Clone GH15213 Report

Search the DGRC for GH15213

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:152
Well:13
Vector:pOT2
Associated Gene/TranscriptCG12065-RC
Protein status:GH15213.pep: gold
Preliminary Size:2790
Sequenced Size:2630

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12065 2001-01-01 Release 2 assignment
CG12065 2002-06-07 Blastp of sequenced clone
CG12065 2008-04-29 Release 5.5 accounting
CG12065 2008-08-15 Release 5.9 accounting
CG12065 2008-12-18 5.12 accounting

Clone Sequence Records

GH15213.complete Sequence

2630 bp (2630 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119523

> GH15213.complete
GACTTTGAAAAGGGTTTCCATCCATCAACATCTATCCCCGTGTTTTCATT
TTGTTTTTGCCGGCATTTTGGCTAGTGGAATAAACGAAGCAAACCAGCAA
GGAAAACATAAAACAAATTAAGCAAATAATAGTGACCGAAAAGGGAGAAC
CGGTTGCAAATCAAGTGGCAAATAAAACACGTCATTTGTTCGTTTGTTTG
ATCCAGCAACAGCACCAGCAGCAGCAAGTTTGGGCTCAAGGACGTCGCCG
GAGCAGCGGTATCGTATCGGATCGAAGGAGCAGCAGTTCCAGCACCAAGG
AACAGGAGGAGCAAGGCGGAGCAACTAGCACCAGCACCATGTCGGAGCGC
AGGAGTCACATACAGATGGCGCCGCCACCGCCGCCCCCCAAGCCAAACAA
ATCGCAGACAGCCAATGGAAATGGTATTGGGAACGGCACAGGCATAGGAA
CGGGCACTGGCAACGGAACCCTGCCGAATGGCAATAAAAACTATAACAAA
ATTGTCGCAGTCCAAGACCAGGAGCCGCTGGCTCAGAACTCGAGCGGCGT
TCAAAGGAGCCAGTCGCCACCACGCACAGAACAGGTTGTGATGACGCCAC
GCGGTAAAACGGCCAACAGTACGGTGATCCTCATCGAACGCAAACTGGTC
GATGAGATCAATGATCGCGTTCATGTCGCCGGCGGTGATCATACGGGCAT
CATCATTAACAAGGACACGGTCGCCGGACAGAAGAGCGCCAGCAAGGCGG
CAGCGCTATCGCTGGAATTCCGCGTCTTTCTGGTCAGCGCCAATACGGGC
AAGCATTCGCAGGAGTCGCGCACCCTGCGCTTCTGGTTCCGCGACTGGCT
GACCAACGAGGAGAAGCAGGCGCACATAGCCCAGGACTTCTTCAAGGAGC
TGGTCAGTCCGCAGGACTTTCCCAGAGACTACGTGGGCTTCATCAAGAAG
ATAATGAAGCTCCTGCAGCACGGATACTCGGAGATCCAGTCGATCGAGAT
TGAGCTGCGCATCCTGGAGGAGACATCCGCACCACCCTCGCGACCACTTT
CGCTCGAGGAATCGCAGTTCGAATCACCGCCGTTGACTCAGGAGAAGGTG
CTGGAGCTCATCGAGCAGGCATATCCCAATCCCGTGTCCCCCGAGGATCT
GGCCAAGGATTACGGCTGGAGCGAGCAGGATGTGCTGCTGGTGATCAAGT
CACTGCAGGAGCGCGGTCTGATCAAGTCGATGGAGTACAATGCGTACACT
CGCATCCATCACGAGGACAAGGAGATTAAGGTGGTCAAGCAGATGCCCAC
GATCGCCTCCAACAAGCAGCCCACCATTGCCATCATCACGGCGCAATATT
GCGAGAAGCTCGCCGTGGACGCAATGCTCGAGAACAAGGAGACATTCGTC
CGATACACCACAGTCGGCGAATCGAATGTGTATACTCTGGGCAATATCGG
GGCGCACAGGATCGTGAGCACCAAGCTCCCGTCGGTGGGCAGCAATCGGG
AGGCGATGACGGCGACGGGCAATACCACAACCCGTCTGTTGGGCACATTC
CAAAAGGTCGACTATGTTTTCATCGTGGGCGTAGCCGGTGGCGTTCCCCA
CTACACGGACTATAAGAAGCACGTGCGACTGGGCGATGTGGTCATCTCGT
ATGTGGACAAACAGCGGGCACTGATCAGCAATAGCAAGGAGAAACCGTAC
GTGTACTTGTACAAGAGCGGCGAGGACGTGAAGACCTACTTCCCGGTGAA
CGATTCGCTGCAGCAGATCGCCGAGAGCCTGCAGGCCAACATGCAGGTGA
AGCGGCCGTGGGAGGACTACCTGAACCAGGCCCAACAGGCGTTGGCCCAG
AAGACGGATGCCGACTTCAACCGGCCGGACGCGCGGACGGACAAACTGTT
TATGAACATTGGAAATAACGAGGTGATCGAGGTGGCCCATCCCATTGCCG
CCGACGAGGTGGACGGTGTCAATCGGTTGCGACTCCATCTGGGTCCCATT
GGATCCGGAAGGGATCTGGTGAGGAGCGACGAGCTGCGCACCCAGTTCGC
CAGGAAGTACGGCCTACTGGCCACCGATGTGGAGATGAGCAGCGTGCTGG
ACAGCATCATTGGCAATTGCAGAGAGAGCTTTATACTGGTGAAGGGCATC
GCTGACTACAAGGACGGCACGTCCACCAGGAAGTGGCAAAACTTCGCTGC
CATTTCGGCGGCGTCGGTGGTTAAGTCGGTTATCTGCGGCATGGACGCGC
CCACGAATGTATAGGAGGCGGGGCTTCGAATACCCCATTTCCTCCATTAC
ACCCCAACCCCCCCGCCCACCCCTTCCCTGCAATCGTAGCATTTGATTTG
CCTCCAATTTTCGTACCAATCCCGCTGCGGCGTCCCTTTATTTTTTTGTG
GCCAGACACATGGGGACCACTATTCGTAAACCAAAATGTGCATAGATTGC
ATCATATATAATGTATGTTCGCGTAATATTGTATTAAATGATTTCTTGTT
ATTTATTTTGTTATAACTTTTGTACTACAATCAATCTAATTTACACACAA
ACACTTGACGTATATAAAAACACATATATACAACAGTAAATAAATATCGC
AACTAAGCTTGCAAAAAAAAAAAAAAAAAA

GH15213.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12065-RC 2713 CG12065-RC 48..2664 1..2617 13085 100 Plus
CG12065-RF 2674 CG12065-RF 47..2666 1..2617 13030 99.8 Plus
CG12065-RA 2816 CG12065-RA 1605..2808 1414..2617 6020 100 Plus
CG12065-RA 2816 CG12065-RA 54..1100 1..1047 5235 100 Plus
CG12065-RA 2816 CG12065-RA 1182..1550 1048..1416 1845 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8479343..8480272 1683..2612 4650 100 Plus
chrX 22417052 chrX 8475283..8476012 210..927 3390 97.9 Plus
chrX 22417052 chrX 8479014..8479282 1416..1684 1345 100 Plus
chrX 22417052 chrX 8477743..8478003 1157..1417 1305 100 Plus
chrX 22417052 chrX 8467096..8467235 73..212 700 100 Plus
chrX 22417052 chrX 8476211..8476332 926..1047 610 100 Plus
chrX 22417052 chrX 8477567..8477676 1048..1157 550 100 Plus
chrX 22417052 chrX 8466084..8466155 1..72 345 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:53:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8587586..8588520 1683..2617 4675 100 Plus
X 23542271 X 8583538..8584255 210..927 3590 100 Plus
X 23542271 X 8587257..8587525 1416..1684 1345 100 Plus
X 23542271 X 8585986..8586246 1157..1417 1305 100 Plus
X 23542271 X 8575351..8575490 73..212 700 100 Plus
X 23542271 X 8584454..8584575 926..1047 610 100 Plus
X 23542271 X 8585810..8585919 1048..1157 550 100 Plus
X 23542271 X 8574336..8574407 1..72 360 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8595684..8596618 1683..2617 4675 100 Plus
X 23527363 X 8591636..8592353 210..927 3590 100 Plus
X 23527363 X 8595355..8595623 1416..1684 1345 100 Plus
X 23527363 X 8594084..8594344 1157..1417 1305 100 Plus
X 23527363 X 8583449..8583588 73..212 700 100 Plus
X 23527363 X 8592552..8592673 926..1047 610 100 Plus
X 23527363 X 8593908..8594017 1048..1157 550 100 Plus
X 23527363 X 8582434..8582505 1..72 360 100 Plus
Blast to na_te.dros performed 2019-03-15 21:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6889 203..365 134 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6785..6915 204..339 134 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6764..7086 204..535 133 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..7012 204..406 133 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6870 204..339 129 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2441..2640 200..412 125 58.3 Plus
Stalker4 7359 Stalker4 STALKER4 7359bp 1901..1972 2538..2609 125 67.1 Plus
Stalker 7256 Stalker STALKER 7256bp 1822..1866 2564..2609 119 76.1 Plus

GH15213.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:37:23 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8466084..8466155 1..72 98 -> Plus
chrX 8467096..8467235 73..212 100 -> Plus
chrX 8475286..8476012 213..927 97 -> Plus
chrX 8476213..8476332 928..1047 100 -> Plus
chrX 8477567..8477675 1048..1156 100 -> Plus
chrX 8477743..8478002 1157..1416 100 -> Plus
chrX 8479015..8479282 1417..1684 100 -> Plus
chrX 8479345..8480272 1685..2612 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:33:41 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RC 1..1926 339..2264 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:28:43 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RC 1..1926 339..2264 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:53:32 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RD 1..1926 339..2264 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:19:02 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RC 1..1926 339..2264 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:28 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RD 1..1926 339..2264 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:40 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RC 1..2612 1..2612 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:28:42 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RC 33..2644 1..2612 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:53:32 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RC 33..2644 1..2612 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:19:02 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RC 1..2612 1..2612 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:28 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RC 31..2642 1..2612 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:23 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
X 8574336..8574407 1..72 100 -> Plus
X 8575351..8575490 73..212 100 -> Plus
X 8583541..8584255 213..927 100 -> Plus
X 8584456..8584575 928..1047 100 -> Plus
X 8585810..8585918 1048..1156 100 -> Plus
X 8585986..8586245 1157..1416 100 -> Plus
X 8587258..8587525 1417..1684 100 -> Plus
X 8587588..8588515 1685..2612 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:23 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
X 8574336..8574407 1..72 100 -> Plus
X 8575351..8575490 73..212 100 -> Plus
X 8583541..8584255 213..927 100 -> Plus
X 8584456..8584575 928..1047 100 -> Plus
X 8585810..8585918 1048..1156 100 -> Plus
X 8585986..8586245 1157..1416 100 -> Plus
X 8587258..8587525 1417..1684 100 -> Plus
X 8587588..8588515 1685..2612 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:23 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
X 8574336..8574407 1..72 100 -> Plus
X 8575351..8575490 73..212 100 -> Plus
X 8583541..8584255 213..927 100 -> Plus
X 8584456..8584575 928..1047 100 -> Plus
X 8585810..8585918 1048..1156 100 -> Plus
X 8585986..8586245 1157..1416 100 -> Plus
X 8587258..8587525 1417..1684 100 -> Plus
X 8587588..8588515 1685..2612 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:53:32 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8468369..8468440 1..72 100 -> Plus
arm_X 8469384..8469523 73..212 100 -> Plus
arm_X 8477574..8478288 213..927 100 -> Plus
arm_X 8478489..8478608 928..1047 100 -> Plus
arm_X 8479843..8479951 1048..1156 100 -> Plus
arm_X 8480019..8480278 1157..1416 100 -> Plus
arm_X 8481291..8481558 1417..1684 100 -> Plus
arm_X 8481621..8482548 1685..2612 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:52:34 Download gff for GH15213.complete
Subject Subject Range Query Range Percent Splice Strand
X 8591639..8592353 213..927 100 -> Plus
X 8592554..8592673 928..1047 100 -> Plus
X 8593908..8594016 1048..1156 100 -> Plus
X 8594084..8594343 1157..1416 100 -> Plus
X 8595356..8595623 1417..1684 100 -> Plus
X 8595686..8596613 1685..2612 100   Plus
X 8582434..8582505 1..72 100 -> Plus
X 8583449..8583588 73..212 100 -> Plus

GH15213.pep Sequence

Translation from 338 to 2263

> GH15213.pep
MSERRSHIQMAPPPPPPKPNKSQTANGNGIGNGTGIGTGTGNGTLPNGNK
NYNKIVAVQDQEPLAQNSSGVQRSQSPPRTEQVVMTPRGKTANSTVILIE
RKLVDEINDRVHVAGGDHTGIIINKDTVAGQKSASKAAALSLEFRVFLVS
ANTGKHSQESRTLRFWFRDWLTNEEKQAHIAQDFFKELVSPQDFPRDYVG
FIKKIMKLLQHGYSEIQSIEIELRILEETSAPPSRPLSLEESQFESPPLT
QEKVLELIEQAYPNPVSPEDLAKDYGWSEQDVLLVIKSLQERGLIKSMEY
NAYTRIHHEDKEIKVVKQMPTIASNKQPTIAIITAQYCEKLAVDAMLENK
ETFVRYTTVGESNVYTLGNIGAHRIVSTKLPSVGSNREAMTATGNTTTRL
LGTFQKVDYVFIVGVAGGVPHYTDYKKHVRLGDVVISYVDKQRALISNSK
EKPYVYLYKSGEDVKTYFPVNDSLQQIAESLQANMQVKRPWEDYLNQAQQ
ALAQKTDADFNRPDARTDKLFMNIGNNEVIEVAHPIAADEVDGVNRLRLH
LGPIGSGRDLVRSDELRTQFARKYGLLATDVEMSSVLDSIIGNCRESFIL
VKGIADYKDGTSTRKWQNFAAISAASVVKSVICGMDAPTNV*

GH15213.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21835-PA 699 GF21835-PA 1..699 1..641 2964 84.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18262-PA 687 GG18262-PA 1..687 1..641 3341 92.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12787-PA 683 GH12787-PA 1..683 1..641 2867 81.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12065-PF 641 CG12065-PF 1..641 1..641 3290 100 Plus
CG12065-PE 641 CG12065-PE 1..641 1..641 3290 100 Plus
CG12065-PD 641 CG12065-PD 1..641 1..641 3290 100 Plus
CG12065-PC 641 CG12065-PC 1..641 1..641 3290 100 Plus
CG12065-PB 687 CG12065-PB 1..687 1..641 3219 93.2 Plus
CG12065-PA 687 CG12065-PA 1..687 1..641 3219 93.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15229-PA 714 GI15229-PA 1..714 1..641 2818 77.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20347-PA 692 GL20347-PA 1..692 1..641 2787 79.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11369-PA 695 GA11369-PA 73..695 65..641 2888 87.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21702-PA 435 GM21702-PA 244..435 450..641 1038 100 Plus
Dsec\GM21702-PA 435 GM21702-PA 1..120 1..120 623 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16908-PA 687 GD16908-PA 1..687 1..641 3334 92.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18688-PA 704 GJ18688-PA 77..704 59..641 2871 86.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19925-PA 704 GK19925-PA 1..704 1..641 2844 81.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15793-PA 742 GE15793-PA 50..742 1..641 3322 91.5 Plus

GH15213.hyp Sequence

Translation from 338 to 2263

> GH15213.hyp
MSERRSHIQMAPPPPPPKPNKSQTANGNGIGNGTGIGTGTGNGTLPNGNK
NYNKIVAVQDQEPLAQNSSGVQRSQSPPRTEQVVMTPRGKTANSTVILIE
RKLVDEINDRVHVAGGDHTGIIINKDTVAGQKSASKAAALSLEFRVFLVS
ANTGKHSQESRTLRFWFRDWLTNEEKQAHIAQDFFKELVSPQDFPRDYVG
FIKKIMKLLQHGYSEIQSIEIELRILEETSAPPSRPLSLEESQFESPPLT
QEKVLELIEQAYPNPVSPEDLAKDYGWSEQDVLLVIKSLQERGLIKSMEY
NAYTRIHHEDKEIKVVKQMPTIASNKQPTIAIITAQYCEKLAVDAMLENK
ETFVRYTTVGESNVYTLGNIGAHRIVSTKLPSVGSNREAMTATGNTTTRL
LGTFQKVDYVFIVGVAGGVPHYTDYKKHVRLGDVVISYVDKQRALISNSK
EKPYVYLYKSGEDVKTYFPVNDSLQQIAESLQANMQVKRPWEDYLNQAQQ
ALAQKTDADFNRPDARTDKLFMNIGNNEVIEVAHPIAADEVDGVNRLRLH
LGPIGSGRDLVRSDELRTQFARKYGLLATDVEMSSVLDSIIGNCRESFIL
VKGIADYKDGTSTRKWQNFAAISAASVVKSVICGMDAPTNV*

GH15213.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12065-PF 641 CG12065-PF 1..641 1..641 3290 100 Plus
CG12065-PE 641 CG12065-PE 1..641 1..641 3290 100 Plus
CG12065-PD 641 CG12065-PD 1..641 1..641 3290 100 Plus
CG12065-PC 641 CG12065-PC 1..641 1..641 3290 100 Plus
CG12065-PB 687 CG12065-PB 1..687 1..641 3219 93.2 Plus