Clone GH15894 Report

Search the DGRC for GH15894

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:158
Well:94
Vector:pOT2
Associated Gene/TranscriptCG2736-RA
Protein status:GH15894.pep: gold
Preliminary Size:1779
Sequenced Size:1807

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2736 2001-01-01 Release 2 assignment
CG2736 2001-11-09 Blastp of sequenced clone
CG2736 2003-01-01 Sim4 clustering to Release 3
CG2736 2008-04-29 Release 5.5 accounting
CG2736 2008-08-15 Release 5.9 accounting
CG2736 2008-12-18 5.12 accounting

Clone Sequence Records

GH15894.complete Sequence

1807 bp (1807 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069143

> GH15894.complete
CGGCCATTGCCGAAAGCGCTTAGAATTTAACTCAAACGGATCGCGTGTTT
TCCCTCGATCGGACGCGATTTACTCCCGTCTCTGGTTTCCGTCAAAGCCG
CCCTTAGTAAAAAATGAAGTCGGTTCAGTGGGTGAAAATATTGCTTTGCC
TGATCCTTGCGTGCGTCAATGTATTCCTCTTCGTGGTGTCTTGGGGAGTG
GACTATCGCATCTTGGTAGCTAGGGAGCATATACGCTTCCGCCAGGAGAT
GCCCACCATGGACAGTTGGATAAACTCGCCATTCGGGAAGCTGAAAAACT
ATGTGTTCAACGTGACCAACGCCGAGGAGTTTCGCAGCGGTCGTGATAGC
AGACTTAAGGTAAAGGAGATCGGCCCCATTGTGTACAGAATCGTGGGGTT
CAACGACATCTTAGATCGCAACGAGACCAACGTTAGGTATCGCAAGCACA
GATACCGCGTAGTGGAATTCCTCCCGGAGGAAAGCGTAGCACCCGACGTC
CTTAACTGGACCATTACCTCCACAAACAACGTTATCCTGGGCGCAGCGAC
GAAAGTCAAGCATACGGCGCCACTTGCAGCCTTCGGTTTTGATGCAGCGC
TCATGATGGAGGATATATTTGTTACAGACAGCGTATACTACTTCCTGTGG
GAGTTCACCCGTCCCCTGCTGCAAACGCTCTCCAGGATCTCGAACATAAG
ACCCAACGTCGCTGTTCTCTACAACGCTCTCAAAGAGAAGGAAGAGGTTT
ACACAGTCAACATCGGCCCTAAGCGCGGCATTGAAAACTTTTTCCGCATC
GAGACGCTTAACGGCGAGGTGATCATCCGGGAACAACTTCCGCACACCCG
TCAGTACGACTCCAACTCTTGCCCCTTTAACGTTTCCGGAGCGCTGGACA
ACTCTCTCTTTCCTCCCTTTGTCCAGCCGGATACGCCGCTGAGCATAGTG
GCTATCGAGTCCTGCCGGGTCCTTCCGCTGACCTACCAGCGTCAGGAGCG
TTACAACGGCCTTGATACCTTCCGCTACACTCTGCTTCAGTCACATCAAA
AGCCTCCCGGCTGCCTGGACACAAGCTACGGTGTCAAGCTACCCGACGGA
ATGTTTGACGTATCCCAGTGTGTGATAAATGACGCCCCCTCTGCGTTTTC
GATGCCACACTTTTACGGAAGCAGCTACAACTGGAGCCAGCACTACGAAG
GATACACACCCAACGCCGAGGATCACGAGCCATACATTTTGCTGGAGCCG
GTCACTGGTATTCCGGTTACGGAGAAATACCGCTTCCAGTCCAACATTCC
TATTCCGGATCTCAGGAGGTTTAGCTCACGCCTAAGCCGGTTTAGCAACA
TGATGATTCCCAGTTTTTGGTATGAGTTCGAAATGGGACAGCTGCCCGGT
TTCGTGACCTCCCTTATGTGGATCAACGTCAACATTGTCCAACACATACA
GCCGTATTGCATGGTTCTTTTTCTGGTCCTGGCCTTGTGGAGTGTCCTAA
AGGCAATTCGAGTGGCCTGCGGCGACCTCGGCTATGTGGTCCTCTTCCGG
AAGTTATGTGGCGATTTGGGCACGGTCACCGCTCTAGAGACCAAGTTCCA
GGCCACTAGTGCTTCCCCCGACGTGGCAGTCAAATAGTGATTTACTTTCT
GGACTGGACCCGTGTATATATGTATGCAAGATTTAGATTTAGGGTAGAGG
TGTCGCTACTGATGAACTATCAGTAGTCCGCCGTTACGCAATATACGATT
TAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

GH15894.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2736.b 2452 CG2736.b 585..2344 1..1760 8800 100 Plus
CG2736.d 2458 CG2736.d 591..2350 1..1760 8800 100 Plus
CG2736.c 2727 CG2736.c 80..1839 1..1760 8800 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20860613..20861338 726..1 3630 100 Minus
chr2R 21145070 chr2R 20860149..20860551 1128..726 2015 100 Minus
chr2R 21145070 chr2R 20859398..20859774 1756..1380 1885 100 Minus
chr2R 21145070 chr2R 20859831..20860082 1380..1129 1260 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:54:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24974646..24975371 726..1 3630 100 Minus
2R 25286936 2R 24974182..24974584 1128..726 2015 100 Minus
2R 25286936 2R 24973427..24973807 1760..1380 1905 100 Minus
2R 25286936 2R 24973864..24974115 1380..1129 1260 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24975845..24976570 726..1 3630 100 Minus
2R 25260384 2R 24975381..24975783 1128..726 2015 100 Minus
2R 25260384 2R 24974626..24975006 1760..1380 1905 100 Minus
2R 25260384 2R 24975063..24975314 1380..1129 1260 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:16:37 has no hits.

GH15894.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:17:19 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20859398..20859774 1380..1756 100 <- Minus
chr2R 20859832..20860082 1129..1379 100 <- Minus
chr2R 20860149..20860551 726..1128 100 <- Minus
chr2R 20860614..20861338 1..725 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:45:13 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
CG2736-RA 1..1524 114..1637 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:14 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
CG2736-RA 1..1524 114..1637 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:39:45 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
CG2736-RA 1..1524 114..1637 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:50 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
CG2736-RA 1..1524 114..1637 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:16:23 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
CG2736-RA 1..1524 114..1637 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:12:15 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
CG2736-RA 1..1756 1..1756 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:14 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
CG2736-RA 1..1756 1..1756 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:45 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
CG2736-RA 1..1726 31..1756 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:50 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
CG2736-RA 1..1756 1..1756 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:16:23 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
CG2736-RA 1..1726 31..1756 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:17:19 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24973431..24973807 1380..1756 100 <- Minus
2R 24973865..24974115 1129..1379 100 <- Minus
2R 24974182..24974584 726..1128 100 <- Minus
2R 24974647..24975371 1..725 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:17:19 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24973431..24973807 1380..1756 100 <- Minus
2R 24973865..24974115 1129..1379 100 <- Minus
2R 24974182..24974584 726..1128 100 <- Minus
2R 24974647..24975371 1..725 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:17:19 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24973431..24973807 1380..1756 100 <- Minus
2R 24973865..24974115 1129..1379 100 <- Minus
2R 24974182..24974584 726..1128 100 <- Minus
2R 24974647..24975371 1..725 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:45 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20860954..20861330 1380..1756 100 <- Minus
arm_2R 20861388..20861638 1129..1379 100 <- Minus
arm_2R 20861705..20862107 726..1128 100 <- Minus
arm_2R 20862170..20862894 1..725 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:36 Download gff for GH15894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24974648..24975024 1380..1756 100 <- Minus
2R 24975082..24975332 1129..1379 100 <- Minus
2R 24975399..24975801 726..1128 100 <- Minus
2R 24975864..24976588 1..725 100   Minus

GH15894.pep Sequence

Translation from 113 to 1636

> GH15894.pep
MKSVQWVKILLCLILACVNVFLFVVSWGVDYRILVAREHIRFRQEMPTMD
SWINSPFGKLKNYVFNVTNAEEFRSGRDSRLKVKEIGPIVYRIVGFNDIL
DRNETNVRYRKHRYRVVEFLPEESVAPDVLNWTITSTNNVILGAATKVKH
TAPLAAFGFDAALMMEDIFVTDSVYYFLWEFTRPLLQTLSRISNIRPNVA
VLYNALKEKEEVYTVNIGPKRGIENFFRIETLNGEVIIREQLPHTRQYDS
NSCPFNVSGALDNSLFPPFVQPDTPLSIVAIESCRVLPLTYQRQERYNGL
DTFRYTLLQSHQKPPGCLDTSYGVKLPDGMFDVSQCVINDAPSAFSMPHF
YGSSYNWSQHYEGYTPNAEDHEPYILLEPVTGIPVTEKYRFQSNIPIPDL
RRFSSRLSRFSNMMIPSFWYEFEMGQLPGFVTSLMWINVNIVQHIQPYCM
VLFLVLALWSVLKAIRVACGDLGYVVLFRKLCGDLGTVTALETKFQATSA
SPDVAVK*

GH15894.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11515-PA 510 GF11515-PA 1..510 1..507 1859 67.7 Plus
Dana\GF11514-PA 520 GF11514-PA 48..484 35..466 286 26.1 Plus
Dana\GF24949-PA 620 GF24949-PA 140..536 61..462 277 25.6 Plus
Dana\GF17933-PA 545 GF17933-PA 60..448 47..426 259 25.1 Plus
Dana\GF13357-PA 607 GF13357-PA 80..524 8..446 254 24.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19867-PA 505 GG19867-PA 1..505 1..507 2527 93.3 Plus
Dere\GG19866-PA 551 GG19866-PA 79..515 35..466 291 25.9 Plus
Dere\GG23026-PA 596 GG23026-PA 79..544 8..465 275 24.1 Plus
Dere\GG16822-PA 555 GG16822-PA 59..449 46..427 270 26 Plus
Dere\GG14547-PA 519 GG14547-PA 44..431 61..458 248 25.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22041-PA 507 GH22041-PA 7..495 6..496 1448 53.8 Plus
Dgri\GH17515-PA 561 GH17515-PA 74..498 45..458 314 26.3 Plus
Dgri\GH22040-PA 520 GH22040-PA 45..447 34..435 281 25.9 Plus
Dgri\GH19840-PA 607 GH19840-PA 97..510 13..425 269 24.7 Plus
Dgri\GH15294-PA 512 GH15294-PA 30..426 61..462 264 24.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2736-PA 507 CG2736-PA 1..507 1..507 2678 100 Plus
emp-PE 508 CG2727-PE 41..469 40..469 287 25.3 Plus
emp-PD 520 CG2727-PD 53..481 40..469 287 25.3 Plus
emp-PA 520 CG2727-PA 53..481 40..469 287 25.3 Plus
emp-PC 520 CG2727-PC 53..481 40..469 287 25.3 Plus
emp-PB 551 CG2727-PB 84..512 40..469 287 25.3 Plus
CG3829-PB 597 CG3829-PB 92..545 14..465 284 23.3 Plus
CG3829-PA 597 CG3829-PA 92..545 14..465 284 23.3 Plus
CG10345-PA 552 CG10345-PA 59..449 46..427 280 25.4 Plus
dsb-PD 615 CG1887-PD 83..521 9..452 258 24.9 Plus
dsb-PF 517 CG1887-PF 34..423 61..452 247 25.5 Plus
santa-maria-PC 563 CG12789-PC 16..502 8..499 243 21.7 Plus
santa-maria-PA 563 CG12789-PA 16..502 8..499 243 21.7 Plus
CG40006-PA 689 CG40006-PA 143..545 60..476 234 23.6 Plus
Snmp2-PB 510 CG7422-PB 61..492 61..490 206 23.2 Plus
pes-PF 555 CG7228-PF 13..422 10..421 197 21.3 Plus
pes-PH 555 CG7228-PH 13..422 10..421 197 21.3 Plus
pes-PG 555 CG7228-PG 13..422 10..421 197 21.3 Plus
pes-PD 555 CG7228-PD 13..422 10..421 197 21.3 Plus
pes-PC 555 CG7228-PC 13..422 10..421 197 21.3 Plus
Snmp2-PD 556 CG7422-PD 279..538 211..490 189 24.9 Plus
Snmp2-PC 556 CG7422-PC 279..538 211..490 189 24.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19128-PA 510 GI19128-PA 7..483 6..483 1549 57.1 Plus
Dmoj\GI19127-PA 521 GI19127-PA 21..460 6..446 299 26.1 Plus
Dmoj\GI20428-PA 590 GI20428-PA 83..514 14..446 292 24.3 Plus
Dmoj\GI10385-PA 546 GI10385-PA 7..479 2..465 274 23 Plus
Dmoj\GI22612-PA 539 GI22612-PA 6..434 11..421 243 25.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10888-PA 501 GL10888-PA 1..485 1..498 1760 66.8 Plus
Dper\GL10887-PA 520 GL10887-PA 21..449 6..435 295 26.3 Plus
Dper\GL27292-PA 556 GL27292-PA 57..478 52..457 259 23.3 Plus
Dper\GL24815-PA 529 GL24815-PA 45..441 61..462 254 24.9 Plus
Dper\GL11204-PA 599 GL11204-PA 79..545 8..465 250 23 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15450-PA 516 GA15450-PA 1..500 1..498 1834 68.4 Plus
Dpse\GA15449-PA 520 GA15449-PA 21..449 6..435 295 26.3 Plus
Dpse\GA10261-PA 556 GA10261-PA 57..478 52..457 256 23.1 Plus
Dpse\GA15107-PA 554 GA15107-PA 70..466 61..462 253 24.7 Plus
Dpse\GA17715-PA 599 GA17715-PA 79..545 8..465 250 23 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11770-PA 507 GM11770-PA 1..507 1..507 2655 97.6 Plus
Dsec\GM15420-PA 552 GM15420-PA 57..449 52..427 276 25.9 Plus
Dsec\GM11919-PA 597 GM11919-PA 79..545 8..465 275 23.5 Plus
Dsec\GM11768-PA 536 GM11768-PA 79..443 35..397 250 26.2 Plus
Dsec\GM14156-PA 614 GM14156-PA 131..526 61..458 238 25 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24901-PA 507 GD24901-PA 1..507 1..507 2664 97.8 Plus
Dsim\GD24900-PA 551 GD24900-PA 79..515 35..466 290 25.9 Plus
Dsim\GD20277-PA 552 GD20277-PA 59..449 46..427 280 25.9 Plus
Dsim\GD11915-PA 597 GD11915-PA 79..545 8..465 272 23.5 Plus
Dsim\GD13426-PA 629 GD13426-PA 145..492 61..403 231 26.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22261-PA 505 GJ22261-PA 7..491 6..493 1598 58.8 Plus
Dvir\GJ22260-PA 522 GJ22260-PA 21..473 6..462 297 26 Plus
Dvir\GJ22846-PA 546 GJ22846-PA 7..449 2..428 290 24.3 Plus
Dvir\GJ20101-PA 586 GJ20101-PA 81..512 14..446 270 23.9 Plus
Dvir\GJ13275-PA 628 GJ13275-PA 95..540 9..462 269 23.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19507-PA 467 GK19507-PA 1..439 46..484 1599 64.9 Plus
Dwil\GK19505-PA 525 GK19505-PA 21..449 6..435 281 25.4 Plus
Dwil\GK19647-PA 601 GK19647-PA 86..498 13..426 281 23.8 Plus
Dwil\GK12615-PA 635 GK12615-PA 105..549 9..465 271 24.9 Plus
Dwil\GK22834-PA 540 GK22834-PA 57..446 52..424 252 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11391-PA 507 GE11391-PA 1..507 1..507 2520 91.5 Plus
Dyak\GE11390-PA 520 GE11390-PA 48..449 35..435 297 26.4 Plus
Dyak\GE14460-PA 598 GE14460-PA 80..546 8..465 286 23.9 Plus
Dyak\GE26139-PA 552 GE26139-PA 59..449 46..427 277 25.8 Plus
Dyak\GE20901-PA 551 GE20901-PA 68..463 61..458 241 25 Plus

GH15894.hyp Sequence

Translation from 113 to 1636

> GH15894.hyp
MKSVQWVKILLCLILACVNVFLFVVSWGVDYRILVAREHIRFRQEMPTMD
SWINSPFGKLKNYVFNVTNAEEFRSGRDSRLKVKEIGPIVYRIVGFNDIL
DRNETNVRYRKHRYRVVEFLPEESVAPDVLNWTITSTNNVILGAATKVKH
TAPLAAFGFDAALMMEDIFVTDSVYYFLWEFTRPLLQTLSRISNIRPNVA
VLYNALKEKEEVYTVNIGPKRGIENFFRIETLNGEVIIREQLPHTRQYDS
NSCPFNVSGALDNSLFPPFVQPDTPLSIVAIESCRVLPLTYQRQERYNGL
DTFRYTLLQSHQKPPGCLDTSYGVKLPDGMFDVSQCVINDAPSAFSMPHF
YGSSYNWSQHYEGYTPNAEDHEPYILLEPVTGIPVTEKYRFQSNIPIPDL
RRFSSRLSRFSNMMIPSFWYEFEMGQLPGFVTSLMWINVNIVQHIQPYCM
VLFLVLALWSVLKAIRVACGDLGYVVLFRKLCGDLGTVTALETKFQATSA
SPDVAVK*

GH15894.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2736-PA 507 CG2736-PA 1..507 1..507 2678 100 Plus
emp-PE 508 CG2727-PE 41..469 40..469 287 25.3 Plus
emp-PD 520 CG2727-PD 53..481 40..469 287 25.3 Plus
CG3829-PB 597 CG3829-PB 92..545 14..465 284 23.3 Plus
CG3829-PA 597 CG3829-PA 92..545 14..465 284 23.3 Plus