Clone GH15248 Report

Search the DGRC for GH15248

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:152
Well:48
Vector:pOT2
Associated Gene/TranscriptDiap1-RA
Protein status:GH15248.pep: gold
Sequenced Size:1870

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
th 2008-04-29 Release 5.5 accounting
th 2008-04-29 Picked prior to 5.5
th 2008-08-15 Release 5.9 accounting
th 2008-12-18 5.12 accounting

Clone Sequence Records

GH15248.complete Sequence

1870 bp assembled on 2007-11-15

GenBank Submission: BT031197.1

> GH15248.complete
GCATTCAAACCCACCAGTCGACGTGAGCACAGTTGTGTAAACATTTTATA
CAGCAAAACTTATTTTAAGTGATTTTATAATCTTATCGTGGTGCGATAAG
AGGTGAACGAAAACAATTAACGATTTGGTGGCCGAAAAAAGGCATTAAAA
AAACCAATGATAAACTGATACGTTATCACTGTTTAAAATGTCTCTGTTTC
GACTTCAGAGGAAAGGAGCCAGAGAAGAAATTAAGAGTCAGGCAAACAAA
GGAGCTAACAACCAGAACACAAAATGGCATCTGTTGTAGCTGATCTTCCG
TCTTATGGACCTATCGCTTTTGATCAGGTGGATAACAACACGAACGCGAC
CCAGCTATTCAAAAATAATATAAACAAAACCAGAATGAACGATTTAAACC
GCGAGGAGACGCGATTAAAGACCTTCACCGACTGGCCGCTGGACTGGCTG
GATAAACGCCAATTGGCCCAAACCGGCATGTACTTCACACACGCCGGCGA
CAAAGTTAAATGCTTTTTCTGCGGCGTGGAAATCGGTTGCTGGGAGCAGG
AGGATCAGCCCGTGCCGGAACATCAGCGATGGTCGCCCAACTGTCCACTG
TTGCGCCGGCGCACTACCAACAATGTGCCGATCAATGCCGAAGCATTAGA
TCGCATCCTGCCGCCAATAAGCTACGATATCTGCGGCGCCAACGACTCGA
CGCTGGAGATGAGGGAGCATGCCTACGCAGAAGGCGTCATACCCATGTCG
CAGCTAATTCAGTCGATTGGCATGAATGCAGTAAATGCGGCAGGCAGTGT
AACTGGAACCGCAGCCCCGCAGCCGAGGGTAACGGTCGCCACCCATGCGT
CGACGGCGACACAGGCCACTGGCGATGTCCAGCCGGAGACGTGTCGTCCT
TCAGCCGCCAGTGGCAATTATTTTCCCCAGTATCCCGAATACGCCATCGA
GACGGCACGCCTGCGCACCTTCGAGGCTTGGCCGAGGAACCTGAAACAGA
AGCCCCACCAGCTGGCCGAGGCGGGTTTCTTCTATACAGGCGTTGGGGAT
CGCGTCCGCTGCTTCAGTTGCGGCGGTGGTCTCATGGATTGGAACGACAA
CGACGAGCCCTGGGAACAGCACGCTCTCTGGCTAAGTCAGTGCCGATTCG
TCAAGCTGATGAAGGGTCAGCTCTATATCGATACGGTGGCCGCCAAACCA
GTGCTGGCCGAGGAGAAGGAGGAGAGCTCTTCGATTGGAGGGGTCGCGGT
GGCCAGCACACAGGCTTCAGAGGAAGAGCAGCAGACATCACTCTCATCGG
AGGAGGCCGTTTCGGGGGATGTGGCTCCGTCCGTAGCTCCCACGGCAGCC
ACACGCATCTTCAACAAGATCGTCGAGGCGACAGCGGTGGCTACTCCCTC
GACAAACAGCAGCGGCTCCACCTCCATACCCGAGGAAAAGTTGTGCAAGA
TCTGCTACGGCGCCGAGTACAATACGGCATTCCTGCCATGCGGTCATGTG
GTGGCCTGCGCCAAGTGCGCCTCCTCTGTGACAAAGTGTCCGCTGTGCCG
GAAGCCCTTCACCGATGTGATGCGCGTATATTTTTCTTAATAACCCCAAT
GCGCACCCAAGTCCTCAAATTCAAAATAAACATGTCTAAAAAGAAAATGT
GGGCGGAATGTGTTAATTATAAGCGTAGAAAAAAATCGTGGTTCAACAGG
CGATCGCAACGGCCAGCTGTGGGGATGCCCGGCAGCTGGCCGTTGGACTT
TAGAAGATCACAAAGCCTGCCAGTTATCGTAAGCCTACATTGTAATATTA
GTTTAGTACAGCACTTCTATGCGTTATTTATAATAAAACTAATATATTAC
CGAAAAAAAAAAAAAAAAAA

GH15248.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
th-RB 2313 th-RB 382..2237 1..1856 9280 100 Plus
th-RC 1983 th-RC 245..1907 194..1856 8315 100 Plus
th-RA 2215 th-RA 479..2139 196..1856 8305 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16028160..16029816 1852..196 8225 99.8 Minus
chr3L 24539361 chr3L 16040201..16040396 196..1 950 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:53:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16038406..16040066 1856..196 8305 100 Minus
3L 28110227 3L 16050458..16050653 196..1 980 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16031506..16033166 1856..196 8305 100 Minus
3L 28103327 3L 16043558..16043753 196..1 980 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:33:48 has no hits.

GH15248.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:34:29 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16028160..16029815 197..1852 99 <- Minus
chr3L 16040201..16040396 1..196 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:44:39 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
th-RA 1..1317 274..1590 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:02:00 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
th-RC 1..1317 274..1590 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:48:57 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
th-RD 1..1317 274..1590 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:47:23 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
th-RA 1..1317 274..1590 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:49:30 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
Diap1-RD 1..1317 274..1590 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:38 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
th-RB 3..1854 1..1852 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:02:00 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
th-RB 3..1854 1..1852 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:48:57 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
th-RB 19..1870 1..1852 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:47:23 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
th-RB 3..1854 1..1852 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:49:30 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
Diap1-RB 19..1870 1..1852 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:29 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16038410..16040065 197..1852 100 <- Minus
3L 16050458..16050653 1..196 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:29 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16038410..16040065 197..1852 100 <- Minus
3L 16050458..16050653 1..196 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:29 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16038410..16040065 197..1852 100 <- Minus
3L 16050458..16050653 1..196 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:48:57 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16031510..16033165 197..1852 100 <- Minus
arm_3L 16043558..16043753 1..196 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:53:56 Download gff for GH15248.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16031510..16033165 197..1852 100 <- Minus
3L 16043558..16043753 1..196 100   Minus

GH15248.pep Sequence

Translation from 273 to 1589

> GH15248.pep
MASVVADLPSYGPIAFDQVDNNTNATQLFKNNINKTRMNDLNREETRLKT
FTDWPLDWLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGCWEQEDQPVPEH
QRWSPNCPLLRRRTTNNVPINAEALDRILPPISYDICGANDSTLEMREHA
YAEGVIPMSQLIQSIGMNAVNAAGSVTGTAAPQPRVTVATHASTATQATG
DVQPETCRPSAASGNYFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEA
GFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVKLMKGQL
YIDTVAAKPVLAEEKEESSSIGGVAVASTQASEEEQQTSLSSEEAVSGDV
APSVAPTAATRIFNKIVEATAVATPSTNSSGSTSIPEEKLCKICYGAEYN
TAFLPCGHVVACAKCASSVTKCPLCRKPFTDVMRVYFS*

GH15248.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10661-PA 444 GF10661-PA 1..444 1..438 1677 73.2 Plus
Dana\GF13337-PA 497 GF13337-PA 6..497 41..438 382 27.1 Plus
Dana\GF17464-PA 5004 GF17464-PA 254..363 41..141 171 35.5 Plus
Dana\GF18137-PA 149 GF18137-PA 21..98 223..295 144 38.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13502-PA 400 GG13502-PA 1..400 38..438 1787 86.8 Plus
Dere\GG22322-PA 497 GG22322-PA 6..497 41..438 387 28 Plus
Dere\GG17289-PA 4877 GG17289-PA 245..354 41..141 169 35.5 Plus
Dere\GG22322-PA 497 GG22322-PA 109..180 40..111 154 40.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15404-PA 449 GH15404-PA 33..449 15..438 1169 54.3 Plus
Dgri\GH20962-PA 502 GH20962-PA 211..299 217..305 221 43.8 Plus
Dgri\GH20962-PA 502 GH20962-PA 7..190 41..295 179 27 Plus
Dgri\GH20962-PA 502 GH20962-PA 221..284 45..107 173 45.3 Plus
Dgri\GH18453-PA 4852 GH18453-PA 245..354 41..141 168 35.5 Plus
Dgri\GH20962-PA 502 GH20962-PA 100..186 19..108 159 38.9 Plus
Dgri\GH20962-PA 502 GH20962-PA 433..502 376..438 154 40 Plus
Dgri\GH13432-PA 141 GH13432-PA 14..91 223..295 152 38.5 Plus
Dgri\GH21423-PA 505 GH21423-PA 359..413 383..437 151 49.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
Diap1-PF 438 CG12284-PF 1..438 1..438 2335 100 Plus
Diap1-PE 438 CG12284-PE 1..438 1..438 2335 100 Plus
Diap1-PD 438 CG12284-PD 1..438 1..438 2335 100 Plus
Diap1-PC 438 CG12284-PC 1..438 1..438 2335 100 Plus
Diap1-PA 438 CG12284-PA 1..438 1..438 2335 100 Plus
Diap1-PB 438 CG12284-PB 1..438 1..438 2335 100 Plus
Diap2-PB 498 CG8293-PB 9..498 44..438 403 28.6 Plus
Diap2-PA 498 CG8293-PA 9..498 44..438 403 28.6 Plus
Bruce-PC 4852 CG6303-PC 245..354 41..141 169 35.5 Plus
Bruce-PE 4865 CG6303-PE 245..354 41..141 169 35.5 Plus
Bruce-PD 4875 CG6303-PD 245..354 41..141 169 35.5 Plus
Bruce-PA 4876 CG6303-PA 245..354 41..141 169 35.5 Plus
Bruce-PB 4976 CG6303-PB 245..354 41..141 169 35.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13007-PA 443 GI13007-PA 20..443 15..438 1290 59.5 Plus
Dmoj\GI21299-PA 500 GI21299-PA 214..500 218..438 319 30.3 Plus
Dmoj\GI24031-PA 551 GI24031-PA 245..330 41..120 167 38.4 Plus
Dmoj\GI21299-PA 500 GI21299-PA 223..289 45..110 164 40.3 Plus
Dmoj\GI21299-PA 500 GI21299-PA 120..191 40..111 155 40.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25100-PA 243 GL25100-PA 4..243 204..438 837 67.5 Plus
Dper\GL16260-PA 493 GL16260-PA 207..295 218..306 238 46.1 Plus
Dper\GL16260-PA 493 GL16260-PA 216..279 45..107 172 42.2 Plus
Dper\GL23835-PA 4950 GL23835-PA 241..350 41..141 168 34.5 Plus
Dper\GL16260-PA 493 GL16260-PA 391..493 341..438 162 35.8 Plus
Dper\GL16260-PA 493 GL16260-PA 112..183 40..111 161 41.7 Plus
Dper\GL25100-PA 243 GL25100-PA 25..93 44..111 151 37.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11532-PA 439 GA11532-PA 12..439 11..438 1522 66.6 Plus
Dpse\GA20963-PA 493 GA20963-PA 207..295 218..306 237 46.1 Plus
Dpse\GA20963-PA 493 GA20963-PA 216..279 45..107 172 42.2 Plus
Dpse\Bruce-PA 4956 GA19502-PA 241..350 41..141 169 34.5 Plus
Dpse\GA20963-PA 493 GA20963-PA 391..493 341..438 162 35.8 Plus
Dpse\GA20963-PA 493 GA20963-PA 112..183 40..111 161 41.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24450-PA 435 GM24450-PA 1..435 1..438 2228 94.1 Plus
Dsec\GM20110-PA 498 GM20110-PA 6..498 41..438 406 28.2 Plus
Dsec\GM16262-PA 341 GM16262-PA 37..158 29..141 172 33.6 Plus
Dsec\GM26173-PA 3066 GM26173-PA 245..354 41..141 168 35.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12518-PA 430 GD12518-PA 1..430 1..438 2199 93.4 Plus
Dsim\GD25587-PA 498 GD25587-PA 6..498 41..438 407 28.2 Plus
Dsim\GD20723-PA 4013 GD20723-PA 801..910 41..141 171 35.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12099-PA 456 GJ12099-PA 30..456 16..438 1268 57.2 Plus
Dvir\GJ20901-PA 491 GJ20901-PA 212..300 217..305 239 47.2 Plus
Dvir\GJ20901-PA 491 GJ20901-PA 222..288 45..110 173 41.8 Plus
Dvir\GJ23660-PA 1826 GJ23660-PA 245..330 41..120 167 38.4 Plus
Dvir\GJ20901-PA 491 GJ20901-PA 119..190 40..111 155 40.3 Plus
Dvir\GJ20901-PA 491 GJ20901-PA 118..191 221..295 152 40 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23971-PA 457 GK23971-PA 25..457 17..438 1398 63.3 Plus
Dwil\GK21897-PA 491 GK21897-PA 214..490 218..437 332 30.6 Plus
Dwil\GK14416-PA 4911 GK14416-PA 250..336 41..121 168 37.9 Plus
Dwil\GK21897-PA 491 GK21897-PA 223..289 45..110 166 41.8 Plus
Dwil\GK21897-PA 491 GK21897-PA 119..190 40..111 151 40.3 Plus
Dwil\GK11633-PA 151 GK11633-PA 21..100 221..295 143 40 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23121-PA 444 GE23121-PA 1..444 1..438 1964 87.2 Plus
Dyak\GE22287-PA 444 GE22287-PA 1..444 1..438 1948 87.4 Plus
Dyak\Iap2-PA 497 GE14118-PA 6..293 41..307 310 33.1 Plus
Dyak\Iap2-PA 497 GE14118-PA 406..497 350..438 169 35.9 Plus
Dyak\GE24690-PA 4970 GE24690-PA 245..354 41..141 169 35.5 Plus
Dyak\Iap2-PA 497 GE14118-PA 109..180 40..111 154 40.3 Plus

GH15248.hyp Sequence

Translation from 509 to 1850

> GH15248.hyp
MLFLRRGNRLLGAGGSARAGTSAMVAQLSTVAPAHYQQCADQCRSIRSHP
AANKLRYLRRQRLDAGDEGACLRRRRHTHVAANSVDWHECSKCGRQCNWN
RSPAAEGNGRHPCVDGDTGHWRCPAGDVSSFSRQWQLFSPVSRIRHRDGT
PAHLRGLAEEPETEAPPAGRGGFLLYRRWGSRPLLQLRRWSHGLERQRRA
LGTARSLAKSVPIRQADEGSALYRYGGRQTSAGRGEGGELFDWRGRGGQH
TGFRGRAADITLIGGGRFGGCGSVRSSHGSHTHLQQDRRGDSGGYSLDKQ
QRLHLHTRGKVVQDLLRRRVQYGIPAMRSCGGLRQVRLLCDKVSAVPEAL
HRCDARIFFLITPMRTQVLKFKINMSKKKMWAECVNYKRRKKSWFNRRSQ
RPAVGMPGSWPLDFRRSQSLPVIVSLHCNISLVQHFYALFIIKLIYY
Sequence GH15248.hyp has no blast hits.