Clone GH15549 Report

Search the DGRC for GH15549

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:155
Well:49
Vector:pOT2
Associated Gene/TranscriptCG18809-RA
Protein status:GH15549.pep: gold
Preliminary Size:2661
Sequenced Size:2922

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18809 2001-01-01 Release 2 assignment
CG14235 2001-01-01 Release 2 assignment
CG18809 2001-07-04 Blastp of sequenced clone
CG14235 2003-01-01 Sim4 clustering to Release 3
CG18809 2008-04-29 Release 5.5 accounting
CG18809 2008-08-15 Release 5.9 accounting
CG14235 2008-08-15 Release 5.9 accounting
CG18809 2008-12-18 5.12 accounting
CG14235 2008-12-18 5.12 accounting

Clone Sequence Records

GH15549.complete Sequence

2922 bp (2922 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060308

> GH15549.complete
TTTGATGAGGGGCGGGCCGGGTCTGCATCTTCCTGCGTAAGTTGGCCCCC
ACCAAATGGATCCGTAACCGAATGGGCGTACGGATCCCCAGGGTTACATA
AGTCACCGCCCGCCACCGAGGGGTTGCAACGGAAAGCGAACAGAAACAGT
CCCCTTAACGTAGCCACTATTTTGTAGCCAGAAAGAAAACTCAACTCAAA
TCAGATCAGATCAAACCCCCTGCACAGCGCGTCCTGGTTCGAGTAACGTT
TTGTATTCATGCGTTCAAGTCATTTTTCCATGCAGGCGAATCCGAAAATC
CGATACGTTTCAGAGTCGCAAACAGTCAAGAGTTAAGCACAAATCGCCAC
TAAAAGCTAAAAGGCTAACAAGCTGAATCGCACTGATTCGCACGTAGCCA
GCCAAACGGAAGGACTCCTCCGCATCCACAGCAGCAGCAACGGCGAGCAG
CACGAACAACATCCACGGATGATAACGTAACGTAGCCGCAACGTTGGAGC
AACACCACCTTCCACATCCACTTCCACCGCAGCGGACATCGCAAACAAAT
CATCACTACATCCACACCCGACATGTCGGCGGCCCGCCTGCCCTACTATC
AGCGGGATCAGGAGGACGGCCACCAGCGGCGCGCCGCACGCGGCCATCAG
CGCGGCTACTACGAGCGTGGCTCTGGTTCCGGATCCTCCAGACGAGAGCA
CAGTCGCTACAGTCGCAGCCGTTCGCGTTCCCGCAGTCGCAGCCGCTCCG
CCGAACGCTTTGGCCAGCGTCGCCGCCACCAGAAACGGCAGTCATCCCGT
TACCACAGAGACCGCGACTCCAGAGATCGCTCCCGAGATCGCTCCCGAGA
TCGCTCTAGGGATCGCGAACGTGATCGCGATAGGGACCACTCAAGGCGCT
CCAGCCACTATCGACGCTCGGAATCGCCGTCCTCTTCTGACATTGGCCAT
GGATCCAACAACAGTCAACGAAGAGGCCACCATGCATCATCATCCAGTAA
ATCGGAGCTAAGCGCCGTACAGAAGGCAGCCGCTGCAGCTGCCGCCGCCA
CAAATCAAGTCCAGTTGGCTGGCAAGAGCAGTGCCGCGTCCGCGGTGGGC
GCCTACTACAACCTGGACACCGACGAGCCCTTTGACAAGGAGCGCATCCA
CCGCGAAATGGAGCAGAAGCTGCGCGAAGCACTGGCCAGGGAGGGCAAAG
TGTATCCGCCGCCAAAGCCTGAGCCACCATCGCATCCTGTCTTCGCCAAC
GACGGCTCGTTCATGGAGCTGTTTAAGAAGATGCAGGAGGGCCAAAAGCA
GCAAGCGACCAGCCAGTTGATGCAGCCATCGGTCAAAGAGGTCCTGCAGC
AGCAGTTGGTTCCGCCGGAGGCGGCCTCCACAGGGCCTGCACTGCCGGCC
ATTGCATTGGGAGCTGCCAGCAGTGCTGCGGCGCCGTACATTGCTGCCGC
GGCGGCCGGAAAGCTGGCGCCGCCGCCACCCATCGTGGGACGACGTCGCG
GCGGAAAAGTTCTCAAAACTGGCGTAGTGGCCAAAGTGAAGACGCCCAAT
GAGAGCGACGTGGACCCGAAGGACTTCTGGTCGTTGTACCTGGCCGAGGT
CAACAAGTACAAGAGCAACGCCTGCGATACGGACAACGGCAAGCGGCCGC
TGGTCAAGTAGTCGCCGAAATAGTCGCGCTTTCCATAGAAACATGAACTT
GAACGCAAAAAGAGCGAGAAACGTATACTGCCCAGACGCAGTACTGCAGA
TTCGATTTTGATTCGACCATACCCCTGTTCCCGAGACACCATCACATAGC
GATCCCTTCCCGGCCCCTTTGAAATGTTTTGTACACGAAAACAAGCGAGC
AGAGATGCGTAGCTTATAGTTTTAGTCGAGAGTGGGTGGGCTTATGAGCT
GCAAGCGCGAGCAGTGTAATTTGTATTTTTTTCACACGAATCGATATAAT
ATAATATAATATGATATATACCGCTCATTAAGCAAACGCAAACTGAAGAA
CTAACCATTGTGATTTATATATCTATCTCTTCCTTCCCGTTTATGCACTG
AAATTGTATTTACGTTTGATTTCGATTCGGTTGTGTACCGCCTCACATCC
CATCCCACCCCATTGTGTTCATCTCTTTCTTTTTCATTTGGACAACGATC
CATCTGTCCCGGTCTTCGTTTTGGTTTACTATTTGGTTGCCTTACCGTTT
CGTTTCGTTATGTTTTTATTTTCCTTTGCCAACTAAAGTCTATATGCAAT
TTTTCATGTCCAAAAACAAAAGCAGCGACAAATCGTCAGACAGCAGCAAC
ATGTCCGCCTACAAGCTGGAGACCGCCCCGTTCGACCCACGGTTCCCTAA
CCAGAACGTGACCCGCTACTGCTACCAGTCGTACATCGACTTCCACCGCT
GCCAGAAGAAGCGCGGCGAGGACTTCGCGCCCTGCAACTACTTCCAGAAG
GTCTACAAGTCGATGTGCCCCAACGCCTGGGTGGAGAAGTGGGACGACCA
GCGCGAGAGCGGCACATTCCCCGGCCGCATCTAAGCTGCGCCAGAGACGC
AGCAACACAGTAAACCCAGCAATCCAGCACCCAAACACACAGGACACGAT
CGATGGACGGACGGAGGTAGAGGAGCGTGGTAACCAGAATCCGGCAATTG
CAACAGAGACTAGTTTGTGTTTGTGCTTTCCCCAGCGGTGAATGCAGACC
ATCATCGGCAAATACAAAAAAAAAATACACAAATGTTCAATTACTTGAAT
TCTGAACCGATCGTTTGTGTTTGTTTCTTCTTGATCCTTGATCCTTGATC
CTTGATTCTTGGTCCTGCCGTTGCTGGCCGAACTGGCATCCGAATCAGAT
CGACGCCACGCCACTGTATTCCGATGTGTTATTATTAATAAACAATTAGA
CACAAAAAAAAAAAAAAAAAAA

GH15549.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG18809-RB 1453 CG18809-RB 76..1453 284..1661 6890 100 Plus
CG18809-RA 1466 CG18809-RA 354..1466 549..1661 5565 100 Plus
CG14235-RA 738 CG14235-RA 74..738 2235..2898 3285 99.8 Plus
CG18809-RA 1466 CG18809-RA 76..340 284..548 1325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19629240..19631603 2903..549 11510 99.3 Minus
chrX 22417052 chrX 19632155..19632702 548..1 2740 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:54:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19740534..19742892 2906..549 11745 100 Minus
X 23542271 X 19743444..19743991 548..1 2740 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19748632..19750990 2906..549 11755 99.9 Minus
X 23527363 X 19751542..19752089 548..1 2740 100 Minus
Blast to na_te.dros performed 2019-03-15 12:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6920 399..562 155 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6911 399..583 154 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6870 420..564 151 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6914 420..533 132 62.2 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 590..706 2284..2404 118 59 Plus

GH15549.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:11:19 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19629240..19631603 549..2903 95 <- Minus
chrX 19632155..19632702 1..548 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:44:46 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG18809-RB 1..1089 573..1661 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:13 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG18809-RB 1..1089 573..1661 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:38:06 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG18809-RB 1..1089 573..1661 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:59:18 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG18809-RB 1..1089 573..1661 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:52:47 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG18809-RB 1..1089 573..1661 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:25:05 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG18809-RB 73..1453 279..1661 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:13 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG18809-RB 73..1453 279..1661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:38:06 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG18809-RB 73..2009 279..2217 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:59:18 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG18809-RB 73..1453 279..1661 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:52:47 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG18809-RB 70..2006 279..2217 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:19 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
X 19740537..19742892 549..2903 99 <- Minus
X 19743444..19743991 1..548 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:19 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
X 19740537..19742892 549..2903 99 <- Minus
X 19743444..19743991 1..548 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:19 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
X 19740537..19742892 549..2903 99 <- Minus
X 19743444..19743991 1..548 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:38:06 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19634570..19636925 549..2903 99 <- Minus
arm_X 19637477..19638024 1..548 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:37:09 Download gff for GH15549.complete
Subject Subject Range Query Range Percent Splice Strand
X 19748635..19750990 549..2903 99 <- Minus
X 19751542..19752089 1..548 100   Minus

GH15549.pep Sequence

Translation from 572 to 1660

> GH15549.pep
MSAARLPYYQRDQEDGHQRRAARGHQRGYYERGSGSGSSRREHSRYSRSR
SRSRSRSRSAERFGQRRRHQKRQSSRYHRDRDSRDRSRDRSRDRSRDRER
DRDRDHSRRSSHYRRSESPSSSDIGHGSNNSQRRGHHASSSSKSELSAVQ
KAAAAAAAATNQVQLAGKSSAASAVGAYYNLDTDEPFDKERIHREMEQKL
REALAREGKVYPPPKPEPPSHPVFANDGSFMELFKKMQEGQKQQATSQLM
QPSVKEVLQQQLVPPEAASTGPALPAIALGAASSAAAPYIAAAAAGKLAP
PPPIVGRRRGGKVLKTGVVAKVKTPNESDVDPKDFWSLYLAEVNKYKSNA
CDTDNGKRPLVK*

GH15549.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20465-PA 393 GF20465-PA 123..249 110..237 307 68.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18025-PA 360 GG18025-PA 1..360 1..362 1033 86.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17816-PA 406 GH17816-PA 101..406 87..362 605 58.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG18809-PD 362 CG18809-PD 1..362 1..362 1858 100 Plus
CG18809-PC 362 CG18809-PC 1..362 1..362 1858 100 Plus
CG18809-PB 362 CG18809-PB 1..362 1..362 1858 100 Plus
CG18809-PA 362 CG18809-PA 1..362 1..362 1858 100 Plus
Caper-PB 594 CG11266-PB 42..163 24..144 187 38.9 Plus
Caper-PA 594 CG11266-PA 42..163 24..144 187 38.9 Plus
CG6695-PB 715 CG6695-PB 408..554 12..160 166 34.4 Plus
CG6695-PA 961 CG6695-PA 408..554 12..160 166 34.4 Plus
Xe7-PD 777 CG2179-PD 596..777 9..149 164 31.7 Plus
B52-PN 350 CG10851-PN 191..333 32..173 162 34.7 Plus
B52-PC 350 CG10851-PC 191..333 32..173 162 34.7 Plus
B52-PA 350 CG10851-PA 191..333 32..173 162 34.7 Plus
B52-PO 355 CG10851-PO 196..338 32..173 162 34.7 Plus
B52-PM 355 CG10851-PM 196..338 32..173 162 34.7 Plus
Xe7-PD 777 CG2179-PD 575..738 25..201 162 31.8 Plus
CG4887-PB 1004 CG4887-PB 140..250 8..133 162 38.1 Plus
CG4887-PA 1004 CG4887-PA 140..250 8..133 162 38.1 Plus
Ctr9-PA 1150 CG2469-PA 1002..1150 12..151 162 34.9 Plus
Ctr9-PB 1150 CG2469-PB 1002..1150 12..151 162 34.9 Plus
ytr-PB 194 CG18426-PB 5..184 32..208 161 31 Plus
ytr-PA 194 CG18426-PA 5..184 32..208 161 31 Plus
B52-PN 350 CG10851-PN 185..325 14..144 161 36.9 Plus
B52-PC 350 CG10851-PC 185..325 14..144 161 36.9 Plus
B52-PA 350 CG10851-PA 185..325 14..144 161 36.9 Plus
B52-PO 355 CG10851-PO 190..330 14..144 161 36.9 Plus
B52-PM 355 CG10851-PM 190..330 14..144 161 36.9 Plus
snRNP-U1-70K-PC 448 CG8749-PC 252..354 16..130 159 35.7 Plus
snRNP-U1-70K-PA 448 CG8749-PA 252..354 16..130 159 35.7 Plus
CG6695-PA 961 CG6695-PA 832..945 34..135 157 38.3 Plus
CG31211-PA 874 CG31211-PA 710..851 33..144 156 36.2 Plus
CG31211-PB 893 CG31211-PB 729..870 33..144 156 36.2 Plus
CG8108-PA 919 CG8108-PA 19..162 8..142 154 32.2 Plus
CG8108-PB 919 CG8108-PB 19..162 8..142 154 32.2 Plus
CG11808-PA 219 CG11808-PA 2..81 79..160 153 39 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16426-PA 336 GI16426-PA 136..336 164..362 599 72.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14817-PA 130 GL14817-PA 32..130 264..362 343 84.8 Plus
Dper\GL12639-PA 276 GL12639-PA 15..276 26..362 287 34.3 Plus
Dper\GL14815-PA 213 GL14815-PA 154..212 155..213 238 78 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15089-PA 375 GA15089-PA 164..375 155..362 695 74.5 Plus
Dpse\GA23822-PA 274 GA23822-PA 61..274 93..362 326 37.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22708-PA 377 GM22708-PA 133..377 117..362 863 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15829-PA 394 GJ15829-PA 194..394 168..362 605 76.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15854-PA 409 GK15854-PA 176..409 162..362 603 67.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17354-PA 370 GE17354-PA 1..370 1..362 947 86.1 Plus

GH15549.hyp Sequence

Translation from 572 to 1660

> GH15549.hyp
MSAARLPYYQRDQEDGHQRRAARGHQRGYYERGSGSGSSRREHSRYSRSR
SRSRSRSRSAERFGQRRRHQKRQSSRYHRDRDSRDRSRDRSRDRSRDRER
DRDRDHSRRSSHYRRSESPSSSDIGHGSNNSQRRGHHASSSSKSELSAVQ
KAAAAAAAATNQVQLAGKSSAASAVGAYYNLDTDEPFDKERIHREMEQKL
REALAREGKVYPPPKPEPPSHPVFANDGSFMELFKKMQEGQKQQATSQLM
QPSVKEVLQQQLVPPEAASTGPALPAIALGAASSAAAPYIAAAAAGKLAP
PPPIVGRRRGGKVLKTGVVAKVKTPNESDVDPKDFWSLYLAEVNKYKSNA
CDTDNGKRPLVK*

GH15549.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18809-PD 362 CG18809-PD 1..362 1..362 1858 100 Plus
CG18809-PC 362 CG18809-PC 1..362 1..362 1858 100 Plus
CG18809-PB 362 CG18809-PB 1..362 1..362 1858 100 Plus
CG18809-PA 362 CG18809-PA 1..362 1..362 1858 100 Plus
Caper-PB 594 CG11266-PB 42..163 24..144 187 38.9 Plus