Clone GH15479 Report

Search the DGRC for GH15479

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:154
Well:79
Vector:pOT2
Associated Gene/TranscriptCG9389-RA
Protein status:GH15479.pep: gold
Preliminary Size:1975
Sequenced Size:2012

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9389 2001-01-01 Release 2 assignment
CG9389 2001-10-10 Blastp of sequenced clone
CG9389 2003-01-01 Sim4 clustering to Release 3
CG9389 2008-04-29 Release 5.5 accounting
CG9389 2008-08-15 Release 5.9 accounting
CG9389 2008-12-18 5.12 accounting

Clone Sequence Records

GH15479.complete Sequence

2012 bp (2012 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060713

> GH15479.complete
TCACACTTGTTTTGCTGAATTTAGGCTCGGTCTTTCAACACCTTGGTGGC
AGTAACAGATCTTTGTCCGGGTTGTTGTTTGGGGCTGTGGACGAGCACCA
CCAGAATGGTCGACGAAAAGCTACCACCAAGCAAGGAACCGGCTGAACGG
CCTCCAGACCAGACCACCCCCGGAAACGCGGCTACCCGATTCGGCTTGGA
GGATCACGAGGCCACTCAGCAGGATGCCCGGGTGAACACACTGCGCCAAG
CAGAAGAGCGACGTGGTTCAATGGTGCCTCCCGACAAGCGGGCGATGTCC
ATGAAGATGTCGCAAGCGCGCTTACACACCATAAATGATCCGAATCGAAC
TGGCACACATTCTGCTGAAGCGACGACACCACCGGCCAAGCCTGCGGTCA
ACATTTCGTCGCGGAGTTCTTTGGTAAGAGGTGTGGCGCCAGATCTTCCA
CCCAAGCCGCAGCGCCCCTCCGATAGCGAGGCCGATCTTGAATCGTCCGA
TGTGGATAGACCATCGGCAAAAAGGAAATCGGAGAAAGCTCTAGCTGATG
TGTCAACTTCGTCATCGGAGGAATCAGAGAAACGCGTCCCACCTGCTGCT
GCATCGGCGCCTCCTCCAGCACAAGCTGAGCCTCAGTGGAAATCAATTGA
TTTTGCAGCATCGGAAGCTGAGCCCATTGCCCCGCCGGCGCCTAGGCCGG
AGGATGTACCATTGCCCCCACCCATGATGTCGTCTTTGCCGACGGATGGA
AGCCCCGACGATGTGCAGAGCATAAACAGCAAGTTGACCAATACCGACAT
CACTTTTCACCCATCCAAGGTATTCGCCTCGAAGGCAACTAACACTTCGG
GCATGCTCTACTCCGACGAGGAAAATGAGCCGGAGGAAGAGGAATTTCCA
AAGCTTCCGGATCAGTTTTCCGCCAGCGATCTGGACACTTTGTTCCTGCT
GGCTTGTCGGGAGGTGAAGAAGGCTGGTGCTATCGCTCTTGCGGAAAACA
AAAAGAACCAGGAGTACACCACCAAGAAGCACACGAATGATATCGTCACT
CCCACCGACAACATTGTCGAGGAGTCTTTCATTAAGGCCATCAGCTCACG
GTATCCCAATCACCAATTTATTGCCGAAGAGAGAATTTCAAAGTCGGAGA
CTGGTATGGTGACCCTGACCGATGACCCCACCTGGATAATCGATCCCATT
GATGGCACCATGAACTTTGTCCACCACTTTCCGTACTACTGCATCTCCGT
GGCCTATTTGGTAAATCAGGAGACCCAGTTTGGTATTATCTATAATCCGC
CCATGAAGAATATGTACACGGCCCAACTGGGCAAGGGTGCTCAAATGAAC
GGCGAGATGATAAGGACCACTGGCCAAACCAACCTCTCCGCGGCCATGGT
TCTACAGGAGTACAGCTCGGGCAGCAATGAGGCGCGTAACCAAGTGGCCA
CTGAAAATTCCCAGCGACTGGTAAAGAAAACCCATGCGATGCGCTCTATT
GGATCCTCCGCCATGTGCTTGGCAATGGTCGCCTCCGGAGTGGCGGATGC
CTTCTACAACTTTGGGCTGCACGTTTGGGATATGGCAGCAGGCGCTTTGA
TAGTCACGGAGGCCGGAGGAGTGGTAATGGATCCGGCCGGAGAGGAGTTG
GACATTATGTCCCGCCGCTGCCTCGCTGCCTCTACTGACTACCTTGCCCT
CGAATTGGGTAACTGCCTGCAGCAGAATTATCCATCTCCACGTGACGACG
AGCCGCGTTCCGTTAACCCCAATGAGTACGGGCCTGCTCCGGAGACCAGG
GACTTTACCAGCCAAACGGACTTCCCCGATTCGGATACCCCAGAAACCAC
TGACACCGAAATAGGCGGCGAAAAATCAGCGACGCCAGCTAACTAATTGA
CCACCAGAAAGGCCAGCTTTAAATTGCATTTTAAAATTTTAGTTGTTTAA
TAAACTGACAATGCATGGTTTTTCCATGTTTTGTTTTTACTTGTAAAAAA
AAAAAAAAAAAA

GH15479.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9389-RA 2076 CG9389-RA 80..2075 1..1996 9980 100 Plus
CG9391-RA 1124 CG9391-RA 372..459 1165..1252 260 86.3 Plus
CG9391.a 1170 CG9391.a 423..510 1165..1252 260 86.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21258425..21259539 1115..1 5575 100 Minus
chr3L 24539361 chr3L 21257400..21257906 1994..1488 2535 100 Minus
chr3L 24539361 chr3L 21257974..21258346 1488..1116 1865 100 Minus
chr3L 24539361 chr3L 21256410..21256497 1252..1165 260 86.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:54:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21269417..21270531 1115..1 5575 100 Minus
3L 28110227 3L 21268390..21268898 1996..1488 2545 100 Minus
3L 28110227 3L 21268966..21269338 1488..1116 1865 100 Minus
3L 28110227 3L 21267402..21267489 1252..1165 260 86.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21262517..21263631 1115..1 5575 100 Minus
3L 28103327 3L 21261490..21261998 1996..1488 2545 100 Minus
3L 28103327 3L 21262066..21262438 1488..1116 1865 100 Minus
3L 28103327 3L 21260502..21260589 1252..1165 260 86.3 Minus
Blast to na_te.dros performed on 2019-03-15 15:25:41 has no hits.

GH15479.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:26:36 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21257400..21257906 1488..1994 100 <- Minus
chr3L 21257975..21258346 1116..1487 100 <- Minus
chr3L 21258425..21259539 1..1115 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:44:38 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9389-RA 1..1791 106..1896 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:35 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9389-RA 1..1791 106..1896 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:28:42 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9389-RA 1..1791 106..1896 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:27 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9389-RA 1..1791 106..1896 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:06:28 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9389-RA 1..1791 106..1896 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:18:16 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9389-RA 50..2043 1..1994 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:35 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9389-RA 50..2043 1..1994 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:28:42 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9389-RA 50..2043 1..1994 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:28 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9389-RA 50..2043 1..1994 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:06:28 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9389-RA 50..2043 1..1994 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:26:36 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21268392..21268898 1488..1994 100 <- Minus
3L 21268967..21269338 1116..1487 100 <- Minus
3L 21269417..21270531 1..1115 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:26:36 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21268392..21268898 1488..1994 100 <- Minus
3L 21268967..21269338 1116..1487 100 <- Minus
3L 21269417..21270531 1..1115 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:26:36 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21268392..21268898 1488..1994 100 <- Minus
3L 21268967..21269338 1116..1487 100 <- Minus
3L 21269417..21270531 1..1115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:28:42 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21261492..21261998 1488..1994 100 <- Minus
arm_3L 21262067..21262438 1116..1487 100 <- Minus
arm_3L 21262517..21263631 1..1115 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:29 Download gff for GH15479.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21261492..21261998 1488..1994 100 <- Minus
3L 21262067..21262438 1116..1487 100 <- Minus
3L 21262517..21263631 1..1115 100   Minus

GH15479.pep Sequence

Translation from 105 to 1895

> GH15479.pep
MVDEKLPPSKEPAERPPDQTTPGNAATRFGLEDHEATQQDARVNTLRQAE
ERRGSMVPPDKRAMSMKMSQARLHTINDPNRTGTHSAEATTPPAKPAVNI
SSRSSLVRGVAPDLPPKPQRPSDSEADLESSDVDRPSAKRKSEKALADVS
TSSSEESEKRVPPAAASAPPPAQAEPQWKSIDFAASEAEPIAPPAPRPED
VPLPPPMMSSLPTDGSPDDVQSINSKLTNTDITFHPSKVFASKATNTSGM
LYSDEENEPEEEEFPKLPDQFSASDLDTLFLLACREVKKAGAIALAENKK
NQEYTTKKHTNDIVTPTDNIVEESFIKAISSRYPNHQFIAEERISKSETG
MVTLTDDPTWIIDPIDGTMNFVHHFPYYCISVAYLVNQETQFGIIYNPPM
KNMYTAQLGKGAQMNGEMIRTTGQTNLSAAMVLQEYSSGSNEARNQVATE
NSQRLVKKTHAMRSIGSSAMCLAMVASGVADAFYNFGLHVWDMAAGALIV
TEAGGVVMDPAGEELDIMSRRCLAASTDYLALELGNCLQQNYPSPRDDEP
RSVNPNEYGPAPETRDFTSQTDFPDSDTPETTDTEIGGEKSATPAN*

GH15479.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10176-PA 639 GF10176-PA 4..633 9..583 1336 47.5 Plus
Dana\GF10177-PA 277 GF10177-PA 6..277 275..548 673 46.7 Plus
Dana\GF24103-PA 284 GF24103-PA 6..265 272..531 427 37.2 Plus
Dana\GF24105-PA 288 GF24105-PA 39..274 305..540 412 39.3 Plus
Dana\GF24102-PA 286 GF24102-PA 46..274 312..540 391 37.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13251-PA 602 GG13251-PA 1..602 1..596 2556 84.1 Plus
Dere\GG13252-PA 278 GG13252-PA 6..278 275..548 701 47.8 Plus
Dere\GG15938-PA 284 GG15938-PA 6..265 272..531 432 38.6 Plus
Dere\GG15939-PA 288 GG15939-PA 22..274 289..540 409 37.5 Plus
Dere\GG15937-PA 284 GG15937-PA 46..274 312..540 378 37.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16521-PA 597 GH16521-PA 229..573 223..570 1091 58.7 Plus
Dgri\GH16522-PA 278 GH16522-PA 6..278 275..548 656 48.2 Plus
Dgri\GH14775-PA 286 GH14775-PA 6..267 270..531 442 38.8 Plus
Dgri\GH14776-PA 290 GH14776-PA 18..277 289..540 429 38.5 Plus
Dgri\GH14777-PA 286 GH14777-PA 6..276 272..540 427 37.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9389-PA 596 CG9389-PA 1..596 1..596 3094 100 Plus
CG9391-PC 278 CG9391-PC 6..278 275..548 667 47.8 Plus
CG9391-PA 278 CG9391-PA 6..278 275..548 667 47.8 Plus
CG17029-PB 284 CG17029-PB 6..274 272..540 435 35.9 Plus
CG17029-PA 284 CG17029-PA 6..274 272..540 435 35.9 Plus
CG17027-PB 288 CG17027-PB 5..274 272..540 409 35.9 Plus
CG17027-PA 288 CG17027-PA 5..274 272..540 409 35.9 Plus
CG17028-PB 284 CG17028-PB 10..265 276..531 394 33.9 Plus
CG17028-PA 284 CG17028-PA 10..265 276..531 394 33.9 Plus
CG17026-PA 284 CG17026-PA 46..274 312..540 382 36.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12202-PA 568 GI12202-PA 26..550 22..576 880 37.8 Plus
Dmoj\GI12203-PA 278 GI12203-PA 6..278 275..548 692 48.5 Plus
Dmoj\GI12201-PA 636 GI12201-PA 360..636 275..550 553 43.4 Plus
Dmoj\GI11877-PA 283 GI11877-PA 5..264 272..531 438 40.2 Plus
Dmoj\GI11878-PA 282 GI11878-PA 17..277 288..553 432 38.5 Plus
Dmoj\GI12201-PA 636 GI12201-PA 9..247 263..502 428 35.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24595-PA 663 GL24595-PA 17..640 22..575 1138 43.3 Plus
Dper\GL24596-PA 278 GL24596-PA 6..278 275..548 652 45.6 Plus
Dper\GL12746-PA 284 GL12746-PA 18..270 289..540 414 37.5 Plus
Dper\GL12745-PA 286 GL12745-PA 5..267 270..531 408 36.4 Plus
Dper\GL12743-PA 287 GL12743-PA 21..268 289..534 387 37.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21751-PA 699 GA21751-PA 231..676 194..575 1095 51.2 Plus
Dpse\GA23361-PA 278 GA23361-PA 6..278 275..548 691 47.1 Plus
Dpse\GA14281-PA 285 GA14281-PA 7..266 272..531 435 37.2 Plus
Dpse\GA14279-PA 292 GA14279-PA 26..278 289..540 415 37.5 Plus
Dpse\GA28212-PA 286 GA28212-PA 5..267 270..531 407 36.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22155-PA 592 GM22155-PA 1..592 1..596 2850 94.5 Plus
Dsec\GM25568-PA 284 GM25568-PA 33..265 298..531 424 39.7 Plus
Dsec\GM25570-PA 288 GM25570-PA 46..281 312..553 416 39.2 Plus
Dsec\GM25569-PA 284 GM25569-PA 4..265 270..531 397 34.8 Plus
Dsec\GM25567-PA 284 GM25567-PA 46..274 312..540 378 36.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12131-PA 593 GD12131-PA 1..593 1..596 2762 93.8 Plus
Dsim\GD12132-PA 278 GD12132-PA 6..278 275..548 664 47.4 Plus
Dsim\GD14583-PA 284 GD14583-PA 33..265 298..531 425 39.7 Plus
Dsim\GD14585-PA 288 GD14585-PA 46..281 312..553 415 39.2 Plus
Dsim\GD14584-PA 284 GD14584-PA 4..265 270..531 402 35.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11435-PA 616 GJ11435-PA 239..598 225..573 1020 55.5 Plus
Dvir\GJ11436-PA 278 GJ11436-PA 6..278 275..548 651 47.4 Plus
Dvir\GJ11434-PA 487 GJ11434-PA 195..475 272..550 611 42.8 Plus
Dvir\GJ11433-PA 304 GJ11433-PA 16..300 270..557 609 42 Plus
Dvir\GJ13573-PA 285 GJ13573-PA 4..266 269..531 436 38.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20398-PA 704 GK20398-PA 90..630 6..576 1273 46.7 Plus
Dwil\GK17369-PA 279 GK17369-PA 4..279 272..548 687 47.3 Plus
Dwil\GK24473-PA 281 GK24473-PA 3..262 272..531 436 39.4 Plus
Dwil\GK24484-PA 290 GK24484-PA 4..280 272..553 432 37.1 Plus
Dwil\GK24463-PA 284 GK24463-PA 45..268 312..534 385 38.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22351-PA 603 GE22351-PA 1..603 1..596 2538 83.4 Plus
Dyak\GE22962-PA 603 GE22962-PA 1..603 1..596 2516 83.6 Plus
Dyak\GE22963-PA 278 GE22963-PA 6..278 275..548 670 47.4 Plus
Dyak\GE22872-PA 284 GE22872-PA 6..265 272..531 428 38.6 Plus
Dyak\GE22876-PA 284 GE22876-PA 6..265 272..531 428 38.6 Plus

GH15479.hyp Sequence

Translation from 105 to 1895

> GH15479.hyp
MVDEKLPPSKEPAERPPDQTTPGNAATRFGLEDHEATQQDARVNTLRQAE
ERRGSMVPPDKRAMSMKMSQARLHTINDPNRTGTHSAEATTPPAKPAVNI
SSRSSLVRGVAPDLPPKPQRPSDSEADLESSDVDRPSAKRKSEKALADVS
TSSSEESEKRVPPAAASAPPPAQAEPQWKSIDFAASEAEPIAPPAPRPED
VPLPPPMMSSLPTDGSPDDVQSINSKLTNTDITFHPSKVFASKATNTSGM
LYSDEENEPEEEEFPKLPDQFSASDLDTLFLLACREVKKAGAIALAENKK
NQEYTTKKHTNDIVTPTDNIVEESFIKAISSRYPNHQFIAEERISKSETG
MVTLTDDPTWIIDPIDGTMNFVHHFPYYCISVAYLVNQETQFGIIYNPPM
KNMYTAQLGKGAQMNGEMIRTTGQTNLSAAMVLQEYSSGSNEARNQVATE
NSQRLVKKTHAMRSIGSSAMCLAMVASGVADAFYNFGLHVWDMAAGALIV
TEAGGVVMDPAGEELDIMSRRCLAASTDYLALELGNCLQQNYPSPRDDEP
RSVNPNEYGPAPETRDFTSQTDFPDSDTPETTDTEIGGEKSATPAN*

GH15479.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9389-PA 596 CG9389-PA 1..596 1..596 3094 100 Plus
CG9391-PC 278 CG9391-PC 6..278 275..548 667 47.8 Plus
CG9391-PA 278 CG9391-PA 6..278 275..548 667 47.8 Plus
CG17029-PB 284 CG17029-PB 6..274 272..540 435 35.9 Plus
CG17029-PA 284 CG17029-PA 6..274 272..540 435 35.9 Plus