217 284 36.5 Plus
Dsim\GD10280-PA 227 GD10280-PA 1..227 1..217 262 30.5 Plus
Dsim\GD10276-PA 219 GD10276-PA 1..218 1..217 250 28.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15137-PA 217 GJ15137-PA 1..217 1..217 800 74.2 Plus
Dvir\GJ15136-PA 217 GJ15136-PA 1..215 1..217 320 32.4 Plus
Dvir\GJ15128-PA 230 GJ15128-PA 1..230 1..217 305 36.5 Plus
Dvir\GJ15124-PA 226 GJ15124-PA 1..226 1..217 294 34.3 Plus
Dvir\GJ15138-PA 208 GJ15138-PA 1..208 1..217 274 30.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21783-PA 217 GK21783-PA 1..217 1..217 928 77.9 Plus
Dwil\GK21787-PA 215 GK21787-PA 1..215 1..217 304 33.5 Plus
Dwil\GK21776-PA 228 GK21776-PA 1..228 1..217 297 34.3 Plus
Dwil\GK21782-PA 216 GK21782-PA 1..216 1..217 294 32 Plus
Dwil\GK21771-PA 226 GK21771-PA 1..226 1..217 288 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19101-PA 217 GE19101-PA 1..217 1..217 992 94.5 Plus
Dyak\GE19100-PA 215 GE19100-PA 1..215 1..217 284 33.3 Plus
Dyak\Tsp42Ee-PA 228 GE19093-PA 1..228 1..217 267 34.8 Plus
Dyak\Tsp42Ed-PA 227 GE24279-PA 1..227 1..217 263 30.9 Plus
Dyak\GE19102-PA 208 GE19102-PA 1..208 1..217 258 32.1 Plus