Clone GH15759 Report

Search the DGRC for GH15759

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:157
Well:59
Vector:pOT2
Associated Gene/Transcriptsxe2-RA
Protein status:GH15759.pep: gold
Preliminary Size:1542
Sequenced Size:1602

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4979 2001-01-01 Release 2 assignment
CG4979 2001-09-19 Blastp of sequenced clone
CG4979 2003-01-01 Sim4 clustering to Release 3
sxe2 2008-04-29 Release 5.5 accounting
sxe2 2008-08-15 Release 5.9 accounting
sxe2 2008-12-18 5.12 accounting

Clone Sequence Records

GH15759.complete Sequence

1602 bp (1602 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058391

> GH15759.complete
AACGATTCGGAGGTGCACGACAGGTTAGCCCAGCTCAGATCAGCTCTGCC
CGGCTCAGAAATTTAACGTTCTTTTAGTGAGCGGCGCGAGCGAGTGATAA
AATTTGGATCGCGAATTGTGGCAGAATTTCGAGAAACAACTGAACACCTT
AAATCGCACTTAAGTGAATTTTAATTGACGCATCGACGTGAATTTTCATC
AGGCTTTTGGCTTTGGCCAGTGCGGTTTATGGGCTCGTTAACGGGAATGC
ATATATCACACTGGTTGCTGTGGACGTGCCTGCTGCTCCTTGGCGCAGCG
GGAACGGATGCGTCAGTTGACTACTTTGCCTATGCTCCCGGTAAGTGCGA
AGTGTCCATTTCGGATGTAATCCAAGGCATGATTACCACTGAGGCTGGCG
TCATCCTCGGAAGGCCCCGTCCTTCGCAAACAAAGCTGCTGCGGTACGAT
CTTTATACGCCCCTCAATCCGGAGGAGCGTCAACTGCTGCGACCAGGAGA
TCTGACCATGCTAAGGAACTCGCACTTCAATCCGAAATGGCCAGTTAGGG
TCTCCATTCATGGCTGGGCGGGAAAGAGTGTCACCTGCTCGAATGCTGCC
ATCAAGGATGCCTACCTGTCCCGGGGCAATTACAACGTCATAATTCTGGA
CTGGAGTCGCCAGTCGTTGGACATCAGCTATCCACGTGTGTCTAAGCAGC
TTCCGTCGATAGCTGCCAATGTGGCCAAAATGTTGCGGTTTCTTCATGAC
AACACAGGAGTTCCCTACGAGCAAATCTATATGATTGGGCACAGCGCCGG
CAGTCACATCTCTGGATTGACTGGAAAGCTGTTAAGGCCGCATCGCCTTG
GTGCTATTTTCGCCTTGGATCCCGCTGGTCTCACTCAACTCAGCCTGGGA
CCCGAAGAGAGGCTGGACGTCAACGATGCCCTGTATGTGGAGTCAATTCA
CACGGATCTAACGCTGCTCGGCAATCCGAGTACTAAGCTCAGTCATGCCT
CCTTCTTTGCCAACTGGGGCCTCGGGCAGCCACATTGTCCCAACGCCACG
GCCACGGAGTTTGATTTTGTCTGCGACCACTTCGCGGCCATGTTCTACTT
TGCCGAGTCAGTCCGGCAACCGAAATCATTTGCCGCATTGCGCTGCAGCT
CAGCGAAATCGGTGCTATCGGCCACCTGCAACTGCAACGTCGGAGGCAGC
GAAAAATATGCAGTCAATACATGCACCGGCAACGAGTTCATGGGCGGTGA
ACCGGCAGTCCCCAAAAGAGGTATCTTTTATCTGAGCACACGGCCGCAGT
CTCCGTATGGCACCAGCGATGGGCTGGTCCACATTAAACGACCCCGGCCG
TCCACTATTCGGGAGACAGCAAACCGGCGTTCAATTGGCTAGATCCAGAT
CAAAGGAAACCACGATTGCTACAGACCAAAAAGTGATGTTTTTTTTTTAA
TATAAATAAGCCTAGACTTAAACAAGAATCTATCCACCCAAAGAATTCGA
ATTAGTCAAAAATTATTTTACATTTAAGTAATCATTCGGTACATCTTAAA
TAAAAGTGGATCACTCCGCAGGTTTATGGAGGTAAAAAAAAAAAAAAAAA
AA

GH15759.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-RA 1640 sxe2-RA 50..1634 1..1585 7925 100 Plus
sxe2.c 1896 sxe2.c 50..1634 1..1585 7925 100 Plus
sxe2.b 1457 sxe2.b 67..1452 200..1585 6930 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11910785..11911823 545..1583 5195 100 Plus
chr3R 27901430 chr3R 11910106..11910409 1..304 1520 100 Plus
chr3R 27901430 chr3R 11910479..11910723 305..549 1210 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:54:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16086184..16087224 545..1585 5205 100 Plus
3R 32079331 3R 16085505..16085808 1..304 1520 100 Plus
3R 32079331 3R 16085878..16086122 305..549 1225 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15827015..15828055 545..1585 5205 100 Plus
3R 31820162 3R 15826336..15826639 1..304 1520 100 Plus
3R 31820162 3R 15826709..15826953 305..549 1225 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:42:02 has no hits.

GH15759.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:42:48 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11910479..11910722 305..548 99 -> Plus
chr3R 11910789..11911823 549..1583 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:45:03 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1164 229..1392 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:07:06 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1164 229..1392 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:47:52 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1164 229..1392 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:37:53 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1164 229..1392 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:08 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1164 229..1392 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:57:08 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1583 1..1583 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:07:06 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1583 1..1583 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:52 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1583 1..1583 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:37:53 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1583 1..1583 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:08 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1583 1..1583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:48 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16085505..16085808 1..304 100 -> Plus
3R 16085878..16086121 305..548 100 -> Plus
3R 16086188..16087222 549..1583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:48 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16085505..16085808 1..304 100 -> Plus
3R 16085878..16086121 305..548 100 -> Plus
3R 16086188..16087222 549..1583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:48 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16085505..16085808 1..304 100 -> Plus
3R 16085878..16086121 305..548 100 -> Plus
3R 16086188..16087222 549..1583 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:52 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11911600..11911843 305..548 100 -> Plus
arm_3R 11911227..11911530 1..304 100 -> Plus
arm_3R 11911910..11912944 549..1583 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:15:07 Download gff for GH15759.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15826336..15826639 1..304 100 -> Plus
3R 15826709..15826952 305..548 100 -> Plus
3R 15827019..15828053 549..1583 100   Plus

GH15759.pep Sequence

Translation from 228 to 1391

> GH15759.pep
MGSLTGMHISHWLLWTCLLLLGAAGTDASVDYFAYAPGKCEVSISDVIQG
MITTEAGVILGRPRPSQTKLLRYDLYTPLNPEERQLLRPGDLTMLRNSHF
NPKWPVRVSIHGWAGKSVTCSNAAIKDAYLSRGNYNVIILDWSRQSLDIS
YPRVSKQLPSIAANVAKMLRFLHDNTGVPYEQIYMIGHSAGSHISGLTGK
LLRPHRLGAIFALDPAGLTQLSLGPEERLDVNDALYVESIHTDLTLLGNP
STKLSHASFFANWGLGQPHCPNATATEFDFVCDHFAAMFYFAESVRQPKS
FAALRCSSAKSVLSATCNCNVGGSEKYAVNTCTGNEFMGGEPAVPKRGIF
YLSTRPQSPYGTSDGLVHIKRPRPSTIRETANRRSIG*

GH15759.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16154-PA 378 GF16154-PA 1..374 1..384 1656 80.8 Plus
Dana\GF14612-PA 377 GF14612-PA 94..354 90..360 419 33.6 Plus
Dana\GF23710-PA 392 GF23710-PA 110..386 65..361 402 34.7 Plus
Dana\GF11422-PA 349 GF11422-PA 2..300 75..386 393 36 Plus
Dana\GF22961-PA 336 GF22961-PA 67..333 75..361 381 32.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16977-PA 387 GG16977-PA 1..387 1..387 1909 91.2 Plus
Dere\GG24841-PA 374 GG24841-PA 91..351 90..360 433 34.3 Plus
Dere\GG21467-PA 392 GG21467-PA 112..389 65..362 401 33.9 Plus
Dere\GG12152-PA 337 GG12152-PA 63..337 71..364 389 32.8 Plus
Dere\GG20643-PA 394 GG20643-PA 5..339 38..373 376 33.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18764-PA 357 GH18764-PA 2..349 33..381 1242 66.2 Plus
Dgri\GH11279-PA 387 GH11279-PA 108..384 63..361 447 34.3 Plus
Dgri\GH13087-PA 333 GH13087-PA 31..310 84..360 411 34 Plus
Dgri\GH18960-PA 345 GH18960-PA 60..339 66..364 386 32.4 Plus
Dgri\GH18958-PA 338 GH18958-PA 59..335 66..361 385 32.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-PB 387 CG4979-PB 1..387 1..387 2052 100 Plus
sxe2-PA 387 CG4979-PA 1..387 1..387 2052 100 Plus
CG4267-PB 374 CG4267-PB 91..351 90..360 414 33.2 Plus
CG4267-PA 374 CG4267-PA 91..351 90..360 414 33.2 Plus
CG6675-PC 386 CG6675-PC 139..381 96..360 406 35.5 Plus
CG6675-PB 390 CG6675-PB 143..385 96..360 406 35.5 Plus
CG6472-PB 389 CG6472-PB 44..328 71..361 381 35.7 Plus
CG17192-PA 337 CG17192-PA 55..337 63..364 371 30.5 Plus
CG6283-PA 339 CG6283-PA 62..336 68..361 358 30.2 Plus
CG6271-PA 341 CG6271-PA 68..338 71..361 354 31.8 Plus
CG6295-PA 338 CG6295-PA 68..335 75..361 353 31 Plus
CG17191-PA 337 CG17191-PA 67..334 75..361 351 31.9 Plus
CG4582-PA 432 CG4582-PA 150..413 91..360 349 33.5 Plus
CG6296-PA 676 CG6296-PA 68..345 68..364 342 30.6 Plus
CG6277-PA 341 CG6277-PA 68..338 71..361 333 31.5 Plus
CG14034-PC 338 CG14034-PC 42..319 75..371 325 30.1 Plus
CG14034-PB 338 CG14034-PB 42..319 75..371 325 30.1 Plus
CG18641-PC 369 CG18641-PC 70..350 71..360 317 28 Plus
CG13282-PB 484 CG13282-PB 68..351 60..360 313 29.3 Plus
CG13282-PA 484 CG13282-PA 68..351 60..360 313 29.3 Plus
CG7367-PD 358 CG7367-PD 104..348 100..360 308 30.3 Plus
CG7367-PB 358 CG7367-PB 104..348 100..360 308 30.3 Plus
CG7367-PC 389 CG7367-PC 135..379 100..360 308 30.3 Plus
CG10357-PC 321 CG10357-PC 27..314 79..361 289 29.2 Plus
CG34447-PA 389 CG34447-PA 40..313 69..360 250 28.7 Plus
CG34447-PB 389 CG34447-PB 40..313 69..360 250 28.7 Plus
CG5966-PA 540 CG5966-PA 80..394 73..360 220 25.7 Plus
CG34448-PA 344 CG34448-PA 70..288 100..318 215 29 Plus
CG5966-PB 436 CG5966-PB 4..290 101..360 215 26.8 Plus
CG6847-PB 1000 CG6847-PB 192..463 106..360 207 27.9 Plus
CG6847-PA 1000 CG6847-PA 192..463 106..360 207 27.9 Plus
CG17292-PD 340 CG17292-PD 48..318 93..369 203 27.4 Plus
CG17292-PC 340 CG17292-PC 48..318 93..369 203 27.4 Plus
CG17292-PB 340 CG17292-PB 48..318 93..369 203 27.4 Plus
CG17292-PA 340 CG17292-PA 48..318 93..369 203 27.4 Plus
CG10116-PA 289 CG10116-PA 41..279 91..360 198 25.1 Plus
CG5665-PB 376 CG5665-PB 86..357 71..361 170 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22654-PA 432 GI22654-PA 65..429 23..386 1242 63.3 Plus
Dmoj\GI24410-PA 388 GI24410-PA 110..384 60..360 435 35.1 Plus
Dmoj\GI14146-PA 382 GI14146-PA 84..360 84..361 423 33.2 Plus
Dmoj\GI23290-PA 339 GI23290-PA 61..336 67..361 392 33.8 Plus
Dmoj\GI21891-PA 340 GI21891-PA 66..338 71..362 390 32.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12219-PA 392 GL12219-PA 3..388 10..384 1359 66.8 Plus
Dper\GL26109-PA 380 GL26109-PA 100..375 63..360 420 34.9 Plus
Dper\GL18712-PA 380 GL18712-PA 103..358 95..360 405 33.8 Plus
Dper\GL23626-PA 339 GL23626-PA 62..336 68..361 376 31.6 Plus
Dper\GL23625-PA 339 GL23625-PA 62..336 68..361 369 31.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18570-PB 398 GA18570-PB 30..394 33..384 1347 68.8 Plus
Dpse\GA19771-PA 380 GA19771-PA 100..375 63..360 420 34.9 Plus
Dpse\GA18069-PA 380 GA18069-PA 103..359 95..361 406 33.7 Plus
Dpse\GA26670-PA 339 GA26670-PA 62..336 68..361 376 32.2 Plus
Dpse\GA26669-PA 339 GA26669-PA 62..336 68..361 363 31 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24283-PA 387 GM24283-PA 1..386 1..386 2027 97.9 Plus
Dsec\GM16157-PA 392 GM16157-PA 112..387 65..360 396 33.1 Plus
Dsec\GM10144-PA 337 GM10144-PA 41..334 51..361 374 31.3 Plus
Dsec\GM21737-PA 394 GM21737-PA 49..333 71..361 374 36 Plus
Dsec\GM10143-PA 339 GM10143-PA 62..336 68..361 368 31.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19073-PA 387 GD19073-PA 1..387 1..387 2033 98.2 Plus
Dsim\GD23140-PA 374 GD23140-PA 91..351 90..360 423 34.2 Plus
Dsim\GD24346-PA 392 GD24346-PA 112..387 65..360 401 33.1 Plus
Dsim\GD18104-PA 337 GD18104-PA 55..337 63..364 386 31.4 Plus
Dsim\GD18102-PA 339 GD18102-PA 62..336 68..361 375 31.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23382-PA 353 GJ23382-PA 14..352 49..386 1254 69.1 Plus
Dvir\GJ17493-PA 375 GJ17493-PA 60..370 71..376 426 32.5 Plus
Dvir\GJ16194-PA 386 GJ16194-PA 140..382 96..360 414 36.1 Plus
Dvir\GJ24145-PA 339 GJ24145-PA 62..336 68..361 377 32.4 Plus
Dvir\GJ24142-PA 341 GJ24142-PA 64..339 68..362 374 32.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13261-PA 338 GK13261-PA 1..330 44..377 1243 66.3 Plus
Dwil\GK14991-PA 304 GK14991-PA 1..277 71..361 433 32.8 Plus
Dwil\GK18697-PA 362 GK18697-PA 118..359 98..361 399 35.8 Plus
Dwil\GK22029-PA 364 GK22029-PA 23..317 67..364 397 34.3 Plus
Dwil\GK12046-PA 340 GK12046-PA 55..337 46..361 382 31.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24368-PA 387 GE24368-PA 1..387 1..387 1888 92.8 Plus
Dyak\GE18062-PA 375 GE18062-PA 92..352 90..360 418 33.5 Plus
Dyak\GE12969-PA 392 GE12969-PA 79..388 35..361 406 32.1 Plus
Dyak\GE10597-PA 349 GE10597-PA 75..346 71..361 390 32 Plus
Dyak\GE10598-PA 337 GE10598-PA 55..337 63..364 385 30.7 Plus

GH15759.hyp Sequence

Translation from 228 to 1391

> GH15759.hyp
MGSLTGMHISHWLLWTCLLLLGAAGTDASVDYFAYAPGKCEVSISDVIQG
MITTEAGVILGRPRPSQTKLLRYDLYTPLNPEERQLLRPGDLTMLRNSHF
NPKWPVRVSIHGWAGKSVTCSNAAIKDAYLSRGNYNVIILDWSRQSLDIS
YPRVSKQLPSIAANVAKMLRFLHDNTGVPYEQIYMIGHSAGSHISGLTGK
LLRPHRLGAIFALDPAGLTQLSLGPEERLDVNDALYVESIHTDLTLLGNP
STKLSHASFFANWGLGQPHCPNATATEFDFVCDHFAAMFYFAESVRQPKS
FAALRCSSAKSVLSATCNCNVGGSEKYAVNTCTGNEFMGGEPAVPKRGIF
YLSTRPQSPYGTSDGLVHIKRPRPSTIRETANRRSIG*

GH15759.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-PB 387 CG4979-PB 1..387 1..387 2052 100 Plus
sxe2-PA 387 CG4979-PA 1..387 1..387 2052 100 Plus
CG4267-PB 374 CG4267-PB 91..351 90..360 414 33.2 Plus
CG4267-PA 374 CG4267-PA 91..351 90..360 414 33.2 Plus
CG6675-PC 386 CG6675-PC 139..381 96..360 406 35.5 Plus