Clone GH16244 Report

Search the DGRC for GH16244

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:162
Well:44
Vector:pOT2
Associated Gene/TranscriptCG17999-RA
Protein status:GH16244.pep: gold
Preliminary Size:1712
Sequenced Size:1689

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17999 2001-01-01 Release 2 assignment
CG17999 2001-07-04 Blastp of sequenced clone
CG17999 2003-01-01 Sim4 clustering to Release 3
CG17999 2008-04-29 Release 5.5 accounting
CG17999 2008-08-15 Release 5.9 accounting
CG17999 2008-12-18 5.12 accounting

Clone Sequence Records

GH16244.complete Sequence

1689 bp (1689 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051509

> GH16244.complete
GACGTTGGAAAACACTATGAGCTGTGAGGTGCACTACGATGCCGCTTCGC
GGACTTGGTTTGGACCGCGTGGCAAGGACTTCTACGGTCCAGAAATGACC
CTGGGCGAGGTCATCATGCGCGTGCTGCAGATTAACGCAGATCAGGTGAT
GCAAATATGTGATACCACGGGTCAGGAGCTCACCGGTGCTCAGTTGGCTC
AGCAGAGTGCCCGCATAGCACAGGCCTTCAAGAGATTGGGTCTACGGAGG
GGCGATGTCGTTGGCATATCGGCCAATAACTCGACGTATTTAACCAGTGT
GATAATTGCGGCTTTGCTCCGTGGCATCCCCATTAATCCACTGCATCCGG
AGTTTACTGAAGAGACTGTCAAATACATGTACGACATTACCGAGCCGAAG
GTTATCTTCTGCGATGTAGAAAACTACCATATAATAAAGACGGTCAATGG
AAAACTACAAAATCCCGCCAAGATCTATCTGGTCAATGGAAAATTAGAAG
GAGTGCTGGACATAAGCGAGATGCTAAATGATGAAGACAGCATTACAGCA
GCCGCGTATGTTCCTTGTCCAAAACTACACGGCGATCACACCGCATTCAT
TGTGTGCTCCTCGGGAACCACGGGAATGCCAAAAGGCGTCACTCGATCCC
ATCGAAGTTTACTCTGTAACTGCAAGAATCCGAACACCTACACCCGAGAT
AGCGTGCTGCTCTCGTTCAGTCCCCTCTACTGGATATCGGGAACCATAAT
CCTTCTGGCCTCGCTCCTCAATGGTTGTCGTCGCATAATCACCAATCGTC
CATACAGCGTGGAGTACCTGCTCCAACTGGTGGCGAGGCACAAGGTGACC
TTTCTGTTCCTGGCCTCCCATCAGATTGCCCTGCTATCCAAGCATGACAG
TGATGTGATGGAACTGAAGGCCCAGCTCCAATCCATACGGGTTTTGATTG
GAGCTGGATCTAAAGTGTGCAAGGCGGTGTGTCGCAGGATGTACGAGTTG
ATTGGTAACCAGAGATTTGTTGTGGGCTATGGGCTGTCCGAGATGGGCGG
ACTGAGCAAAAACGTGGGTGGACCAGTGGGTTGCGAGGGCAAGGTTATGC
GGAATGTTGAGCTGCGGGTGCTGGACAAACTGAAGATGCCACTTGGCATC
AATGAAGTGGGCATCATCTACGCCCGTTTGCGGTTCAAGTGGGCAGGCTA
CTACCGAAACCCGGAGGCCACTCGAAGAGCCCTCAGCTCCGACGGCATGT
GGTTTCGCACGGGAGACATCGGTTACCTTGACAGCGAGGGGTATCTGTAC
ATCCAGACCCGTGACACCGATGTCTTCAAGTTCAACAACTTCCAGATCTA
TCCCGAGCAGATCGAGGAGTTCATCCTCAGATTGCCCGGCGTCAGTGAGG
CCTGTGTCTTCGGCATACCCGACGCGGTGAGCACCAATCTTACGGCCTGC
GCCGTGGTCCGCACCAAAAGTCCGGAGGGGGAACGCCTTACGGCGGATCA
CATCCGAAACATTGTGGAACACCACTTGAGCGGAGCCTACCACATTCGAG
GAGGTGTGTATTTCATCGACAGTCTGCCAAAAACACCCAATGATAAACTG
CAGAGGCGAAAGGTCCTGGGCCTCGTACAGCAGCTCGAACTTAAAGCTGA
ATAAAAAATAGTTACCACATCAAAAAAAAAAAAAAAAAA

GH16244.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17999-RA 1858 CG17999-RA 163..1833 1..1671 8355 100 Plus
CG9993-RA 1881 CG9993-RA 1329..1458 1239..1368 230 78.4 Plus
CG9993.a 2089 CG9993.a 1537..1666 1239..1368 230 78.4 Plus
CG9993-RA 1881 CG9993-RA 341..441 251..351 145 76.2 Plus
CG9993.a 2089 CG9993.a 549..649 251..351 145 76.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16734566..16735558 1671..679 4965 100 Minus
chr2R 21145070 chr2R 16736144..16736505 362..1 1810 100 Minus
chr2R 21145070 chr2R 16735875..16736076 562..361 995 99.5 Minus
chr2R 21145070 chr2R 16735697..16735819 678..556 615 100 Minus
chr2R 21145070 chr2R 16737018..16737237 1458..1239 290 75.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20847980..20848972 1671..679 4965 100 Minus
2R 25286936 2R 20849558..20849919 362..1 1810 100 Minus
2R 25286936 2R 20849289..20849490 562..361 995 99.5 Minus
2R 25286936 2R 20849111..20849233 678..556 615 100 Minus
2R 25286936 2R 20850432..20850651 1458..1239 290 75.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20849179..20850171 1671..679 4965 100 Minus
2R 25260384 2R 20850757..20851118 362..1 1810 100 Minus
2R 25260384 2R 20850488..20850689 562..361 995 99.5 Minus
2R 25260384 2R 20850310..20850432 678..556 615 100 Minus
2R 25260384 2R 20851721..20851850 1368..1239 230 78.4 Minus
2R 25260384 2R 20852916..20853016 351..251 145 76.2 Minus
Blast to na_te.dros performed on 2019-03-16 15:55:24 has no hits.

GH16244.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:56:08 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16734566..16735558 679..1671 100 <- Minus
chr2R 16735697..16735819 556..678 100 <- Minus
chr2R 16735882..16736074 363..555 100 <- Minus
chr2R 16736144..16736505 1..362 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:45:35 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 1..1638 17..1654 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:09 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 1..1638 17..1654 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:57:27 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 1..1638 17..1654 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:59:13 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 1..1638 17..1654 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:56:45 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 1..1638 17..1654 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:59 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 1..1671 1..1671 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:09 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 1..1671 1..1671 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:57:27 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 21..1691 1..1671 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:59:14 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 1..1671 1..1671 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:56:45 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 21..1691 1..1671 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:08 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20849558..20849919 1..362 100   Minus
2R 20847980..20848972 679..1671 100 <- Minus
2R 20849111..20849233 556..678 100 <- Minus
2R 20849296..20849488 363..555 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:08 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20849558..20849919 1..362 100   Minus
2R 20847980..20848972 679..1671 100 <- Minus
2R 20849111..20849233 556..678 100 <- Minus
2R 20849296..20849488 363..555 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:08 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20849558..20849919 1..362 100   Minus
2R 20847980..20848972 679..1671 100 <- Minus
2R 20849111..20849233 556..678 100 <- Minus
2R 20849296..20849488 363..555 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:57:27 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16735485..16736477 679..1671 100 <- Minus
arm_2R 16736616..16736738 556..678 100 <- Minus
arm_2R 16736801..16736993 363..555 100 <- Minus
arm_2R 16737063..16737424 1..362 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:37:04 Download gff for GH16244.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20850495..20850687 363..555 100 <- Minus
2R 20849179..20850171 679..1671 100 <- Minus
2R 20850310..20850432 556..678 100 <- Minus
2R 20850757..20851118 1..362 100   Minus

GH16244.hyp Sequence

Translation from 0 to 1653

> GH16244.hyp
TLENTMSCEVHYDAASRTWFGPRGKDFYGPEMTLGEVIMRVLQINADQVM
QICDTTGQELTGAQLAQQSARIAQAFKRLGLRRGDVVGISANNSTYLTSV
IIAALLRGIPINPLHPEFTEETVKYMYDITEPKVIFCDVENYHIIKTVNG
KLQNPAKIYLVNGKLEGVLDISEMLNDEDSITAAAYVPCPKLHGDHTAFI
VCSSGTTGMPKGVTRSHRSLLCNCKNPNTYTRDSVLLSFSPLYWISGTII
LLASLLNGCRRIITNRPYSVEYLLQLVARHKVTFLFLASHQIALLSKHDS
DVMELKAQLQSIRVLIGAGSKVCKAVCRRMYELIGNQRFVVGYGLSEMGG
LSKNVGGPVGCEGKVMRNVELRVLDKLKMPLGINEVGIIYARLRFKWAGY
YRNPEATRRALSSDGMWFRTGDIGYLDSEGYLYIQTRDTDVFKFNNFQIY
PEQIEEFILRLPGVSEACVFGIPDAVSTNLTACAVVRTKSPEGERLTADH
IRNIVEHHLSGAYHIRGGVYFIDSLPKTPNDKLQRRKVLGLVQQLELKAE
*

GH16244.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17999-PA 545 CG17999-PA 1..545 6..550 2835 100 Plus
CG9993-PA 543 CG9993-PA 6..532 12..538 1550 55.9 Plus
CG11453-PA 539 CG11453-PA 8..522 12..537 785 35 Plus
CG4830-PA 534 CG4830-PA 8..533 12..548 700 32.2 Plus
CG8834-PA 535 CG8834-PA 8..521 12..536 699 33.5 Plus

GH16244.pep Sequence

Translation from 16 to 1653

> GH16244.pep
MSCEVHYDAASRTWFGPRGKDFYGPEMTLGEVIMRVLQINADQVMQICDT
TGQELTGAQLAQQSARIAQAFKRLGLRRGDVVGISANNSTYLTSVIIAAL
LRGIPINPLHPEFTEETVKYMYDITEPKVIFCDVENYHIIKTVNGKLQNP
AKIYLVNGKLEGVLDISEMLNDEDSITAAAYVPCPKLHGDHTAFIVCSSG
TTGMPKGVTRSHRSLLCNCKNPNTYTRDSVLLSFSPLYWISGTIILLASL
LNGCRRIITNRPYSVEYLLQLVARHKVTFLFLASHQIALLSKHDSDVMEL
KAQLQSIRVLIGAGSKVCKAVCRRMYELIGNQRFVVGYGLSEMGGLSKNV
GGPVGCEGKVMRNVELRVLDKLKMPLGINEVGIIYARLRFKWAGYYRNPE
ATRRALSSDGMWFRTGDIGYLDSEGYLYIQTRDTDVFKFNNFQIYPEQIE
EFILRLPGVSEACVFGIPDAVSTNLTACAVVRTKSPEGERLTADHIRNIV
EHHLSGAYHIRGGVYFIDSLPKTPNDKLQRRKVLGLVQQLELKAE*

GH16244.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12740-PA 547 GF12740-PA 1..543 1..543 2650 89.1 Plus
Dana\GF12739-PA 543 GF12739-PA 6..532 7..533 1615 55.5 Plus
Dana\GF17617-PA 539 GF17617-PA 7..522 6..532 779 34.7 Plus
Dana\GF17741-PA 533 GF17741-PA 8..533 7..543 758 33.1 Plus
Dana\GF12065-PA 536 GF12065-PA 8..522 7..531 748 34.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20826-PA 545 GG20826-PA 1..545 1..545 2769 93.6 Plus
Dere\GG20824-PA 543 GG20824-PA 6..532 7..533 1611 56.1 Plus
Dere\GG23505-PA 539 GG23505-PA 7..522 6..532 753 35.2 Plus
Dere\GG22584-PA 535 GG22584-PA 8..521 7..531 751 34.8 Plus
Dere\GG17154-PA 534 GG17154-PA 8..533 7..543 733 32.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19881-PA 549 GH19881-PA 6..549 2..545 2242 74.6 Plus
Dgri\GH19879-PA 544 GH19879-PA 6..538 7..540 1571 53.3 Plus
Dgri\GH15849-PA 540 GH15849-PA 4..524 2..533 763 34.8 Plus
Dgri\GH21197-PA 532 GH21197-PA 8..522 7..532 762 33.5 Plus
Dgri\GH15631-PA 537 GH15631-PA 4..523 2..530 758 32.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17999-PA 545 CG17999-PA 1..545 1..545 2835 100 Plus
CG9993-PA 543 CG9993-PA 6..532 7..533 1550 55.9 Plus
CG11453-PA 539 CG11453-PA 8..522 7..532 785 35 Plus
CG4830-PA 534 CG4830-PA 8..533 7..543 700 32.2 Plus
CG8834-PA 535 CG8834-PA 8..521 7..531 699 33.5 Plus
CG11407-PA 538 CG11407-PA 8..523 6..530 672 30 Plus
CG11391-PA 542 CG11391-PA 12..531 7..533 672 31.1 Plus
CG4563-PA 537 CG4563-PA 11..522 7..530 639 30.2 Plus
CG5568-PA 545 CG5568-PA 17..531 7..530 621 28.8 Plus
CG18586-PB 545 CG18586-PB 17..534 7..533 587 28.3 Plus
CG6300-PA 537 CG6300-PA 6..523 4..530 575 27.9 Plus
CG11659-PA 546 CG11659-PA 6..523 4..530 571 27.9 Plus
CG18586-PC 536 CG18586-PC 17..525 7..533 566 28.2 Plus
CG6178-PA 544 CG6178-PA 26..543 28..543 472 26.5 Plus
pdgy-PC 597 CG9009-PC 73..591 25..533 365 23.5 Plus
pdgy-PB 597 CG9009-PB 73..591 25..533 365 23.5 Plus
pdgy-PD 597 CG9009-PD 73..591 25..533 365 23.5 Plus
pdgy-PA 597 CG9009-PA 73..591 25..533 365 23.5 Plus
CG12512-PA 593 CG12512-PA 72..590 52..544 264 23.3 Plus
CG6432-PB 674 CG6432-PB 255..625 182..531 172 20.6 Plus
CG6432-PA 674 CG6432-PA 255..625 182..531 172 20.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19830-PA 546 GI19830-PA 3..546 2..545 2326 76.8 Plus
Dmoj\GI19829-PA 544 GI19829-PA 6..537 7..539 1625 55.2 Plus
Dmoj\GI21314-PA 516 GI21314-PA 1..509 22..541 801 35.5 Plus
Dmoj\GI22427-PA 540 GI22427-PA 8..523 6..532 791 34.9 Plus
Dmoj\GI21292-PA 535 GI21292-PA 2..527 4..540 781 34.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17420-PA 545 GL17420-PA 1..545 1..545 2592 87.7 Plus
Dper\GL17419-PA 545 GL17419-PA 6..541 7..540 1592 55 Plus
Dper\GL21570-PA 533 GL21570-PA 8..533 7..543 804 34.8 Plus
Dper\GL12674-PA 523 GL12674-PA 5..506 4..532 770 35 Plus
Dper\GL10440-PA 535 GL10440-PA 8..521 7..531 708 32.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14760-PA 545 GA14760-PA 1..545 1..545 2609 88.1 Plus
Dpse\GA22173-PA 545 GA22173-PA 6..541 7..540 1594 55.2 Plus
Dpse\GA27586-PA 539 GA27586-PA 7..522 6..532 803 35.8 Plus
Dpse\GA18463-PA 533 GA18463-PA 8..533 7..543 802 34.8 Plus
Dpse\GA21356-PA 535 GA21356-PA 8..521 7..531 713 32.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15772-PA 544 GM15772-PA 1..544 1..545 2812 96.1 Plus
Dsec\GM15771-PA 543 GM15771-PA 6..532 7..533 1567 54.8 Plus
Dsec\GM20364-PA 535 GM20364-PA 8..521 7..531 805 36.2 Plus
Dsec\GM20876-PA 539 GM20876-PA 7..522 6..532 792 35.1 Plus
Dsec\GM26863-PA 537 GM26863-PA 7..526 6..533 747 33.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25248-PA 545 GD25248-PA 1..545 1..545 2829 96.5 Plus
Dsim\GD25247-PA 543 GD25247-PA 6..532 7..533 1597 55.9 Plus
Dsim\GD25844-PA 534 GD25844-PA 8..521 7..531 794 35.6 Plus
Dsim\GD19314-PA 539 GD19314-PA 7..522 6..532 794 34.9 Plus
Dsim\GD25845-PA 535 GD25845-PA 8..521 7..531 785 35.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18640-PA 548 GJ18640-PA 6..548 2..545 2371 80.3 Plus
Dvir\GJ18629-PA 544 GJ18629-PA 6..537 7..539 1655 56.4 Plus
Dvir\GJ22334-PA 533 GJ22334-PA 3..531 4..542 805 36.1 Plus
Dvir\GJ10988-PA 540 GJ10988-PA 8..524 6..533 771 34.7 Plus
Dvir\GJ22332-PA 532 GJ22332-PA 3..521 2..531 757 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22880-PA 545 GK22880-PA 1..545 1..545 2411 79.8 Plus
Dwil\GK22879-PA 543 GK22879-PA 6..532 7..533 1608 55.2 Plus
Dwil\GK22355-PA 541 GK22355-PA 7..524 6..532 770 35.2 Plus
Dwil\GK21395-PA 533 GK21395-PA 10..523 7..531 719 32.3 Plus
Dwil\GK22353-PA 533 GK22353-PA 6..523 4..530 692 30.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13766-PA 545 GE13766-PA 1..545 1..545 2826 96.5 Plus
Dyak\GE13765-PA 543 GE13765-PA 6..532 7..533 1590 56.1 Plus
Dyak\GE13452-PA 672 GE13452-PA 8..520 7..531 793 35.3 Plus
Dyak\GE13453-PA 535 GE13453-PA 8..521 7..531 787 35.8 Plus
Dyak\GE25626-PA 487 GE25626-PA 7..459 6..467 735 35.8 Plus
Dyak\GE13452-PA 672 GE13452-PA 538..658 398..531 163 32.6 Plus