Clone GH16104 Report

Search the DGRC for GH16104

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:161
Well:4
Vector:pOT2
Associated Gene/TranscriptCG10494-RA
Protein status:GH16104.pep: gold
Sequenced Size:1772

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10494 2002-11-11 Blastp of sequenced clone
CG10494 2008-04-29 Release 5.5 accounting
CG10494 2008-08-15 Release 5.9 accounting
CG10494 2008-12-18 5.12 accounting

Clone Sequence Records

GH16104.complete Sequence

1772 bp (1772 high quality bases) assembled on 2002-11-11

GenBank Submission: BT001429

> GH16104.complete
ATCAAGCTAAAAAAAAACCGATCAAATATAAATATATATTTATTGATTTC
ATTGCGCGATTTAAGCATAACCATTTGAAAATGAGCAAGTTCTCGCTCTT
CAATGGCAACGATGAGGACGAGCACGAAACGGAGCAGAAATACGCACACC
TTATGAATCTGGGAAATGCGAGTCACTCGGTGTCGGAAAATAGTTCTGGG
AAAGCGAGTCGCTGCAAGTGGACCAGCGCAAAGGTGGAGACCTTTCTGGA
AATCATTCACCAACTTAAACTGCAAGCTGCTCTTCGAAGGCCGCGAAGCA
ATGCAAAGGTGTTTCGTATGGTGTCCAGAGAAATGGCCCGGCGGAACTGC
CCCAAGAGTCCAAAGCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCA
GTATGCGAGAGCTCGGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGG
TGCACGAGTTGATGCAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCG
CTAGAGAGTGACAGCGATATGGAGGCCGACGAGGACCAGTCCGGCATGAT
CTCAGAAACCGAAGGGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTA
ACATCGTCGCCCGCTGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTA
GACCTGATCCACACACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAA
TGCCAAGGTCTTCAAGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCC
ACAAGGGTGCTGAGAAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTG
TACAACAAGGTCAAGAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGC
GATGCGACTGGTCCTGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTG
AAGCGGAAGCCCATCTGAGCAGCGCAAGCGATAGTGATTTCAATGACAGT
GACGAGGAAGAGGGTGATGCATCACAGAGAAGCGGAGCGCACTTTTGGAC
AGACGAAGAGGTTGATTCGTTTCTACTCATCATTCGGGACAATGGTTTCT
TTCGCGCCTTGGATGGCTCAAGGAAGCGCAACTTCCAGACCCTGGTGCAC
ATTTCCAACATCCTGGCTAAGCAGGACATCAAACGCACGCCACACCAGCT
GCGCAATAAACTAAGGCTGCTCTGCAAGCGTCATCGAGAGGCCAAGGAGC
ACGGGCTAGATAATGTACGCATTCTGCCTCGCCACTTTGAGCTTTTCGAT
GAACTGATTCAGGCGCCGCGGGAGAACAGAGAAAGTGCCATCAGCAGGCT
CATTCGCATCAGCAAGCCTTCCTTTCTCAAGCCGCCAGGCAAACCAAGCG
TTCCGCTGGAAAGTGACAGCGACAACTCCAGCTCCACCTGCGATCTCCTA
AGAGCGGCAGCCGATAGCGAGGACTACGTGGACGCCATCGAGATGGAGGC
TGAACCAACGCCGATTGAAGCACTCACTGCAATCATAGAAGGTCAAAAGC
AGCTGCTTGCGCAGATCAAAACTACCAACGAAAGCTTCTTGCGGCAGCAA
CGCGAGCAGCAGCATCAATTTTTGGAACAAGTATCGGAACTGATGCATCG
AGATCGAGAGGAGACCCTGCGCAGGATCAGCGAAATGCTGCAACCGAAGT
AATGGAAACATAGAACTCAAGCTTCTAAAACTTTTATTGAATTGAATTCG
AAGTTATTGCAAAAAGTTGTCATTATTTATATATATTATATGTATGTATT
CTATAAAAAAAAAAAAAAAAAA

GH16104.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-RA 2881 CG10494-RA 69..1823 1..1755 8775 100 Plus
CG10494-RB 2838 CG10494-RB 22..1780 1..1755 8710 99.7 Plus
CG10494.a 1785 CG10494.a 69..1724 1..1656 8250 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17403653..17404421 1754..986 3785 99.5 Minus
chr2R 21145070 chr2R 17404955..17405368 570..157 2055 99.8 Minus
chr2R 21145070 chr2R 17404479..17404896 987..570 2000 98.6 Minus
chr2R 21145070 chr2R 17405428..17405575 156..9 740 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21517154..21517923 1755..986 3850 100 Minus
2R 25286936 2R 21517981..21518398 987..570 2090 100 Minus
2R 25286936 2R 21518457..21518870 570..157 2070 100 Minus
2R 25286936 2R 21518930..21519085 156..1 780 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21518353..21519122 1755..986 3850 100 Minus
2R 25260384 2R 21519180..21519597 987..570 2090 100 Minus
2R 25260384 2R 21519656..21520069 570..157 2070 100 Minus
2R 25260384 2R 21520129..21520284 156..1 780 100 Minus
Blast to na_te.dros performed 2019-03-16 15:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6844 1494..1568 124 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2897 1517..1613 114 61.9 Plus

GH16104.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:50:51 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17403653..17404419 988..1754 99 <- Minus
chr2R 17404479..17404895 571..987 98 <- Minus
chr2R 17404955..17405368 157..570 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:45:27 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 1..1572 81..1652 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:06:15 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 1..1572 81..1652 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:55:41 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 1..1572 81..1652 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:56:07 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 1..1572 81..1652 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:55:21 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 1..1572 81..1652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:25:50 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 22..1775 1..1754 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:06:15 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 22..1775 1..1754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:55:41 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 41..1794 1..1754 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:56:07 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 22..1775 1..1754 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:55:21 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 41..1794 1..1754 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:51 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21517155..21517921 988..1754 100 <- Minus
2R 21517981..21518397 571..987 100 <- Minus
2R 21518457..21518870 157..570 100 <- Minus
2R 21518930..21519085 1..156 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:51 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21517155..21517921 988..1754 100 <- Minus
2R 21517981..21518397 571..987 100 <- Minus
2R 21518457..21518870 157..570 100 <- Minus
2R 21518930..21519085 1..156 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:51 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21517155..21517921 988..1754 100 <- Minus
2R 21517981..21518397 571..987 100 <- Minus
2R 21518457..21518870 157..570 100 <- Minus
2R 21518930..21519085 1..156 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:55:41 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17404660..17405426 988..1754 100 <- Minus
arm_2R 17405486..17405902 571..987 100 <- Minus
arm_2R 17405962..17406375 157..570 100 <- Minus
arm_2R 17406435..17406590 1..156 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:28:33 Download gff for GH16104.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21518354..21519120 988..1754 100 <- Minus
2R 21519180..21519596 571..987 100 <- Minus
2R 21519656..21520069 157..570 100 <- Minus
2R 21520129..21520284 1..156 100   Minus

GH16104.hyp Sequence

Translation from 2 to 1651

> GH16104.hyp
QAKKKPIKYKYIFIDFIARFKHNHLKMSKFSLFNGNDEDEHETEQKYAHL
MNLGNASHSVSENSSGKASRCKWTSAKVETFLEIIHQLKLQAALRRPRSN
AKVFRMVSREMARRNCPKSPKHLRVKFHQMRRQYARARNGGEPFEHFEAV
HELMQGEDVSDLDEEALESDSDMEADEDQSGMISETEGDDALDASGSSVN
IVARCKWAEGEVDLLLDLIHTLGLRAALLQKRNAKVFKLLSKEMAKRNCH
KGAEKLRIKFQQLRRLYNKVKNGTGKTFEHFEAMRLVLDPTEEEAAADAE
AEAHLSSASDSDFNDSDEEEGDASQRSGAHFWTDEEVDSFLLIIRDNGFF
RALDGSRKRNFQTLVHISNILAKQDIKRTPHQLRNKLRLLCKRHREAKEH
GLDNVRILPRHFELFDELIQAPRENRESAISRLIRISKPSFLKPPGKPSV
PLESDSDNSSSTCDLLRAAADSEDYVDAIEMEAEPTPIEALTAIIEGQKQ
LLAQIKTTNESFLRQQREQQHQFLEQVSELMHRDREETLRRISEMLQPK*

GH16104.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-PA 523 CG10494-PA 1..523 27..549 2672 100 Plus
CG10494-PB 444 CG10494-PB 1..444 106..549 2265 100 Plus
CG10494-PB 444 CG10494-PB 83..324 54..297 298 34.8 Plus

GH16104.pep Sequence

Translation from 80 to 1651

> GH16104.pep
MSKFSLFNGNDEDEHETEQKYAHLMNLGNASHSVSENSSGKASRCKWTSA
KVETFLEIIHQLKLQAALRRPRSNAKVFRMVSREMARRNCPKSPKHLRVK
FHQMRRQYARARNGGEPFEHFEAVHELMQGEDVSDLDEEALESDSDMEAD
EDQSGMISETEGDDALDASGSSVNIVARCKWAEGEVDLLLDLIHTLGLRA
ALLQKRNAKVFKLLSKEMAKRNCHKGAEKLRIKFQQLRRLYNKVKNGTGK
TFEHFEAMRLVLDPTEEEAAADAEAEAHLSSASDSDFNDSDEEEGDASQR
SGAHFWTDEEVDSFLLIIRDNGFFRALDGSRKRNFQTLVHISNILAKQDI
KRTPHQLRNKLRLLCKRHREAKEHGLDNVRILPRHFELFDELIQAPRENR
ESAISRLIRISKPSFLKPPGKPSVPLESDSDNSSSTCDLLRAAADSEDYV
DAIEMEAEPTPIEALTAIIEGQKQLLAQIKTTNESFLRQQREQQHQFLEQ
VSELMHRDREETLRRISEMLQPK*

GH16104.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12092-PA 523 GF12092-PA 1..523 1..523 1752 69.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20773-PA 523 GG20773-PA 1..523 1..523 2510 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20053-PA 620 GH20053-PA 114..620 19..523 1260 52.9 Plus
Dgri\GH20053-PA 620 GH20053-PA 41..368 81..403 380 35.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-PA 523 CG10494-PA 1..523 1..523 2672 100 Plus
CG10494-PB 444 CG10494-PB 1..444 80..523 2265 100 Plus
CG10494-PB 444 CG10494-PB 83..324 28..271 298 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20463-PA 628 GI20463-PA 117..628 12..523 1140 50.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17489-PA 500 GL17489-PA 1..497 1..523 1305 57.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24178-PA 503 GA24178-PA 1..500 1..523 1320 57.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15717-PA 523 GM15717-PA 1..523 1..523 2688 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25195-PA 523 GD25195-PA 1..523 1..523 2714 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22312-PA 627 GJ22312-PA 122..627 16..523 1177 52 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20739-PA 544 GK20739-PA 1..540 1..520 1363 54.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13710-PA 523 GE13710-PA 1..523 1..523 2505 91.6 Plus