Clone GH16240 Report

Search the DGRC for GH16240

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:162
Well:40
Vector:pOT2
Associated Gene/Transcriptdrongo-RC
Protein status:GH16240.pep: gold
Preliminary Size:2254
Sequenced Size:2418

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3365 2001-01-01 Release 2 assignment
CG3365 2002-06-07 Blastp of sequenced clone
CG3365 2003-01-01 Sim4 clustering to Release 3
drongo 2008-04-29 Release 5.5 accounting
drongo 2008-08-15 Release 5.9 accounting
drongo 2008-12-18 5.12 accounting

Clone Sequence Records

GH16240.complete Sequence

2418 bp (2418 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119526

> GH16240.complete
TCGCATTCTGCCAGAGGTCTCCGATCAAGAGCGCTTCTCCATTCGAGATT
CAAACGCAGCGCGGTCTGACGCCGCCACATCGAGTGAAATCCATATCGAT
GGCCACATTCACACAGGACGAGATCGACTTCCTGCGCAGCCATGGCAACG
AGCTGTGTGCCAAGACCTGGCTGGGATTGTGGGATCCGAAGCGGGCTGTG
CACCAGCAGGAGCAGCGCGAACTGATGATGGACAAGTATGAGCGGAAGCG
ATACTACCTGGAGCCGGCCAGTCCTCTTAAGTCGCTGGCCAATGCGGTCA
ACCTGAAGTCGTCTGCTCCGGCGACGAACCACACTCAGAATGGCCACCAA
AATGGGTATGCCAGCATCCATTTGACGCCTCCTGCTGCCCAGCGGACCTC
GGCCAATGGATTGCAGAAGGTGGCCAACTCGTCGAGTAACTCTTCTGGAA
AGACCTCATCCTCGATCAGTAGGCCACACTATAATCACCAGAACAACAGC
CAAAACAACAATCACGATGCCTTTGGCCTGGGTGGCGGATTGAGCAGCCT
GAACAGCGCCGGTTCCACATCCACTGGAGCTCTTTCCGACACCAGCAGTT
GTGCTAGCAATGGCTTCGGTGCGGACTGCGACTTTGTGGCTGACTTTGGC
TCGGCCAACATTTTCGACGCCACATCGGCGCGTTCCACAGGATCGCCGGC
GGTGTCGTCCGTGTCCTCAGTGGGTTCCAGCAATGGCTACGCCAAGGTGC
AGCCCATCCGGGCAGCTCATCTCCAGCAGCAACAGCAGTTGCAGCAGCAG
CTGCATCAGCAGCAGCTCCTCAATGGCAATGGTCATCAGGGCACTGAGAA
CTTTGCCGACTTCGATCACGCTCCCATCTACAATGCAGTGGGTGCTCCCT
TGCAGAACGGCCATACGACCAGTCCGCCCAAGGGCGGAAATGCAGCGATG
GCGCCCAGTGAGGATCGATATGCCGCTCTTAAGGATCTCGACGAGCAGCT
GCGAGAACTGAAGGCCAGCGAAAGCGCCACAGAGACGCCCACGCCCACCA
GTGGCAATGTTCAGGCCACAGATGCCTTTGGTGGAGCCCTCAACAACAAT
CCAAATCCCTTCAAGGGCCAGCAACAGCAGCAGCTCAGCAGCCATGTGGT
GAATCCATTCCAGCAGCAGCAACAGCAGCAGCACCAGCAGAATCTCTATG
GCCAGTTGACGCTCATACCAAATGCCTACGGCAGCAGTTCCCAGCAGCAG
ATGGGGCACCATCTCCTCCAGCAGCAGCAGCAGCAACAGCAGAGCTTCTT
CAACTTCAACAACAACGGGTTCGCCATCTCGCAGGGTCTGCCCAACGGCT
GCGGCTTCGGCAGCATGCAACCCGCTCCTGTGATGGCCAACAATCCCTTT
GCAGCCAGCGGCGCCATGAACACCAACAATCCATTCTTATGAGACTCAAC
CCGGGAGAATCCGCCTCGCGCCACCTGGCAGAGGCGCTGAGCCAGCGAAC
AAAGAGCAGACGCGGAGGAACCGAACCGAAATTAGTCCATTTTACTAACA
ATAGCGTTAATCTATGTATACATAATGCACGCCGGAGAGCACTCTTTGTG
TACATAGCCCAAATATGTACACCCGAAAGGCTCCACGCTGACGCTAGTCC
TCGCGGATGGCGGAGGCGGACTGGGGCGTTGATATATTCTTTTACATGGT
AACTCTACTCTAACGTTTACGGATACGGATATTTGTATTTGCCGTTTGCC
CTAGAACTCTATACTTGTACTAAGCGCCCATGAACACTTCATCCACTAAC
ATAGCTACTAATCCTCATCCTAGTGGAGGATGCAGTTGGTCCAGACACTC
TGTTATTTGTTTTATCCATCCTCGTACTTGTCTTTGTCCCATTTAGCACT
TTCGTTGCGGATAAGAACTTTGTCAGTTATTGATTGTGTGGCCTTAATAA
GATTATAAAACTAAATATTATAACGTACGACTATACATATACGGATACAG
ATACAGATTCAGACACAGTTAGTACAGATACAGATATACATATACGCTTT
TGTACCTAATGAATTGCTTCTTGTTTCCATTGCTAATCATCTGCTTTTCG
TGTGCTAATTTTATACACTAGTACGTGCGATATCGGCCGTGCAGATAGAT
TGCTCAGCTCGCGAGTCAAGCCTCTTTTGGTTGCACCCACGGCAGACATT
TGTACATATACTGTCTGATTGTAAGCCTCGTGTAATACCTCCATTAACAC
CACTCCCCCACCACCCATCCATCGAACCCCGAATCCATGACTCAATTCAC
TGCTCACATGTCCATGCCCATGCCTTAACGTGTCAAACATTATCGAAGCC
TTAAAGTTATTTAAAACTACGAAATTTCAATAAAAACAAATAAGAACGCT
AAAAAAAAAAAAAAAAAA

GH16240.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
drongo-RC 2473 drongo-RC 43..2443 1..2401 12005 100 Plus
drongo-RA 2443 drongo-RA 40..2435 1..2401 11905 99.7 Plus
drongo-RG 2974 drongo-RG 1433..2942 892..2401 7550 100 Plus
drongo-RG 2974 drongo-RG 74..964 1..891 4455 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 833438..834434 2400..1404 4940 99.7 Minus
chr2L 23010047 chr2L 836393..837227 893..59 4145 99.8 Minus
chr2L 23010047 chr2L 834824..835143 1404..1085 1600 100 Minus
chr2L 23010047 chr2L 835204..835399 1086..891 950 99 Minus
chr2L 23010047 chr2L 842469..842527 59..1 295 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 833586..834583 2401..1404 4990 100 Minus
2L 23513712 2L 836544..837378 893..59 4175 100 Minus
2L 23513712 2L 834973..835292 1404..1085 1600 100 Minus
2L 23513712 2L 835353..835548 1086..891 980 100 Minus
2L 23513712 2L 842613..842671 59..1 295 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 833586..834583 2401..1404 4990 100 Minus
2L 23513712 2L 836544..837378 893..59 4175 100 Minus
2L 23513712 2L 834973..835292 1404..1085 1600 100 Minus
2L 23513712 2L 835353..835548 1086..891 980 100 Minus
2L 23513712 2L 842613..842671 59..1 295 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:44:48 has no hits.

GH16240.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:45:55 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 833438..833792 2046..2400 100 == Minus
chr2L 833857..834434 1404..1981 99 <- Minus
chr2L 834825..835141 1087..1403 82 <- Minus
chr2L 835204..835398 892..1086 98 <- Minus
chr2L 836395..837227 59..891 94 <- Minus
chr2L 842470..842527 1..58 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:45:33 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
drongo-RB 171..1809 59..1702 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:28:31 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
drongo-RH 171..1554 59..1442 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:01 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
drongo-RH 171..1554 59..1442 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:18:52 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
drongo-RB 171..1809 59..1702 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:40:53 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
drongo-RH 171..1554 59..1442 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:57:26 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
drongo-RC 21..2420 1..2400 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:28:31 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
drongo-RC 21..2420 1..2400 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:01 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
drongo-RC 273..2672 1..2400 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:18:52 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
drongo-RC 21..2420 1..2400 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:40:53 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
drongo-RC 273..2672 1..2400 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:45:55 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
2L 833587..834583 1404..2400 100 <- Minus
2L 834974..835290 1087..1403 100 <- Minus
2L 835353..835547 892..1086 100 <- Minus
2L 836546..837378 59..891 100 <- Minus
2L 842614..842671 1..58 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:45:55 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
2L 833587..834583 1404..2400 100 <- Minus
2L 834974..835290 1087..1403 100 <- Minus
2L 835353..835547 892..1086 100 <- Minus
2L 836546..837378 59..891 100 <- Minus
2L 842614..842671 1..58 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:45:55 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
2L 833587..834583 1404..2400 100 <- Minus
2L 834974..835290 1087..1403 100 <- Minus
2L 835353..835547 892..1086 100 <- Minus
2L 836546..837378 59..891 100 <- Minus
2L 842614..842671 1..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:01 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 833587..834583 1404..2400 100 <- Minus
arm_2L 834974..835290 1087..1403 100 <- Minus
arm_2L 835353..835547 892..1086 100 <- Minus
arm_2L 836546..837378 59..891 100 <- Minus
arm_2L 842614..842671 1..58 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:52:21 Download gff for GH16240.complete
Subject Subject Range Query Range Percent Splice Strand
2L 833587..834583 1404..2400 100 <- Minus
2L 834974..835290 1087..1403 100 <- Minus
2L 835353..835547 892..1086 100 <- Minus
2L 836546..837378 59..891 100 <- Minus
2L 842614..842671 1..58 100   Minus

GH16240.hyp Sequence

Translation from 2 to 1441

> GH16240.hyp
AFCQRSPIKSASPFEIQTQRGLTPPHRVKSISMATFTQDEIDFLRSHGNE
LCAKTWLGLWDPKRAVHQQEQRELMMDKYERKRYYLEPASPLKSLANAVN
LKSSAPATNHTQNGHQNGYASIHLTPPAAQRTSANGLQKVANSSSNSSGK
TSSSISRPHYNHQNNSQNNNHDAFGLGGGLSSLNSAGSTSTGALSDTSSC
ASNGFGADCDFVADFGSANIFDATSARSTGSPAVSSVSSVGSSNGYAKVQ
PIRAAHLQQQQQLQQQLHQQQLLNGNGHQGTENFADFDHAPIYNAVGAPL
QNGHTTSPPKGGNAAMAPSEDRYAALKDLDEQLRELKASESATETPTPTS
GNVQATDAFGGALNNNPNPFKGQQQQQLSSHVVNPFQQQQQQQHQQNLYG
QLTLIPNAYGSSSQQQMGHHLLQQQQQQQQSFFNFNNNGFAISQGLPNGC
GFGSMQPAPVMANNPFAASGAMNTNNPFL*

GH16240.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
drongo-PH 517 CG3365-PH 58..517 20..479 2416 100 Plus
drongo-PI 514 CG3365-PI 58..507 20..469 2357 99.8 Plus
drongo-PC 447 CG3365-PC 1..447 33..479 2348 100 Plus
drongo-PF 673 CG3365-PF 58..479 20..398 1468 72 Plus
drongo-PG 603 CG3365-PG 1..409 33..398 1400 71.1 Plus
drongo-PF 673 CG3365-PF 468..673 261..479 971 86.3 Plus

GH16240.pep Sequence

Translation from 98 to 1441

> GH16240.pep
MATFTQDEIDFLRSHGNELCAKTWLGLWDPKRAVHQQEQRELMMDKYERK
RYYLEPASPLKSLANAVNLKSSAPATNHTQNGHQNGYASIHLTPPAAQRT
SANGLQKVANSSSNSSGKTSSSISRPHYNHQNNSQNNNHDAFGLGGGLSS
LNSAGSTSTGALSDTSSCASNGFGADCDFVADFGSANIFDATSARSTGSP
AVSSVSSVGSSNGYAKVQPIRAAHLQQQQQLQQQLHQQQLLNGNGHQGTE
NFADFDHAPIYNAVGAPLQNGHTTSPPKGGNAAMAPSEDRYAALKDLDEQ
LRELKASESATETPTPTSGNVQATDAFGGALNNNPNPFKGQQQQQLSSHV
VNPFQQQQQQQHQQNLYGQLTLIPNAYGSSSQQQMGHHLLQQQQQQQQSF
FNFNNNGFAISQGLPNGCGFGSMQPAPVMANNPFAASGAMNTNNPFL*

GH16240.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14821-PA 835 GF14821-PA 199..466 1..270 865 81.1 Plus
Dana\GF14821-PA 835 GF14821-PA 635..835 251..447 612 76.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24625-PA 772 GG24625-PA 182..444 1..270 1005 91.5 Plus
Dere\GG24625-PA 772 GG24625-PA 566..772 229..447 713 78.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10492-PA 750 GH10492-PA 69..328 1..263 794 71.3 Plus
Dgri\GH10492-PA 750 GH10492-PA 556..750 285..447 487 61.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
drongo-PH 517 CG3365-PH 71..517 1..447 2348 100 Plus
drongo-PC 447 CG3365-PC 1..447 1..447 2348 100 Plus
drongo-PI 514 CG3365-PI 71..507 1..437 2289 99.8 Plus
drongo-PG 603 CG3365-PG 1..409 1..366 1400 71.1 Plus
drongo-PF 673 CG3365-PF 71..479 1..366 1400 71.1 Plus
drongo-PG 603 CG3365-PG 398..603 229..447 971 86.3 Plus
drongo-PF 673 CG3365-PF 468..673 229..447 971 86.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18010-PA 413 GI18010-PA 69..412 1..338 1008 69.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18630-PA 868 GL18630-PA 192..483 1..265 731 66.1 Plus
Dper\GL18630-PA 868 GL18630-PA 649..868 226..447 596 69.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17408-PA 865 GA17408-PA 192..484 1..265 680 65.4 Plus
Dpse\GA17408-PA 865 GA17408-PA 647..865 226..447 582 68.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16640-PA 1098 GM16640-PA 503..770 1..270 1358 95.6 Plus
Dsec\GM16640-PA 1098 GM16640-PA 894..1098 229..447 752 80.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22938-PA 665 GD22938-PA 71..338 1..270 1339 95.6 Plus
Dsim\GD22938-PA 665 GD22938-PA 462..665 229..447 751 80.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19635-PA 558 GJ19635-PA 69..558 1..447 1248 63 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24619-PA 514 GK24619-PA 74..514 1..447 1172 67.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15887-PA 719 GE15887-PA 214..479 1..270 1077 93.7 Plus
Dyak\GE15887-PA 719 GE15887-PA 681..719 409..447 212 100 Plus