BDGP Sequence Production Resources |
Search the DGRC for GH16240
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 162 |
Well: | 40 |
Vector: | pOT2 |
Associated Gene/Transcript | drongo-RC |
Protein status: | GH16240.pep: gold |
Preliminary Size: | 2254 |
Sequenced Size: | 2418 |
Gene | Date | Evidence |
---|---|---|
CG3365 | 2001-01-01 | Release 2 assignment |
CG3365 | 2002-06-07 | Blastp of sequenced clone |
CG3365 | 2003-01-01 | Sim4 clustering to Release 3 |
drongo | 2008-04-29 | Release 5.5 accounting |
drongo | 2008-08-15 | Release 5.9 accounting |
drongo | 2008-12-18 | 5.12 accounting |
2418 bp (2418 high quality bases) assembled on 2002-06-07
GenBank Submission: AY119526
> GH16240.complete TCGCATTCTGCCAGAGGTCTCCGATCAAGAGCGCTTCTCCATTCGAGATT CAAACGCAGCGCGGTCTGACGCCGCCACATCGAGTGAAATCCATATCGAT GGCCACATTCACACAGGACGAGATCGACTTCCTGCGCAGCCATGGCAACG AGCTGTGTGCCAAGACCTGGCTGGGATTGTGGGATCCGAAGCGGGCTGTG CACCAGCAGGAGCAGCGCGAACTGATGATGGACAAGTATGAGCGGAAGCG ATACTACCTGGAGCCGGCCAGTCCTCTTAAGTCGCTGGCCAATGCGGTCA ACCTGAAGTCGTCTGCTCCGGCGACGAACCACACTCAGAATGGCCACCAA AATGGGTATGCCAGCATCCATTTGACGCCTCCTGCTGCCCAGCGGACCTC GGCCAATGGATTGCAGAAGGTGGCCAACTCGTCGAGTAACTCTTCTGGAA AGACCTCATCCTCGATCAGTAGGCCACACTATAATCACCAGAACAACAGC CAAAACAACAATCACGATGCCTTTGGCCTGGGTGGCGGATTGAGCAGCCT GAACAGCGCCGGTTCCACATCCACTGGAGCTCTTTCCGACACCAGCAGTT GTGCTAGCAATGGCTTCGGTGCGGACTGCGACTTTGTGGCTGACTTTGGC TCGGCCAACATTTTCGACGCCACATCGGCGCGTTCCACAGGATCGCCGGC GGTGTCGTCCGTGTCCTCAGTGGGTTCCAGCAATGGCTACGCCAAGGTGC AGCCCATCCGGGCAGCTCATCTCCAGCAGCAACAGCAGTTGCAGCAGCAG CTGCATCAGCAGCAGCTCCTCAATGGCAATGGTCATCAGGGCACTGAGAA CTTTGCCGACTTCGATCACGCTCCCATCTACAATGCAGTGGGTGCTCCCT TGCAGAACGGCCATACGACCAGTCCGCCCAAGGGCGGAAATGCAGCGATG GCGCCCAGTGAGGATCGATATGCCGCTCTTAAGGATCTCGACGAGCAGCT GCGAGAACTGAAGGCCAGCGAAAGCGCCACAGAGACGCCCACGCCCACCA GTGGCAATGTTCAGGCCACAGATGCCTTTGGTGGAGCCCTCAACAACAAT CCAAATCCCTTCAAGGGCCAGCAACAGCAGCAGCTCAGCAGCCATGTGGT GAATCCATTCCAGCAGCAGCAACAGCAGCAGCACCAGCAGAATCTCTATG GCCAGTTGACGCTCATACCAAATGCCTACGGCAGCAGTTCCCAGCAGCAG ATGGGGCACCATCTCCTCCAGCAGCAGCAGCAGCAACAGCAGAGCTTCTT CAACTTCAACAACAACGGGTTCGCCATCTCGCAGGGTCTGCCCAACGGCT GCGGCTTCGGCAGCATGCAACCCGCTCCTGTGATGGCCAACAATCCCTTT GCAGCCAGCGGCGCCATGAACACCAACAATCCATTCTTATGAGACTCAAC CCGGGAGAATCCGCCTCGCGCCACCTGGCAGAGGCGCTGAGCCAGCGAAC AAAGAGCAGACGCGGAGGAACCGAACCGAAATTAGTCCATTTTACTAACA ATAGCGTTAATCTATGTATACATAATGCACGCCGGAGAGCACTCTTTGTG TACATAGCCCAAATATGTACACCCGAAAGGCTCCACGCTGACGCTAGTCC TCGCGGATGGCGGAGGCGGACTGGGGCGTTGATATATTCTTTTACATGGT AACTCTACTCTAACGTTTACGGATACGGATATTTGTATTTGCCGTTTGCC CTAGAACTCTATACTTGTACTAAGCGCCCATGAACACTTCATCCACTAAC ATAGCTACTAATCCTCATCCTAGTGGAGGATGCAGTTGGTCCAGACACTC TGTTATTTGTTTTATCCATCCTCGTACTTGTCTTTGTCCCATTTAGCACT TTCGTTGCGGATAAGAACTTTGTCAGTTATTGATTGTGTGGCCTTAATAA GATTATAAAACTAAATATTATAACGTACGACTATACATATACGGATACAG ATACAGATTCAGACACAGTTAGTACAGATACAGATATACATATACGCTTT TGTACCTAATGAATTGCTTCTTGTTTCCATTGCTAATCATCTGCTTTTCG TGTGCTAATTTTATACACTAGTACGTGCGATATCGGCCGTGCAGATAGAT TGCTCAGCTCGCGAGTCAAGCCTCTTTTGGTTGCACCCACGGCAGACATT TGTACATATACTGTCTGATTGTAAGCCTCGTGTAATACCTCCATTAACAC CACTCCCCCACCACCCATCCATCGAACCCCGAATCCATGACTCAATTCAC TGCTCACATGTCCATGCCCATGCCTTAACGTGTCAAACATTATCGAAGCC TTAAAGTTATTTAAAACTACGAAATTTCAATAAAAACAAATAAGAACGCT AAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
drongo-RC | 2473 | drongo-RC | 43..2443 | 1..2401 | 12005 | 100 | Plus |
drongo-RA | 2443 | drongo-RA | 40..2435 | 1..2401 | 11905 | 99.7 | Plus |
drongo-RG | 2974 | drongo-RG | 1433..2942 | 892..2401 | 7550 | 100 | Plus |
drongo-RG | 2974 | drongo-RG | 74..964 | 1..891 | 4455 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 833438..834434 | 2400..1404 | 4940 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 836393..837227 | 893..59 | 4145 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 834824..835143 | 1404..1085 | 1600 | 100 | Minus |
chr2L | 23010047 | chr2L | 835204..835399 | 1086..891 | 950 | 99 | Minus |
chr2L | 23010047 | chr2L | 842469..842527 | 59..1 | 295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 833586..834583 | 2401..1404 | 4990 | 100 | Minus |
2L | 23513712 | 2L | 836544..837378 | 893..59 | 4175 | 100 | Minus |
2L | 23513712 | 2L | 834973..835292 | 1404..1085 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 835353..835548 | 1086..891 | 980 | 100 | Minus |
2L | 23513712 | 2L | 842613..842671 | 59..1 | 295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 833586..834583 | 2401..1404 | 4990 | 100 | Minus |
2L | 23513712 | 2L | 836544..837378 | 893..59 | 4175 | 100 | Minus |
2L | 23513712 | 2L | 834973..835292 | 1404..1085 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 835353..835548 | 1086..891 | 980 | 100 | Minus |
2L | 23513712 | 2L | 842613..842671 | 59..1 | 295 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 833438..833792 | 2046..2400 | 100 | == | Minus |
chr2L | 833857..834434 | 1404..1981 | 99 | <- | Minus |
chr2L | 834825..835141 | 1087..1403 | 82 | <- | Minus |
chr2L | 835204..835398 | 892..1086 | 98 | <- | Minus |
chr2L | 836395..837227 | 59..891 | 94 | <- | Minus |
chr2L | 842470..842527 | 1..58 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
drongo-RB | 171..1809 | 59..1702 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
drongo-RH | 171..1554 | 59..1442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
drongo-RH | 171..1554 | 59..1442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
drongo-RB | 171..1809 | 59..1702 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
drongo-RH | 171..1554 | 59..1442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
drongo-RC | 21..2420 | 1..2400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
drongo-RC | 21..2420 | 1..2400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
drongo-RC | 273..2672 | 1..2400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
drongo-RC | 21..2420 | 1..2400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
drongo-RC | 273..2672 | 1..2400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 833587..834583 | 1404..2400 | 100 | <- | Minus |
2L | 834974..835290 | 1087..1403 | 100 | <- | Minus |
2L | 835353..835547 | 892..1086 | 100 | <- | Minus |
2L | 836546..837378 | 59..891 | 100 | <- | Minus |
2L | 842614..842671 | 1..58 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 833587..834583 | 1404..2400 | 100 | <- | Minus |
2L | 834974..835290 | 1087..1403 | 100 | <- | Minus |
2L | 835353..835547 | 892..1086 | 100 | <- | Minus |
2L | 836546..837378 | 59..891 | 100 | <- | Minus |
2L | 842614..842671 | 1..58 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 833587..834583 | 1404..2400 | 100 | <- | Minus |
2L | 834974..835290 | 1087..1403 | 100 | <- | Minus |
2L | 835353..835547 | 892..1086 | 100 | <- | Minus |
2L | 836546..837378 | 59..891 | 100 | <- | Minus |
2L | 842614..842671 | 1..58 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 833587..834583 | 1404..2400 | 100 | <- | Minus |
arm_2L | 834974..835290 | 1087..1403 | 100 | <- | Minus |
arm_2L | 835353..835547 | 892..1086 | 100 | <- | Minus |
arm_2L | 836546..837378 | 59..891 | 100 | <- | Minus |
arm_2L | 842614..842671 | 1..58 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 833587..834583 | 1404..2400 | 100 | <- | Minus |
2L | 834974..835290 | 1087..1403 | 100 | <- | Minus |
2L | 835353..835547 | 892..1086 | 100 | <- | Minus |
2L | 836546..837378 | 59..891 | 100 | <- | Minus |
2L | 842614..842671 | 1..58 | 100 | Minus |
Translation from 2 to 1441
> GH16240.hyp AFCQRSPIKSASPFEIQTQRGLTPPHRVKSISMATFTQDEIDFLRSHGNE LCAKTWLGLWDPKRAVHQQEQRELMMDKYERKRYYLEPASPLKSLANAVN LKSSAPATNHTQNGHQNGYASIHLTPPAAQRTSANGLQKVANSSSNSSGK TSSSISRPHYNHQNNSQNNNHDAFGLGGGLSSLNSAGSTSTGALSDTSSC ASNGFGADCDFVADFGSANIFDATSARSTGSPAVSSVSSVGSSNGYAKVQ PIRAAHLQQQQQLQQQLHQQQLLNGNGHQGTENFADFDHAPIYNAVGAPL QNGHTTSPPKGGNAAMAPSEDRYAALKDLDEQLRELKASESATETPTPTS GNVQATDAFGGALNNNPNPFKGQQQQQLSSHVVNPFQQQQQQQHQQNLYG QLTLIPNAYGSSSQQQMGHHLLQQQQQQQQSFFNFNNNGFAISQGLPNGC GFGSMQPAPVMANNPFAASGAMNTNNPFL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
drongo-PH | 517 | CG3365-PH | 58..517 | 20..479 | 2416 | 100 | Plus |
drongo-PI | 514 | CG3365-PI | 58..507 | 20..469 | 2357 | 99.8 | Plus |
drongo-PC | 447 | CG3365-PC | 1..447 | 33..479 | 2348 | 100 | Plus |
drongo-PF | 673 | CG3365-PF | 58..479 | 20..398 | 1468 | 72 | Plus |
drongo-PG | 603 | CG3365-PG | 1..409 | 33..398 | 1400 | 71.1 | Plus |
drongo-PF | 673 | CG3365-PF | 468..673 | 261..479 | 971 | 86.3 | Plus |
Translation from 98 to 1441
> GH16240.pep MATFTQDEIDFLRSHGNELCAKTWLGLWDPKRAVHQQEQRELMMDKYERK RYYLEPASPLKSLANAVNLKSSAPATNHTQNGHQNGYASIHLTPPAAQRT SANGLQKVANSSSNSSGKTSSSISRPHYNHQNNSQNNNHDAFGLGGGLSS LNSAGSTSTGALSDTSSCASNGFGADCDFVADFGSANIFDATSARSTGSP AVSSVSSVGSSNGYAKVQPIRAAHLQQQQQLQQQLHQQQLLNGNGHQGTE NFADFDHAPIYNAVGAPLQNGHTTSPPKGGNAAMAPSEDRYAALKDLDEQ LRELKASESATETPTPTSGNVQATDAFGGALNNNPNPFKGQQQQQLSSHV VNPFQQQQQQQHQQNLYGQLTLIPNAYGSSSQQQMGHHLLQQQQQQQQSF FNFNNNGFAISQGLPNGCGFGSMQPAPVMANNPFAASGAMNTNNPFL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14821-PA | 835 | GF14821-PA | 199..466 | 1..270 | 865 | 81.1 | Plus |
Dana\GF14821-PA | 835 | GF14821-PA | 635..835 | 251..447 | 612 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24625-PA | 772 | GG24625-PA | 182..444 | 1..270 | 1005 | 91.5 | Plus |
Dere\GG24625-PA | 772 | GG24625-PA | 566..772 | 229..447 | 713 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10492-PA | 750 | GH10492-PA | 69..328 | 1..263 | 794 | 71.3 | Plus |
Dgri\GH10492-PA | 750 | GH10492-PA | 556..750 | 285..447 | 487 | 61.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
drongo-PH | 517 | CG3365-PH | 71..517 | 1..447 | 2348 | 100 | Plus |
drongo-PC | 447 | CG3365-PC | 1..447 | 1..447 | 2348 | 100 | Plus |
drongo-PI | 514 | CG3365-PI | 71..507 | 1..437 | 2289 | 99.8 | Plus |
drongo-PG | 603 | CG3365-PG | 1..409 | 1..366 | 1400 | 71.1 | Plus |
drongo-PF | 673 | CG3365-PF | 71..479 | 1..366 | 1400 | 71.1 | Plus |
drongo-PG | 603 | CG3365-PG | 398..603 | 229..447 | 971 | 86.3 | Plus |
drongo-PF | 673 | CG3365-PF | 468..673 | 229..447 | 971 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18010-PA | 413 | GI18010-PA | 69..412 | 1..338 | 1008 | 69.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18630-PA | 868 | GL18630-PA | 192..483 | 1..265 | 731 | 66.1 | Plus |
Dper\GL18630-PA | 868 | GL18630-PA | 649..868 | 226..447 | 596 | 69.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17408-PA | 865 | GA17408-PA | 192..484 | 1..265 | 680 | 65.4 | Plus |
Dpse\GA17408-PA | 865 | GA17408-PA | 647..865 | 226..447 | 582 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16640-PA | 1098 | GM16640-PA | 503..770 | 1..270 | 1358 | 95.6 | Plus |
Dsec\GM16640-PA | 1098 | GM16640-PA | 894..1098 | 229..447 | 752 | 80.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22938-PA | 665 | GD22938-PA | 71..338 | 1..270 | 1339 | 95.6 | Plus |
Dsim\GD22938-PA | 665 | GD22938-PA | 462..665 | 229..447 | 751 | 80.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19635-PA | 558 | GJ19635-PA | 69..558 | 1..447 | 1248 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24619-PA | 514 | GK24619-PA | 74..514 | 1..447 | 1172 | 67.5 | Plus |