Clone GH15456 Report

Search the DGRC for GH15456

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:154
Well:56
Vector:pOT2
Associated Gene/Transcriptpn-RA
Protein status:GH15456.pep: gold
Preliminary Size:1794
Sequenced Size:1766

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3461 2001-07-04 Blastp of sequenced clone
CG3461 2003-01-01 Sim4 clustering to Release 3
pn 2008-04-29 Release 5.5 accounting
pn 2008-08-15 Release 5.9 accounting
pn 2008-12-18 5.12 accounting

Clone Sequence Records

GH15456.complete Sequence

1766 bp (1766 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051502

> GH15456.complete
ATTACATTACTGCGTTACAAACAAATGCATTATATATGTATTTATATACA
TTAAAGCATTATCTTTGTAATTTATTTATTTCAGTTTCGCGCTGATCAAT
CGATAAATGTCACATCGAATCGATACGCGCAACTGTTGAAATATATGGAA
GCTATCAGCCGTTTGTTTTCCCAGCTTTTCCGAGATTTCCCTAACAAATG
TGCTTTCTACGATTTTTGGCCCAGGCCAGGGGCACCTTGGGACGGCATCT
GGCGGAGGCCTCACCAGTTGCCTGGGCTGCTGCTCCCGACGTTTCCGGCC
GGAAATTACATCTGGTAATGGGCAACGAATCGTGTGACTTGGACTCCGCC
GTTTCGGCCGTCACTTTGGCTTTTGTCTACGCGCAGCGTCATCGGGAGCA
CGACTATGTACCTATACTGAACATTCCTCGCCGGGACTACCCGTTGAAAA
CCGAGGTGGGCCACTTGTTTGTGAAATGTGGGATTGCCGAGCCCGTGTTG
CTCTTCCGAGACGATATTCCCCGGGAAGTGGTCCAGGATGTGAACGTTAT
TCTCGTGGACCACCATGTAAGCCCGCTGGCGCCAAATGTTACTGAAATTT
TGGATCACAGGCCCTTGGAGGACAGCAGTCCATCCTTCAAGCAGCTGCCA
ACACTCTGCCAACTGGACATAGATGCCTCGGTGGGTTCCTGCGCCACTCT
GGTGGCCCAGCGGTATTTGGCAGAGGACCAACCCCGATCCACTAGCGTGG
CCCAGCTGCTGCACGCCACCATCGTGCTGGACACAATTAATTTTGCACCC
GCGGCCAAGCGCTACGGGCCAAAGGACGAAGCCATGGTACAGAAGTTGGA
GAGCGAGCTTAACCGTAAGGACGCTCAAAGAAGTAGCCTTTTTGATGAGC
TAGTGGCTGCAAGGGCTGATATTAGTAAGCTAACTCTCACCGAAGTTTTG
CGCAAGGATATGAAGGTCTTGCAAACCGATCGTCAGGTGGTTCCCTTAGC
TGGAATGCCCATCCTAGTCAGAGATTTTGTGGAGAAAAGCGGCGCCGAAA
AAGCCGTTCGCGAGTTTGGCGTGGAGAGTAACCTTTTGGTTATCCTGGGA
ATGTATGTATCACCTGCCGATGGCCAGGTGCAGCGTGACCTGGCCTTGAT
CTCTCTCTCCGGCCAAGGCCAATTCGTTCAACGCGTCCAGCAAGCACTGA
TGGAGTCTAACGATCCAAAATTGGAGTTGCGACCTCACGAGGTGGACACC
CGCTTTATGGGCGGCTGCTTCTTGCGCCAACACAACGTCCAGGCCACCAG
AAAGCACATCCTGCCCATTGTTAAGCGAGCGCTGCTTGAATGGGAAGCGG
ATCACGCCTGCGATTGTGACGAGGTGTACTTCTTCAAGGAGAAGCCGCAG
CTGGGACTCTCTTAAGAAGAGATCAGGCCAAACGGAAGCTTAGACAAGAC
TTAGCTATAATTTTAGCGCAACCGTTATGTTACCAACGTTAAGCTTACAC
CAAAAAGACATAGCGAATTTCCCATTTACGATAAATTGACGAAGGCAAGC
GAGTGAAATATGGAAGCAATCAGTATTCCAAATTTAAGTTACTTTGCAAC
CTTGGTAACATAAAGGCAAATTAGTTTCAGAGTATTCACACATTAAGCTC
TATCCAGTTTCCTAGTTGTTTATATGGATTAAGCGATTATGTACAGGGTA
TACATGGGTAAAAGAAAGCGTTATGATTAATAAAAAAAAGGACTACAAAA
AAAAAAAAAAAAAAAA

GH15456.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
pn-RA 1794 pn-RA 26..1773 1..1748 8725 99.9 Plus
Nmd3-RA 1931 Nmd3-RA 1748..1931 1748..1565 920 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2075344..2076845 245..1746 7465 99.8 Plus
chrX 22417052 chrX 2075032..2075276 1..245 1225 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:54:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2181415..2182918 245..1748 7505 99.9 Plus
X 23542271 X 2181103..2181347 1..245 1225 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2189513..2191016 245..1748 7505 99.9 Plus
X 23527363 X 2189201..2189445 1..245 1225 100 Plus
Blast to na_te.dros performed on 2019-03-16 17:26:13 has no hits.

GH15456.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:26:53 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2075032..2075276 1..245 100 -> Plus
chrX 2075345..2076845 246..1746 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:44:35 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
pn-RA 1..1218 198..1415 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:22 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
pn-RA 1..1218 198..1415 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:56:15 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
pn-RA 1..1218 198..1415 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:59:30 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
pn-RA 1..1218 198..1415 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:19 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
pn-RA 1..1218 198..1415 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:25:18 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
pn-RA 10..1755 1..1746 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:22 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
pn-RA 10..1755 1..1746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:56:15 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
pn-RA 1..1638 109..1746 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:59:31 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
pn-RA 10..1755 1..1746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:19 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
pn-RA 1..1638 109..1746 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:53 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
X 2181103..2181347 1..245 100 -> Plus
X 2181416..2182916 246..1746 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:53 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
X 2181103..2181347 1..245 100 -> Plus
X 2181416..2182916 246..1746 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:53 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
X 2181103..2181347 1..245 100 -> Plus
X 2181416..2182916 246..1746 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:56:15 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2075136..2075380 1..245 100 -> Plus
arm_X 2075449..2076949 246..1746 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:37:19 Download gff for GH15456.complete
Subject Subject Range Query Range Percent Splice Strand
X 2189201..2189445 1..245 100 -> Plus
X 2189514..2191014 246..1746 99   Plus

GH15456.pep Sequence

Translation from 197 to 1414

> GH15456.pep
MCFLRFLAQARGTLGRHLAEASPVAWAAAPDVSGRKLHLVMGNESCDLDS
AVSAVTLAFVYAQRHREHDYVPILNIPRRDYPLKTEVGHLFVKCGIAEPV
LLFRDDIPREVVQDVNVILVDHHVSPLAPNVTEILDHRPLEDSSPSFKQL
PTLCQLDIDASVGSCATLVAQRYLAEDQPRSTSVAQLLHATIVLDTINFA
PAAKRYGPKDEAMVQKLESELNRKDAQRSSLFDELVAARADISKLTLTEV
LRKDMKVLQTDRQVVPLAGMPILVRDFVEKSGAEKAVREFGVESNLLVIL
GMYVSPADGQVQRDLALISLSGQGQFVQRVQQALMESNDPKLELRPHEVD
TRFMGGCFLRQHNVQATRKHILPIVKRALLEWEADHACDCDEVYFFKEKP
QLGLS*

GH15456.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22198-PA 405 GF22198-PA 1..405 1..405 1674 75.8 Plus
Dana\GF20340-PA 438 GF20340-PA 14..409 17..392 417 31.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12916-PA 405 GG12916-PA 1..405 1..405 2009 93.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17810-PA 407 GH17810-PA 1..407 1..405 1399 65.1 Plus
Dgri\GH12833-PA 399 GH12833-PA 34..394 37..382 378 31.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
pn-PA 405 CG3461-PA 1..405 1..405 2070 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11044-PA 421 GI11044-PA 1..421 1..405 1277 60 Plus
Dmoj\GI14915-PA 404 GI14915-PA 34..397 37..384 434 32.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13325-PA 262 GL13325-PA 3..262 150..405 925 65.8 Plus
Dper\GL13324-PA 124 GL13324-PA 1..111 1..111 414 66.7 Plus
Dper\GL13101-PA 422 GL13101-PA 32..411 26..388 315 28.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17466-PA 409 GA17466-PA 1..409 1..405 1475 66 Plus
Dpse\GA23059-PA 425 GA23059-PA 32..414 26..388 281 29.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19207-PA 405 GM19207-PA 1..405 1..405 2109 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16595-PA 131 GD16595-PA 1..108 1..108 526 91.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15824-PA 422 GJ15824-PA 2..422 9..405 1344 62.1 Plus
Dvir\GJ18950-PA 395 GJ18950-PA 1..389 1..385 423 31.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16048-PA 379 GK16048-PA 1..379 1..390 1210 59 Plus
Dwil\GK25312-PA 369 GK25312-PA 1..366 37..385 405 31.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16244-PA 405 GE16244-PA 1..405 1..405 2055 95.8 Plus

GH15456.hyp Sequence

Translation from 197 to 1414

> GH15456.hyp
MCFLRFLAQARGTLGRHLAEASPVAWAAAPDVSGRKLHLVMGNESCDLDS
AVSAVTLAFVYAQRHREHDYVPILNIPRRDYPLKTEVGHLFVKCGIAEPV
LLFRDDIPREVVQDVNVILVDHHVSPLAPNVTEILDHRPLEDSSPSFKQL
PTLCQLDIDASVGSCATLVAQRYLAEDQPRSTSVAQLLHATIVLDTINFA
PAAKRYGPKDEAMVQKLESELNRKDAQRSSLFDELVAARADISKLTLTEV
LRKDMKVLQTDRQVVPLAGMPILVRDFVEKSGAEKAVREFGVESNLLVIL
GMYVSPADGQVQRDLALISLSGQGQFVQRVQQALMESNDPKLELRPHEVD
TRFMGGCFLRQHNVQATRKHILPIVKRALLEWEADHACDCDEVYFFKEKP
QLGLS*

GH15456.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
pn-PA 405 CG3461-PA 1..405 1..405 2070 100 Plus