Clone GH15448 Report

Search the DGRC for GH15448

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:154
Well:48
Vector:pOT2
Associated Gene/Transcriptbonsai-RA
Protein status:GH15448.pep: gold
Preliminary Size:1128
Sequenced Size:987

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4207 2001-01-01 Release 2 assignment
CG4207 2003-01-01 Sim4 clustering to Release 3
CG4207 2003-01-13 Blastp of sequenced clone
bonsai 2008-04-29 Release 5.5 accounting
bonsai 2008-08-15 Release 5.9 accounting
bonsai 2008-12-18 5.12 accounting

Clone Sequence Records

GH15448.complete Sequence

987 bp (987 high quality bases) assembled on 2003-01-13

GenBank Submission: AY060712

> GH15448.complete
GCCAAGTGATATAACCTAGCCAAAATTTGTCCAACAAATAAAAGCCGAAT
TAATGAATAAACTGTTGAATATAGCCCAGGCAGGGCATCGGCAGTTTGTC
CGGGAATATGCATTCAAGTCGGACCTGAAAATCAAATGGATGCGCCCCGA
GAAGATCGCGTGCTATAAGCCCGAAAAGAGCGGCGATTTAGCCAAGCTGC
CTCCTCTGAAAGCCGACGAACTGCTGCCGGAATACAGGGACTGCAAGGAG
TTGGATAAAGCCGACGAGTCAGTTAAATCCTTGTTCAAACTGAGCAACAA
CGCTAGTTACCTGACCACAAAATTCTATCGCGATGAGATGGTCAAGGAGG
TGCAAAGACATGCCCAGGATTTCGGCTCAATGGAGGCCAAATTGGCAAAA
ATGACTGCAGTTATCCGCCGCTACCAGGAGCACATGGACAAGCATCCGCG
CGACAAGATGATCAAGGTGCGTCTCAAGGAGCTCATCGACAAACGCAAGA
AGTTCCTCAAGTACTTGAGACGTTGGGATTATCCCCGCTTCGAGTGGATT
CTCGAGAAACTCGACCTGGTGTACAAGCCACCGCCCACACATTTCCACTG
GATCACCCGCAAGGAATCCCTCCAAAAGTTGACCGACATATACTGCGAAA
ACCTAAAGGAAGAGCGGCTAGAGGCTTACCATAAGCAGCTGCAGGCCCAG
CAAATACCCTTCCTTGAGGAGGCCATCAAGAAGATGCAGTTCGTGCGGCA
GGAACAGATTTCCTGCGATGTCCCCGTGACCGTGACAGAAGAGAAGATCG
CCGACTCAAAAAGGCAGCTGGAAATGCTGAAGGAGCTGCAGCAGGCGGAG
GCAGCCGCCAGCAGCAAGAAACAAAACGAGGATGGCTTCAATTAGGCCCG
ATTCTTTAATGTTACGGTGTCTTACAATAAATGTAAATGCTGGTTTTCTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH15448.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
bonsai-RA 1070 bonsai-RA 48..1000 1..953 4765 100 Plus
CG3732-RA 1345 CG3732-RA 1270..1345 953..878 380 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18524825..18525382 393..950 2715 99.1 Plus
chr2R 21145070 chr2R 18524315..18524572 1..258 1245 98.8 Plus
chr2R 21145070 chr2R 18524632..18524765 259..392 670 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:54:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22638311..22638871 393..953 2805 100 Plus
2R 25286936 2R 22637801..22638058 1..258 1290 100 Plus
2R 25286936 2R 22638118..22638251 259..392 670 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22639510..22640070 393..953 2805 100 Plus
2R 25260384 2R 22639000..22639257 1..258 1290 100 Plus
2R 25260384 2R 22639317..22639450 259..392 670 100 Plus
Blast to na_te.dros performed 2019-03-16 08:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3996..4085 817..904 112 60 Plus

GH15448.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:41:55 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18524315..18524572 1..258 98 -> Plus
chr2R 18524632..18524765 259..392 100 -> Plus
chr2R 18524825..18525382 393..950 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:44:33 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 1..843 53..895 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:58:28 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 1..843 53..895 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:48:15 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 1..843 53..895 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:49:16 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 1..843 53..895 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:45:57 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 1..843 53..895 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:15:03 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 30..979 1..950 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:58:28 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 30..979 1..950 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:48:15 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 32..981 1..950 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:49:16 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 30..979 1..950 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:45:57 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 32..981 1..950 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:55 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22637801..22638058 1..258 100 -> Plus
2R 22638118..22638251 259..392 100 -> Plus
2R 22638311..22638868 393..950 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:55 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22637801..22638058 1..258 100 -> Plus
2R 22638118..22638251 259..392 100 -> Plus
2R 22638311..22638868 393..950 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:55 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22637801..22638058 1..258 100 -> Plus
2R 22638118..22638251 259..392 100 -> Plus
2R 22638311..22638868 393..950 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:48:15 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18525306..18525563 1..258 100 -> Plus
arm_2R 18525623..18525756 259..392 100 -> Plus
arm_2R 18525816..18526373 393..950 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:20:43 Download gff for GH15448.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22639317..22639450 259..392 100 -> Plus
2R 22639000..22639257 1..258 100 -> Plus
2R 22639510..22640067 393..950 100   Plus

GH15448.pep Sequence

Translation from 52 to 894

> GH15448.pep
MNKLLNIAQAGHRQFVREYAFKSDLKIKWMRPEKIACYKPEKSGDLAKLP
PLKADELLPEYRDCKELDKADESVKSLFKLSNNASYLTTKFYRDEMVKEV
QRHAQDFGSMEAKLAKMTAVIRRYQEHMDKHPRDKMIKVRLKELIDKRKK
FLKYLRRWDYPRFEWILEKLDLVYKPPPTHFHWITRKESLQKLTDIYCEN
LKEERLEAYHKQLQAQQIPFLEEAIKKMQFVRQEQISCDVPVTVTEEKIA
DSKRQLEMLKELQQAEAAASSKKQNEDGFN*

GH15448.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11906-PA 280 GF11906-PA 1..280 1..280 1293 86.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21060-PA 280 GG21060-PA 1..280 1..280 1418 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21563-PA 279 GH21563-PA 1..279 1..280 1194 78.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
bonsai-PA 280 CG4207-PA 1..280 1..280 1461 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19535-PA 279 GI19535-PA 1..279 1..280 1154 76.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11592-PA 280 GL11592-PA 1..280 1..280 1234 80 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18031-PA 280 GA18031-PA 1..280 1..280 1242 80.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15929-PA 280 GM15929-PA 1..280 1..280 1450 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11682-PA 280 GD11682-PA 1..280 1..280 1454 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21104-PA 279 GJ21104-PA 1..279 1..280 1183 78.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17900-PA 280 GK17900-PA 1..280 1..280 1191 77.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14002-PA 280 GE14002-PA 1..280 1..280 1411 95 Plus

GH15448.hyp Sequence

Translation from 52 to 894

> GH15448.hyp
MNKLLNIAQAGHRQFVREYAFKSDLKIKWMRPEKIACYKPEKSGDLAKLP
PLKADELLPEYRDCKELDKADESVKSLFKLSNNASYLTTKFYRDEMVKEV
QRHAQDFGSMEAKLAKMTAVIRRYQEHMDKHPRDKMIKVRLKELIDKRKK
FLKYLRRWDYPRFEWILEKLDLVYKPPPTHFHWITRKESLQKLTDIYCEN
LKEERLEAYHKQLQAQQIPFLEEAIKKMQFVRQEQISCDVPVTVTEEKIA
DSKRQLEMLKELQQAEAAASSKKQNEDGFN*

GH15448.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
bonsai-PA 280 CG4207-PA 1..280 1..280 1461 100 Plus