Clone GH15220 Report

Search the DGRC for GH15220

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:152
Well:20
Vector:pOT2
Associated Gene/TranscriptCG4842-RA
Protein status:GH15220.pep: gold
Preliminary Size:918
Sequenced Size:961

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4842 2002-01-01 Sim4 clustering to Release 2
CG4842 2002-05-18 Blastp of sequenced clone
CG4842 2003-01-01 Sim4 clustering to Release 3
CG4842 2008-04-29 Release 5.5 accounting
CG4842 2008-08-15 Release 5.9 accounting
CG4842 2008-12-18 5.12 accounting

Clone Sequence Records

GH15220.complete Sequence

961 bp (961 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118787

> GH15220.complete
CTGACTGAACTACACGAAGTCCAAAGAGCCAATAGTTTCACCACAGCGAC
ATGGACTTAGCCGGCAAAAATGTCGTTTACCTTGGCGGATTCGGTGGAAT
AGGCCAAAAATGTGTGCAAGAACTGCTCCAGCGACCAATAAAGGCTCTAG
CCATTTTCGATCTAAATGCTAATGAGCAGCTCTTGGCTAAGTGGAAAAGC
CAGCATCCCGATACGGACGTCTTCTACCACAAGCTGGACATAACCCAGAA
ATCGGATATAGACGCGGCCTACAAGGCGACCGCCGAGAGATTCGGACACT
TCGATGTGGTGGTCAATGGCAGTGGACTGATGAACGATCGCCTGGTCGAA
CTCACTATTCAAATTAATCTGCTGGGAGTTATCAACAGCACTTTGACCGC
CTTGGAGTACATGGACAAGGCCAAAGGCGGAAAGGGTGGGCTCATAGTGA
ATATATCATCGGTGGCTGGACTGCAGCCCACAGCTATAATGGCCATTTAC
TCGGCGGCCAAGACGGGAGTTACCACATTCACCAGAGCCATGGCTAACCC
CTACTTTTACGCCCACTCTGGTGTAGGCTTCCTTACCATCTGTCCCGGAT
TCACGGACACTGGGCTACTGGAGGATATTGGCAACAAGACGACATTCACC
TACGACACTCCCATGCTGGCCATGTTCAACCGGGTGAAGCGTCAGAAGGC
CGAGGATTGTGCGAGGAACCTGGTCTCAGCAATAGAGACGTCCAAAAATG
GAACTGTCCTCATGCTGGAGATGGGTGAGACGACGGAGGTGGACATGCCA
GTCATGTGGAAGCCACAGTTGGATAATTAATACCGCATTATTGTTTCTAT
TATGTGCGCATCATATTGTAATCTCTTTCAATTCCTTGGTGATTTAAAAT
AAAAGTGTTGTAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

GH15220.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-RA 1027 CG4842-RA 73..990 1..918 4590 100 Plus
CG18814.a 1044 CG18814.a 184..651 180..647 960 80.3 Plus
CG18814-RA 1014 CG18814-RA 425..699 373..647 490 78.5 Plus
CG18814-RA 1014 CG18814-RA 178..369 180..371 480 83.3 Plus
CG18814-RA 1014 CG18814-RA 64..155 66..157 235 83.6 Plus
CG18814.a 1044 CG18814.a 70..161 66..157 235 83.6 Plus
CG18814-RA 1014 CG18814-RA 712..835 657..780 140 74.1 Plus
CG18814.a 1044 CG18814.a 664..787 657..780 140 74.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16358893..16359263 546..916 1765 98.4 Plus
chr3L 24539361 chr3L 16358351..16358580 142..371 1150 100 Plus
chr3L 24539361 chr3L 16358649..16358820 371..542 845 99.4 Plus
chr3L 24539361 chr3L 16358152..16358295 1..144 720 100 Plus
chr3L 24539361 chr3L 16359802..16359993 180..371 480 83.3 Plus
chr3L 24539361 chr3L 16360049..16360221 373..545 385 81.5 Plus
chr3L 24539361 chr3L 16359633..16359694 66..127 220 90.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:53:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16369148..16369520 546..918 1865 100 Plus
3L 28110227 3L 16368606..16368835 142..371 1150 100 Plus
3L 28110227 3L 16368904..16369078 371..545 875 100 Plus
3L 28110227 3L 16368407..16368550 1..144 720 100 Plus
3L 28110227 3L 16370060..16370251 180..371 480 83.3 Plus
3L 28110227 3L 16370307..16370479 373..545 385 81.5 Plus
3L 28110227 3L 16369891..16369952 66..127 220 90.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16362248..16362620 546..918 1865 100 Plus
3L 28103327 3L 16361706..16361935 142..371 1150 100 Plus
3L 28103327 3L 16362004..16362178 371..545 875 100 Plus
3L 28103327 3L 16361507..16361650 1..144 720 100 Plus
3L 28103327 3L 16363160..16363351 180..371 480 83.3 Plus
3L 28103327 3L 16363407..16363579 373..545 385 81.5 Plus
3L 28103327 3L 16362991..16363052 66..127 220 90.3 Plus
3L 28103327 3L 16363749..16363872 657..780 140 74.1 Plus
3L 28103327 3L 16363646..16363736 557..647 140 76.9 Plus
Blast to na_te.dros performed on 2019-03-16 01:25:24 has no hits.

GH15220.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:26:21 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16358152..16358294 1..143 100 -> Plus
chr3L 16358353..16358580 144..371 100 -> Plus
chr3L 16358650..16358823 372..545 98 -> Plus
chr3L 16358893..16359263 546..916 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:44:15 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 1..780 51..830 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:46:20 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 1..780 51..830 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:17 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 1..780 51..830 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:38:36 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 1..780 51..830 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:33:56 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 1..780 51..830 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:21:56 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 1..916 1..916 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:46:20 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 1..916 1..916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:17 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 19..934 1..916 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:38:36 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 1..916 1..916 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:33:56 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 19..934 1..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:26:21 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16368407..16368549 1..143 100 -> Plus
3L 16368608..16368835 144..371 100 -> Plus
3L 16368905..16369078 372..545 100 -> Plus
3L 16369148..16369518 546..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:26:21 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16368407..16368549 1..143 100 -> Plus
3L 16368608..16368835 144..371 100 -> Plus
3L 16368905..16369078 372..545 100 -> Plus
3L 16369148..16369518 546..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:26:21 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16368407..16368549 1..143 100 -> Plus
3L 16368608..16368835 144..371 100 -> Plus
3L 16368905..16369078 372..545 100 -> Plus
3L 16369148..16369518 546..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:17 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16361507..16361649 1..143 100 -> Plus
arm_3L 16361708..16361935 144..371 100 -> Plus
arm_3L 16362005..16362178 372..545 100 -> Plus
arm_3L 16362248..16362618 546..916 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:10:59 Download gff for GH15220.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16361708..16361935 144..371 100 -> Plus
3L 16362005..16362178 372..545 100 -> Plus
3L 16362248..16362618 546..916 100   Plus
3L 16361507..16361649 1..143 100 -> Plus

GH15220.pep Sequence

Translation from 50 to 829

> GH15220.pep
MDLAGKNVVYLGGFGGIGQKCVQELLQRPIKALAIFDLNANEQLLAKWKS
QHPDTDVFYHKLDITQKSDIDAAYKATAERFGHFDVVVNGSGLMNDRLVE
LTIQINLLGVINSTLTALEYMDKAKGGKGGLIVNISSVAGLQPTAIMAIY
SAAKTGVTTFTRAMANPYFYAHSGVGFLTICPGFTDTGLLEDIGNKTTFT
YDTPMLAMFNRVKRQKAEDCARNLVSAIETSKNGTVLMLEMGETTEVDMP
VMWKPQLDN*

GH15220.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10118-PA 259 GF10118-PA 1..258 1..258 1150 82.6 Plus
Dana\GF24389-PA 261 GF24389-PA 1..254 1..253 509 39.8 Plus
Dana\Adhr-PA 272 GF14889-PA 3..253 2..253 379 32.4 Plus
Dana\GF12913-PA 372 GF12913-PA 123..368 5..253 356 32.8 Plus
Dana\Adh-PA 256 GF14888-PA 3..252 1..253 341 31.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16001-PA 259 GG16001-PA 1..259 1..259 1293 91.9 Plus
Dere\GG13462-PA 261 GG13462-PA 1..254 1..253 504 39 Plus
Dere\GG25347-PA 256 GG25347-PA 3..255 2..254 493 37.8 Plus
Dere\Adhr-PA 272 GG25121-PA 3..253 2..253 400 33.6 Plus
Dere\Adh-PA 256 GG25120-PA 5..252 3..253 338 31.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15889-PA 261 GH15889-PA 1..257 1..257 942 66.1 Plus
Dgri\GH15599-PA 261 GH15599-PA 1..254 1..253 506 39 Plus
Dgri\GH13326-PA 257 GH13326-PA 3..256 2..254 471 35.8 Plus
Dgri\GH13404-PA 274 GH13404-PA 3..254 2..254 396 32.7 Plus
Dgri\Adh-PA 254 GH13025-PA 1..250 1..253 326 29 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-PA 259 CG4842-PA 1..259 1..259 1335 100 Plus
CG18814-PB 267 CG18814-PB 1..260 1..259 1031 75 Plus
Pdh-PC 261 CG4899-PC 1..254 1..253 501 39 Plus
Pdh-PA 278 CG4899-PA 18..271 1..253 501 39 Plus
Pdh-PD 260 CG4899-PD 1..253 1..253 495 39.4 Plus
Pdh-PB 277 CG4899-PB 18..270 1..253 495 39.4 Plus
Fbp2-PC 256 CG3763-PC 3..255 2..254 494 36 Plus
Fbp2-PB 256 CG3763-PB 3..255 2..254 494 36 Plus
Fbp2-PA 256 CG3763-PA 3..255 2..254 494 36 Plus
Adhr-PC 272 CG3484-PC 3..253 2..253 406 34.4 Plus
Adhr-PB 272 CG3484-PB 3..253 2..253 406 34.4 Plus
Adhr-PA 272 CG3484-PA 3..253 2..253 406 34.4 Plus
Adh-PE 256 CG3481-PE 5..252 3..253 342 31.7 Plus
Adh-PF 256 CG3481-PF 5..252 3..253 342 31.7 Plus
Adh-PH 256 CG3481-PH 5..252 3..253 342 31.7 Plus
Adh-PI 256 CG3481-PI 5..252 3..253 342 31.7 Plus
Adh-PC 256 CG3481-PC 5..252 3..253 342 31.7 Plus
CG3699-PA 251 CG3699-PA 1..191 1..194 181 31.7 Plus
CG31548-PA 256 CG31548-PA 1..191 1..189 150 28.8 Plus
CG9360-PA 251 CG9360-PA 10..236 9..233 146 25.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16540-PA 257 GI16540-PA 1..257 1..259 903 64.5 Plus
Dmoj\GI16877-PA 261 GI16877-PA 1..254 1..253 507 38.6 Plus
Dmoj\GI17665-PA 258 GI17665-PA 3..257 2..254 460 35.7 Plus
Dmoj\GI17645-PA 276 GI17645-PA 3..253 2..253 402 33.6 Plus
Dmoj\Adh2-PA 254 GI17643-PA 1..254 1..257 331 28.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17859-PA 258 GL17859-PA 1..258 1..258 1110 77.5 Plus
Dper\GL26147-PA 256 GL26147-PA 3..255 2..254 466 37.4 Plus
Dper\GL18003-PA 184 GL18003-PA 1..180 1..182 362 40.1 Plus
Dper\Adh-PA 254 GL25993-PA 1..252 1..259 357 32.7 Plus
Dper\Adhr-PA 267 GL25994-PA 3..242 2..253 337 30.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18471-PA 258 GA18471-PA 1..258 1..258 1115 77.5 Plus
Dpse\GA18512-PA 261 GA18512-PA 1..253 1..256 509 39.7 Plus
Dpse\GA17670-PA 256 GA17670-PA 3..255 2..254 467 37.4 Plus
Dpse\Adhr-PA 278 GA25223-PA 3..253 2..253 387 32.8 Plus
Dpse\Adh-PA 254 GA17214-PA 1..252 1..259 358 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25632-PA 259 GM25632-PA 1..259 1..259 1339 95.8 Plus
Dsec\GM25633-PA 267 GM25633-PA 1..260 1..259 1031 73.5 Plus
Dsec\GM24411-PA 261 GM24411-PA 1..254 1..253 503 38.6 Plus
Dsec\GM17449-PA 256 GM17449-PA 3..255 2..254 495 37.4 Plus
Dsec\Adhr-PA 272 GM15667-PA 3..253 2..253 408 34 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14635-PA 259 GD14635-PA 1..259 1..259 1336 95 Plus
Dsim\GD14637-PA 164 GD14637-PA 5..157 108..259 591 72.5 Plus
Dsim\GD12481-PA 261 GD12481-PA 1..254 1..253 510 39.4 Plus
Dsim\Fbp2-PA 256 GD23602-PA 3..255 2..254 495 37 Plus
Dsim\Adhr-PA 272 GD23969-PA 3..253 2..253 408 34 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12792-PA 259 GJ12792-PA 1..259 1..259 914 65.6 Plus
Dvir\GJ12626-PA 261 GJ12626-PA 1..254 1..253 498 38.2 Plus
Dvir\GJ17861-PA 257 GJ17861-PA 3..256 2..254 481 37 Plus
Dvir\Adhr-PA 275 GJ18210-PA 3..253 2..253 397 33.6 Plus
Dvir\Adh1-PA 254 GJ18208-PA 1..254 1..257 341 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14485-PA 260 GK14485-PA 1..259 1..258 1044 73.4 Plus
Dwil\GK17292-PA 259 GK17292-PA 1..259 1..259 839 60.2 Plus
Dwil\GK17293-PA 259 GK17293-PA 1..257 1..257 773 55.6 Plus
Dwil\GK20840-PA 260 GK20840-PA 1..254 1..253 504 39 Plus
Dwil\GK24204-PA 256 GK24204-PA 3..255 2..254 487 36.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23092-PA 259 GE23092-PA 1..259 1..259 1279 91.5 Plus
Dyak\GE23094-PA 259 GE23094-PA 1..259 1..259 1279 91.5 Plus
Dyak\GE23095-PA 260 GE23095-PA 1..260 1..259 1020 71.2 Plus
Dyak\GE23093-PA 260 GE23093-PA 1..260 1..259 1018 71.5 Plus
Dyak\Pdh-PA 261 GE22908-PA 1..254 1..253 507 39 Plus

GH15220.hyp Sequence

Translation from 50 to 829

> GH15220.hyp
MDLAGKNVVYLGGFGGIGQKCVQELLQRPIKALAIFDLNANEQLLAKWKS
QHPDTDVFYHKLDITQKSDIDAAYKATAERFGHFDVVVNGSGLMNDRLVE
LTIQINLLGVINSTLTALEYMDKAKGGKGGLIVNISSVAGLQPTAIMAIY
SAAKTGVTTFTRAMANPYFYAHSGVGFLTICPGFTDTGLLEDIGNKTTFT
YDTPMLAMFNRVKRQKAEDCARNLVSAIETSKNGTVLMLEMGETTEVDMP
VMWKPQLDN*

GH15220.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-PA 259 CG4842-PA 1..259 1..259 1335 100 Plus
CG18814-PB 267 CG18814-PB 1..260 1..259 1031 75 Plus
Pdh-PC 261 CG4899-PC 1..254 1..253 501 39 Plus
Pdh-PA 278 CG4899-PA 18..271 1..253 501 39 Plus
Pdh-PD 260 CG4899-PD 1..253 1..253 495 39.4 Plus