BDGP Sequence Production Resources |
Search the DGRC for GH15296
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 152 |
Well: | 96 |
Vector: | pOT2 |
Associated Gene/Transcript | Scp1-RA |
Protein status: | GH15296.pep: gold |
Preliminary Size: | 1122 |
Sequenced Size: | 1009 |
Gene | Date | Evidence |
---|---|---|
CG15848 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15848 | 2002-05-15 | Blastp of sequenced clone |
CG15848 | 2003-01-01 | Sim4 clustering to Release 3 |
Scp1 | 2008-04-29 | Release 5.5 accounting |
Scp1 | 2008-08-15 | Release 5.9 accounting |
Scp1 | 2008-12-18 | 5.12 accounting |
1009 bp (1009 high quality bases) assembled on 2002-05-15
GenBank Submission: AY118788
> GH15296.complete CCGAAGCTATTTACATTTTATGAGGATAAGCTCCAAACAAATTCCGTCAT AATGGCTTATTCCTGGGATAACCGTGTCGATTTTGTCGTTCGGTATATGT ATGATATCGACAACAATGGATTTCTGGACCAAAATGATTTTCTGTGCATG GCAGTAAGAGCATGTGTCGTAGAAGGAAAAGGTGATTGCAGCACTGCTCG ATTGGATGATTATAAAAAGCTAATGAAAAATTTATGGGATGAAATCTCTG CTATTGCTGACGACGATAAGGATGGCAAAATATCCAATCAAGAATTTAAG GATGCTGTAAAAAAAACATGTGTGGGTAAAAAGTACGAAGAATTTCCACA GGCAATGAGAGCATTCATTGAATCAAACTTCAAGCTTCTTGACATAGACA GCGATGGAATAGTCGGAGTTAAAGAATACCGTTATAACTGTATAACTAGA GTAGCCATCGACGATATTACTCCAATTGATAAAGCCTTTGAAACATTGTT GAATGACGAGGACCGGAAACGTGGCGGTCTTTCCCTAGATCGCTATAAGG AACTGTATGGTCAATTTTTGGGAAACACAGCCGATAATCATCCAGCAGTA AATCTCTTTGGGCCCTTATAAACATATTTTACAATTAATTGTCTTCGCTG TTGTTCAACAACTATTTATTAAGTTTTATTTGTAATTACTATGACTTTAA ATTTATTACCGTATAGAAATAATACATTCATATCATTTTGTGTAGAATCG TCAGATGAGTTCGTCAGTTCGTTATTTTTAATGCTTTATAATACGTTAAG TACAATTGCTCTCAGAAGATAATAATAGGATATAGAGTTGGCGTTCTCTC TTAAAAGGGCTCTTCTGTTAAAACCTCTCTCTCAATACAGAGTTGATTTC GATTAAATGTTGTGTTATATTAATGTTACCATAATGTAAACTATTTAATA AAATGCCTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2RHet | 3288813 | chr2RHet | 1707872..1708329 | 962..505 | 2290 | 100 | Minus |
chr2RHet | 3288813 | chr2RHet | 1738099..1738267 | 271..103 | 845 | 100 | Minus |
chr2RHet | 3288813 | chr2RHet | 1712715..1712870 | 505..350 | 780 | 100 | Minus |
chr2RHet | 3288813 | chr2RHet | 1631041..1631196 | 505..350 | 750 | 98.7 | Minus |
chr2RHet | 3288813 | chr2RHet | 1628322..1628454 | 506..374 | 620 | 97.7 | Minus |
chr2RHet | 3288813 | chr2RHet | 1742139..1742237 | 103..5 | 495 | 100 | Minus |
chr2RHet | 3288813 | chr2RHet | 1730040..1730123 | 352..269 | 420 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 2932823..2933284 | 966..505 | 2310 | 100 | Minus |
2R | 25286936 | 2R | 2963055..2963223 | 271..103 | 845 | 100 | Minus |
2R | 25286936 | 2R | 2937670..2937825 | 505..350 | 780 | 100 | Minus |
2R | 25286936 | 2R | 2856001..2856156 | 505..350 | 750 | 98.7 | Minus |
2R | 25286936 | 2R | 2853283..2853415 | 506..374 | 620 | 97.7 | Minus |
2R | 25286936 | 2R | 2967095..2967193 | 103..5 | 495 | 100 | Minus |
2R | 25286936 | 2R | 2954996..2955079 | 352..269 | 420 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 2932823..2933284 | 966..505 | 2310 | 100 | Minus |
2R | 25260384 | 2R | 2963055..2963223 | 271..103 | 845 | 100 | Minus |
2R | 25260384 | 2R | 2937670..2937825 | 505..350 | 780 | 100 | Minus |
2R | 25260384 | 2R | 2856001..2856156 | 505..350 | 750 | 98.7 | Minus |
2R | 25260384 | 2R | 2853283..2853415 | 506..374 | 620 | 97.7 | Minus |
2R | 25260384 | 2R | 2967095..2967193 | 103..5 | 495 | 100 | Minus |
2R | 25260384 | 2R | 2954996..2955079 | 352..269 | 420 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
P-element | 2907 | P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). | 2636..2717 | 741..660 | 139 | 66.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2RHet | 1707872..1708329 | 505..962 | 100 | <- | Minus |
chr2RHet | 1712716..1712868 | 352..504 | 100 | <- | Minus |
chr2RHet | 1730041..1730121 | 271..351 | 100 | <- | Minus |
chr2RHet | 1738100..1738255 | 115..270 | 100 | <- | Minus |
chr2RHet | 1742126..1742237 | 1..114 | 91 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp1-RA | 1..570 | 52..621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp1-RA | 1..570 | 52..621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp1-RA | 1..570 | 52..621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp1-RA | 1..570 | 52..621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp1-RA | 1..570 | 52..621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp1-RA | 23..984 | 1..962 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp1-RA | 23..984 | 1..962 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp1-RA | 23..984 | 1..962 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp1-RA | 23..984 | 1..962 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp1-RA | 23..984 | 1..962 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 2954997..2955077 | 271..351 | 100 | <- | Minus |
2R | 2963056..2963222 | 104..270 | 100 | <- | Minus |
2R | 2967095..2967193 | 1..103 | 96 | Minus | |
2R | 2932827..2933284 | 505..962 | 100 | <- | Minus |
2R | 2937671..2937823 | 352..504 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 2954997..2955077 | 271..351 | 100 | <- | Minus |
2R | 2963056..2963222 | 104..270 | 100 | <- | Minus |
2R | 2967095..2967193 | 1..103 | 96 | Minus | |
2R | 2932827..2933284 | 505..962 | 100 | <- | Minus |
2R | 2937671..2937823 | 352..504 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 2954997..2955077 | 271..351 | 100 | <- | Minus |
2R | 2963056..2963222 | 104..270 | 100 | <- | Minus |
2R | 2967095..2967193 | 1..103 | 96 | Minus | |
2R | 2932827..2933284 | 505..962 | 100 | <- | Minus |
2R | 2937671..2937823 | 352..504 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2RHet | 1712640..1712792 | 352..504 | 100 | <- | Minus |
2RHet | 1729966..1730046 | 271..351 | 100 | <- | Minus |
2RHet | 1738025..1738191 | 104..270 | 100 | <- | Minus |
2RHet | 1742064..1742162 | 1..103 | 96 | Minus | |
2RHet | 1707796..1708253 | 505..962 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 2932827..2933284 | 505..962 | 100 | <- | Minus |
2R | 2937671..2937823 | 352..504 | 100 | <- | Minus |
2R | 2954997..2955077 | 271..351 | 100 | <- | Minus |
2R | 2963056..2963222 | 104..270 | 100 | <- | Minus |
2R | 2967095..2967193 | 1..103 | 96 | Minus |
Translation from 6 to 620
> GH15296.hyp LFTFYEDKLQTNSVIMAYSWDNRVDFVVRYMYDIDNNGFLDQNDFLCMAV RACVVEGKGDCSTARLDDYKKLMKNLWDEISAIADDDKDGKISNQEFKDA VKKTCVGKKYEEFPQAMRAFIESNFKLLDIDSDGIVGVKEYRYNCITRVA IDDITPIDKAFETLLNDEDRKRGGLSLDRYKELYGQFLGNTADNHPAVNL FGPL*
Translation from 51 to 620
> GH15296.pep MAYSWDNRVDFVVRYMYDIDNNGFLDQNDFLCMAVRACVVEGKGDCSTAR LDDYKKLMKNLWDEISAIADDDKDGKISNQEFKDAVKKTCVGKKYEEFPQ AMRAFIESNFKLLDIDSDGIVGVKEYRYNCITRVAIDDITPIDKAFETLL NDEDRKRGGLSLDRYKELYGQFLGNTADNHPAVNLFGPL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14448-PA | 291 | GF14448-PA | 121..291 | 19..189 | 895 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23100-PA | 189 | GG23100-PA | 1..189 | 1..189 | 988 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13373-PA | 189 | GH13373-PA | 1..189 | 1..189 | 945 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scp1-PB | 189 | CG15848-PB | 1..189 | 1..189 | 1007 | 100 | Plus |
Scp1-PA | 189 | CG15848-PA | 1..189 | 1..189 | 1007 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18277-PA | 226 | GI18277-PA | 109..226 | 72..189 | 592 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24797-PA | 130 | GL24797-PA | 1..124 | 1..124 | 636 | 97.6 | Plus |
Dper\GL25464-PA | 65 | GL25464-PA | 1..50 | 102..151 | 254 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17530-PA | 757 | GJ17530-PA | 641..757 | 73..189 | 588 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21213-PA | 104 | GK21213-PA | 15..104 | 100..189 | 458 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Scp1-PA | 189 | GE22673-PA | 1..189 | 1..189 | 988 | 98.9 | Plus |