Clone GH16063 Report

Search the DGRC for GH16063

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:160
Well:63
Vector:pOT2
Associated Gene/TranscriptFaa-RA
Protein status:GH16063.pep: gold
Preliminary Size:1483
Sequenced Size:1433

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14993 2001-01-01 Release 2 assignment
CG14993 2003-01-01 Sim4 clustering to Release 3
CG14993 2003-02-17 Blastp of sequenced clone
Faa 2008-04-29 Release 5.5 accounting
Faa 2008-08-15 Release 5.9 accounting
Faa 2008-12-18 5.12 accounting

Clone Sequence Records

GH16063.complete Sequence

1433 bp (1433 high quality bases) assembled on 2003-02-17

GenBank Submission: AY069144

> GH16063.complete
CAGCTCTGGCTCCGCGCACGCTTTTTCCGCTTCTCTGCTTCACTTTATTG
ATTCGCACCAACCTGCCCAAGTTTTCCACTTTGAGTGCTTTTAAAATGTC
CCAGAGTTTTGTGCCAGTGCCAGAGAACAGCGATTTTCCGCTGGAAAATC
TACCCTACGCTGTCTTCTCAACCGAAAACAATAAAGTTCACCGTATTTGT
GTGGCCATTGGAGAGCATGTCCTGGACCTGAAAGCTGTCTCGCAGTTGTT
TCCTTTCCAAGTTCAGAAAAGCCTGCAGGCCGAAACTTTGAATGAGCTTA
TGGGATTGGACTTTGAAGCTTGGGATGTGGTAAGAAGCCAGACTCAAAAG
CTATTGACGAAGGGTTCAGAATTGGACCACAATGTGGACTTGAAGGCGGT
TTCCATTGTGCCACAGTCTGAGATCAAGCTGCACCTGCCTGCACAGATTG
GTGACTATACAGACTTTTACTCATCCATCCACCATGCCACCAATGTCGGC
ATTATGTTCCGTGGACCAGACAATGCTCTGATGCCCAACTGGCGCCATCT
GCCGGTGGGCTATCATGGTCGTGCAAGTTCTGTGGTGGTTTCCGGTACTC
CCATCCGTCGTCCTCTTGGTCAAACGTTTCCCGATGGAGCAGAGAAGCCC
GTCTTTGGCGCCTGCAAGCTTCTGGATTTCGAACTAGAAATGGCTTTCTT
TATCGGTGGTAAGGGAAATCAGCTGGGTGAACCCATACGCGTGGATGAGG
CCTGGAAGAACGTGTTCGGTTTCACGCTGATGAACGACTGGAGTGCCAGG
GATATTCAGAAGTGGGAATATGTGCCACTGGGCCCCTTCACCGCAAAGAA
TCTGGGAACCACCATCTCCCCTTGGGTAGTGCCCACAGCTGCCCTGAAGC
CCTTCGTCTTGGACAACTTTCCTCAGGAACCGGAGGTGCTTCCCTATCTG
CGCCAGAACATTCCCTTTAACTTTGATATCAACCTCGAGGTGTCTTTGAA
ACCCGCCGATCAAAACGAAGCGCTTATTTCAAAGTCGAACTTCAAACACC
TTTATTGGACTCCACTGCAGCAAATCGCTCATCACACAGTCACCGGTTGT
AATCTGCGTCCTGGTGATCTGATGGCCTCCGGAACGATCTCCGGTGAGAC
TCCAGACTCGTACGGATCACTTTTAGAGCTCTGCTGGAAGGGCACCAAAA
CATTGGAGCTTCCGGGTGGTAAGACCAGAAAATTCCTCCAGGACTTTGAC
GAGGTCATCATCCGTGGCCACTGCGAAAAGAACGGACTGCGAATCGGATT
CGGGGAGTGTGTGGGTCAGGTGCTGCCTGCCCACCCCGTTCCGCAGTAGG
ACCACTTATTAACATAAGTAAATGAAATAAATTCTATTCAGTCTTCCTGG
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH16063.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
Faa-RA 1470 Faa-RA 24..1423 4..1403 7000 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4071876..4072477 1002..401 3010 100 Minus
chr3L 24539361 chr3L 4071418..4071817 1402..1003 2000 100 Minus
chr3L 24539361 chr3L 4072538..4072755 400..183 1090 100 Minus
chr3L 24539361 chr3L 4073140..4073318 182..4 895 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4072490..4073091 1002..401 3010 100 Minus
3L 28110227 3L 4072031..4072431 1403..1003 2005 100 Minus
3L 28110227 3L 4073152..4073369 400..183 1090 100 Minus
3L 28110227 3L 4073754..4073932 182..4 895 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4072490..4073091 1002..401 3010 100 Minus
3L 28103327 3L 4072031..4072431 1403..1003 2005 100 Minus
3L 28103327 3L 4073152..4073369 400..183 1090 100 Minus
3L 28103327 3L 4073754..4073932 182..4 895 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:49:28 has no hits.

GH16063.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:50:26 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4071418..4071817 1003..1402 100 <- Minus
chr3L 4071876..4072477 401..1002 100 <- Minus
chr3L 4072538..4072755 183..400 100 <- Minus
chr3L 4073140..4073320 1..182 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:45:25 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 1..1254 96..1349 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:50:26 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 1..1254 96..1349 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:55:10 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 1..1254 96..1349 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:39 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 1..1254 96..1349 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:54:47 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 1..1254 96..1349 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:03:31 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 16..1416 1..1402 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:50:25 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 16..1416 1..1402 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:55:10 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 21..1421 1..1402 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:39 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 16..1416 1..1402 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:54:47 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 21..1421 1..1402 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:26 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4072032..4072431 1003..1402 100 <- Minus
3L 4072490..4073091 401..1002 100 <- Minus
3L 4073152..4073369 183..400 100 <- Minus
3L 4073754..4073934 1..182 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:26 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4072032..4072431 1003..1402 100 <- Minus
3L 4072490..4073091 401..1002 100 <- Minus
3L 4073152..4073369 183..400 100 <- Minus
3L 4073754..4073934 1..182 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:26 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4072032..4072431 1003..1402 100 <- Minus
3L 4072490..4073091 401..1002 100 <- Minus
3L 4073152..4073369 183..400 100 <- Minus
3L 4073754..4073934 1..182 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:55:10 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4073152..4073369 183..400 100 <- Minus
arm_3L 4073754..4073934 1..182 99   Minus
arm_3L 4072032..4072431 1003..1402 100 <- Minus
arm_3L 4072490..4073091 401..1002 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:12:14 Download gff for GH16063.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4072032..4072431 1003..1402 100 <- Minus
3L 4072490..4073091 401..1002 100 <- Minus
3L 4073152..4073369 183..400 100 <- Minus
3L 4073754..4073934 1..182 99   Minus

GH16063.hyp Sequence

Translation from 0 to 1348

> GH16063.hyp
TLAPRTLFPLLCFTLLIRTNLPKFSTLSAFKMSQSFVPVPENSDFPLENL
PYAVFSTENNKVHRICVAIGEHVLDLKAVSQLFPFQVQKSLQAETLNELM
GLDFEAWDVVRSQTQKLLTKGSELDHNVDLKAVSIVPQSEIKLHLPAQIG
DYTDFYSSIHHATNVGIMFRGPDNALMPNWRHLPVGYHGRASSVVVSGTP
IRRPLGQTFPDGAEKPVFGACKLLDFELEMAFFIGGKGNQLGEPIRVDEA
WKNVFGFTLMNDWSARDIQKWEYVPLGPFTAKNLGTTISPWVVPTAALKP
FVLDNFPQEPEVLPYLRQNIPFNFDINLEVSLKPADQNEALISKSNFKHL
YWTPLQQIAHHTVTGCNLRPGDLMASGTISGETPDSYGSLLELCWKGTKT
LELPGGKTRKFLQDFDEVIIRGHCEKNGLRIGFGECVGQVLPAHPVPQ*

GH16063.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
Faa-PA 417 CG14993-PA 1..417 32..448 2231 100 Plus

GH16063.pep Sequence

Translation from 95 to 1348

> GH16063.pep
MSQSFVPVPENSDFPLENLPYAVFSTENNKVHRICVAIGEHVLDLKAVSQ
LFPFQVQKSLQAETLNELMGLDFEAWDVVRSQTQKLLTKGSELDHNVDLK
AVSIVPQSEIKLHLPAQIGDYTDFYSSIHHATNVGIMFRGPDNALMPNWR
HLPVGYHGRASSVVVSGTPIRRPLGQTFPDGAEKPVFGACKLLDFELEMA
FFIGGKGNQLGEPIRVDEAWKNVFGFTLMNDWSARDIQKWEYVPLGPFTA
KNLGTTISPWVVPTAALKPFVLDNFPQEPEVLPYLRQNIPFNFDINLEVS
LKPADQNEALISKSNFKHLYWTPLQQIAHHTVTGCNLRPGDLMASGTISG
ETPDSYGSLLELCWKGTKTLELPGGKTRKFLQDFDEVIIRGHCEKNGLRI
GFGECVGQVLPAHPVPQ*

GH16063.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24408-PA 417 GF24408-PA 1..417 1..417 2122 93.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14224-PA 417 GG14224-PA 1..417 1..417 2185 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17004-PA 417 GH17004-PA 1..417 1..417 1943 84.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Faa-PA 417 CG14993-PA 1..417 1..417 2231 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11418-PA 417 GI11418-PA 1..417 1..417 1948 85.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16789-PA 417 GL16789-PA 1..417 1..417 2062 90.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13410-PA 417 GA13410-PA 1..417 1..417 2061 90.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14018-PA 417 GM14018-PA 1..417 1..417 2190 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13297-PA 417 GD13297-PA 1..417 1..417 2211 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13614-PA 417 GJ13614-PA 1..417 1..417 1937 85.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13735-PA 417 GK13735-PA 1..417 1..417 1968 86.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20652-PA 417 GE20652-PA 1..417 1..417 2168 96.6 Plus