Clone GH16255 Report

Search the DGRC for GH16255

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:162
Well:55
Vector:pOT2
Associated Gene/Transcriptjeb-RA
Protein status:GH16255.pep: gold
Preliminary Size:5685
Sequenced Size:4492

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30040 2001-07-04 Blastp of sequenced clone
jeb 2008-04-29 Release 5.5 accounting
jeb 2008-08-15 Release 5.9 accounting
jeb 2008-12-18 5.12 accounting

Clone Sequence Records

GH16255.complete Sequence

4492 bp (4492 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060310

> GH16255.complete
ATCCTGCTGAGACGACACGACGAGTCCTTGCTCGTCGGTTCAAACGTGCG
GAACACTCTTGGAGCCAGGCGATAAAAAAGAATATAACAAAAAAAAAAAA
AAATATACACACTAGTAGCAAAGCTAGTCCACTAAAACATCACTCACCCA
GAACAAGGGAAAGTTTTCACACCACAAACGAAAGCTGAATAACAACACAA
GAAAATTATATACCCAAGAAACCAAAGTGCCGCGAACAAAAACTAACTAA
TAAGCCTAAGGTCTAAATCGAAATCGAGTGGACTGGCCAGTGAAAAGAAG
AACGCCAAGTTAAGTGCCCGAAAAAATATACAGATAATATCGAAAAATAA
CGAAACCATAAACAACGGTCGTTGCAAGGCATCCACAAAAACGCGATAGC
CAAAAAGTTTGAAAAAGAAAAAAAAAACACACACACACAAATTTGGAAAA
GTTCGAAATTTTCGAAAAAACTTCGTTCGGTGCAGGCCAGTGTAGTGCAA
TGCCAGGCTTAGGCCGGCACAGTGTTGGTCAGCGGTGTGGGGCCTGAAGA
CCCACAAAAGCCGTGTGTGCAAAGCATCGAAAGTCCAGAGAGAAACATTG
ATATCGGGACTTTCCCTCACCACCATTCACCGCCACCAGCCCCGAAAAAC
CACCTGCCACCAGTCTCTATAACTCCCGCCCCCACCCCCAAACACCATCC
CCCCGGACTAGCAAACTAACTGTATTTTCCCCTTGGTAAACCCCCTGGTA
AACCCGAAACCGCCAAGATAAGCCGTCTAATCGAGAAGCTGCGCCAGACC
AACAAACGGAAAATGTTCTGCTCGCTGGCCCAGACGCTCTTCTGCGTCCT
GCTCATACAGGGCGGCCTCTATGCCCTCCATCTGAGCGGAAACGGAAATG
GCAACGGGAACGGGAATGGGAACGGCGAGAAGTCGCTGGGCGAAGCCAAG
GCAGTGCAGGTGCCCAGTCATCCCGTTGGACCCTCGACGGGAGTAGCCGC
CGCCTGGCAGACCGCACCCTCGCAGCAGCAGCAGCACCAACAGCATCCCG
GAGGATCTCCGCCCGGCGGTGGATCCTCGCCGCATGGCCATCGGTCCGCC
GCAGCGGCCGCCTTCGATGCCACCACCGTGCGGCTGAACAAGGAGATAGC
GGATATGGCCCAGCTGGAGCGAGAGCGACTAATGCTCCTGGCCCGCGCCA
AGCAGACGGCGGAACAGCCGCCGGCGGGCAGTAATCATCGCGGTCATCCC
TTCATTGCCGGCCGGATACAGATGCAGCCCAGCGAGGAGCTGGAAGTGGG
CGACTATCCGGCGCTGTTGCAGCAGGCCGCACGGGGCTACATCTTCGGTA
ATGTGCAGAAGCAACCACCGACGCCGGTTACCCTGGAACAGGATTATGAG
CAGCTGAGGGATCTGGAGAATAGACCCGTTAAATACTACGGAAGAGTGGT
GCAGCCAGCGGAGAGGGAGGAGCAGGTGGAGGCTCTCTACGAACCGCTGC
ACTCGTTCGGCGACTTTGATGACTTCTCGGAACTGGAGCAGGAACCGCAG
GAGCCGCACTTGGGCGAGGATGAGTTGCTGCGTGAACTGGATGCCTATCA
ATATCACGGCCTGGAGGACGAAACCCTTCCGGAGAATCCCTATCGCACGC
TGGAGCAATTGGAGCTGGGTGCACCCGACTCCCTGCAGCAGCTCTTCGAG
CAGGAACAGGAGCAGCGAGATGCCCCCTTCAAGGCGATGCACACCGGCAA
AATCCACAACCCGGGCAACTACAACATAAGGGTGCAGCAAAAGTGGGCGA
GGAAACGAAATGGCCAGGGCATTGCCCATAATCCTGAGGCGGAAAAGCAG
CTGCAGCGCCAGATCTTCGCCCAGCACTTCAAGCCACAGCGCAATGGCAA
ACTATCGCTGTCCGCCAACTCCGAGGCCACGGCCAGCAAGCACCTGAAAC
CATCCACTCGCTCCGGCTCCAAGGATAACGAGAAGCCACATAGCGAGCTA
GGTAGCAGTGCATCCTCGGCCGTCTCCTCCGCCACTTCTTCCTCCGGCAA
ACAAGCCGCCGGCGATGGACTACCTAAACAGCAGCAGGTGGAGCAACAGT
CGCAGCAGGACAAAAAGGATCCCAGCCATAAGCGATCCGGTTCCGGATCG
GCGGGATCCATGGGATCGCCAGGAGGCGGTTACTCAGCGCAGCCACCGAT
TTCACACAGCATAGCCAGCCAGCTGATGCTGCGCACCGCCCGCGGTCAAC
GGCAATACGATGTGCCACAAATCGAGTGTCCTACCGCCATGGATGGCATG
GAGCGATTCGCCTGTCCGATTCCCGACCGGCAGGGCAGATACCGCTGCAT
AGACGATCATGTGCTGTGCGATGGCTTCATCGACTGTCCCGATGGCGAGG
ACGAGGACCGAAGATCCTGCATGTTCTACAAGACGACGAAGGCCCATCTG
GATGTGTTAGCGGATGCGTTACTACGCTGGGCGCGAGGGCGTTAAGCTCC
ACCCACCCACCAACCACACACACACATACACACACACACACCGTCTAATA
CACAGCACACACAGAGAAAATACACCTAGCGAACTCACATTGACAAACAA
TTAGTTTTAACATGTCGCCCCAAGCAAACAAGAACCCTGTTAAGTTAAAC
ATTATCCTGGAACCAGACACACAGACAAGCCACAAACCACCCGCCTATCC
TTTGATGTCCTTCATGAGAAAGATTTTCCCGAGCAAATACCGTAAAAAAA
TCCCCAGCCACACAAAAATTCAGCTCGCAATGGGCTAAATGGACAATTGC
CAAGTATGAAAAGCGAAAGCTATGATTAAAAACAAAGTGAGGCAGAAAAT
GTGCTTGACGAAAGGTATGATTATTATTACACTATTATTATTAAAAAAAA
TTAACTTAATGAAAAGCCCAAGCAGAAGAAGCAGTTATACATACTAAAGC
TAAATTACAATTCAGCAAAAGGACAAAAAAAAAACGATGTTTTTTTCATT
TTCAAACTTGTTTCGCAGGAACAGAAAACATAATGAGGAAAAACAAAATT
GGGCCTAACTATATTTAGTATATATTAAATAAATATATTATAAATATATC
TTACTATATGAAATATATTTCGTGTACATTATTTAATTATACGTGTATTA
AAGTTAAATAATGTTAATGTTAAATAAACAAATGAAATGAAATGAAATCA
AAACGAAGCAAGCAAAAAGAAAAAAAGCGATAAAAATAACGATGAGGCAG
CAAGCAGAAGACGAATGAATTATATATACATATACACAGAAAAAAACCGA
CATTAAATATATATTAATAGTATACATATACCAATAACAAACAAATATAC
AATTGAAGAAAATATTGCATTAGGTTTTATTGCTGATAACTGAACAAGCT
AACGAGTGCAATATAATATACTTATATACAATGCAATAACAGCAAGATTA
GCGACAAAAACAAACATTTACAACTTATGAGAATGAAGCAAACATTTACA
TAAAGAAAAAGACTTGACTTCATTGAAAACCCAATTAAGTTTCTATAGTA
CTCAGATACTTTTGGTTTTGAACTTCAACTCTCGTTGTTAGTAATACGTT
TGCCATTATAGATGATTTGCTCCGATTCTTTGTCCTTCATGTTTGTAAAT
AATACTTTCAATTATCCTTTTCGTTTGCCTGTAAGGATCTCTCCCCCTCC
ATACCACAGTTTTTGATTTCGTTCATGAGTGACAACAGTTCTCACGGAAA
TGGCAGCTATCTGTAGTTAAGTAAATTTATTTACATAATTGAACTATGTT
TAAATAACAATGGACTTATAAATATATATATCTATATATATATATATATA
TATAAAACGATAAGCTTATAAGCGAAACGAAAAGCTTGTACAAATGCTAA
CTAACACTAATCCATTCTCGACCTTTTTTCGAAGCCACAAGTGTTTATTC
CTAATCGATTTTTGCATTAGTTTTTTATTCGCGCTGTTTTTCTCGATTGG
AAAAGCTGAAACTCAACCTTAAAACTCAACCAACAATGTTATCTGGTCCA
TGAAAATTATTCGCTATTATTATGCCTGTTAAGTGGCGAGTTTCCAACAC
AATCAATCAATTATGAAATACAATCAAGCAAATTTTTAAGCCGAAATTTA
CAAATTAAAATTTTTAAACGGTTGTGTACGCAAACAAATGACAGCGGCAA
AAGCAAAAAGCGCAAGATAATACCAATGGCGAATTAACAATAATAATGAA
TAACCTCTAGAGCGATTTTCACATACTGCATTTCCCGCGTTTTCCCCCGA
ATTTCCGCATTAATTTCCGCATTTCATTCAATTGAAATATTGAAACACGG
CAAGCAAGCGTTTTAATCGCGATTGACTTTGTGGACTTAATCAATCGATA
ATTGGTGTCATTTATTTTTTTGCACGTATGTATTTGCATGTTACTAAATC
GATTCGTGTGAATTGCTAAATCCTAAAAAAAAAAAAAAAAAA

GH16255.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
jeb.a 4969 jeb.a 480..4961 1..4482 22380 99.9 Plus
jeb-RA 4504 jeb-RA 15..4496 1..4482 22380 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8003793..8006066 2274..1 11265 99.7 Minus
chr2R 21145070 chr2R 7977851..7979887 4474..2435 9840 99.3 Minus
chr2R 21145070 chr2R 7979965..7980126 2435..2274 810 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12116599..12118872 2274..1 11355 100 Minus
2R 25286936 2R 12090622..12092669 4482..2435 10225 100 Minus
2R 25286936 2R 12092747..12092908 2435..2274 810 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12117798..12120071 2274..1 11355 99.9 Minus
2R 25260384 2R 12091821..12093868 4482..2435 10225 99.9 Minus
2R 25260384 2R 12093946..12094107 2435..2274 810 100 Minus
Blast to na_te.dros performed 2019-03-16 07:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 824..1183 3013..3353 191 56.6 Plus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 583..902 3172..3508 129 54.8 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1165..1194 2866..2895 123 90 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6052..6189 3413..3560 122 60 Plus

GH16255.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:15:08 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7977851..7979886 2436..4474 93 <- Minus
chr2R 7979965..7980125 2275..2435 100 <- Minus
chr2R 8003793..8006066 1..2274 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:00:24 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1..1683 813..2495 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:11 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1..1683 813..2495 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:06:49 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1..1683 813..2495 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:59:15 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1..1683 813..2495 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:28:18 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1..1683 813..2495 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:22 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1..4474 1..4474 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:11 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1..4474 1..4474 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:49 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RB 469..4942 1..4474 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:59:15 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1..4474 1..4474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:28:18 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RB 469..4942 1..4474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:15:08 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12090630..12092668 2436..4474 99 <- Minus
2R 12092747..12092907 2275..2435 100 <- Minus
2R 12116599..12118872 1..2274 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:15:08 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12090630..12092668 2436..4474 99 <- Minus
2R 12092747..12092907 2275..2435 100 <- Minus
2R 12116599..12118872 1..2274 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:15:08 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12090630..12092668 2436..4474 99 <- Minus
2R 12092747..12092907 2275..2435 100 <- Minus
2R 12116599..12118872 1..2274 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:49 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7978135..7980173 2436..4474 99 <- Minus
arm_2R 7980252..7980412 2275..2435 100 <- Minus
arm_2R 8004104..8006377 1..2274 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:37:06 Download gff for GH16255.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12091829..12093867 2436..4474 99 <- Minus
2R 12093946..12094106 2275..2435 100 <- Minus
2R 12117798..12120071 1..2274 99   Minus

GH16255.pep Sequence

Translation from 812 to 2494

> GH16255.pep
MFCSLAQTLFCVLLIQGGLYALHLSGNGNGNGNGNGNGEKSLGEAKAVQV
PSHPVGPSTGVAAAWQTAPSQQQQHQQHPGGSPPGGGSSPHGHRSAAAAA
FDATTVRLNKEIADMAQLERERLMLLARAKQTAEQPPAGSNHRGHPFIAG
RIQMQPSEELEVGDYPALLQQAARGYIFGNVQKQPPTPVTLEQDYEQLRD
LENRPVKYYGRVVQPAEREEQVEALYEPLHSFGDFDDFSELEQEPQEPHL
GEDELLRELDAYQYHGLEDETLPENPYRTLEQLELGAPDSLQQLFEQEQE
QRDAPFKAMHTGKIHNPGNYNIRVQQKWARKRNGQGIAHNPEAEKQLQRQ
IFAQHFKPQRNGKLSLSANSEATASKHLKPSTRSGSKDNEKPHSELGSSA
SSAVSSATSSSGKQAAGDGLPKQQQVEQQSQQDKKDPSHKRSGSGSAGSM
GSPGGGYSAQPPISHSIASQLMLRTARGQRQYDVPQIECPTAMDGMERFA
CPIPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRSCMFYKTTKAHLDVLA
DALLRWARGR*

GH16255.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12645-PA 538 GF12645-PA 1..538 1..560 2055 77.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22609-PA 559 GG22609-PA 1..559 1..560 2412 95.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21041-PA 574 GH21041-PA 1..574 1..560 1502 61 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-PB 560 CG30040-PB 1..560 1..560 2962 100 Plus
jeb-PA 560 CG30040-PA 1..560 1..560 2962 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18644-PA 586 GI18644-PA 1..586 1..560 1509 59.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17386-PA 570 GL17386-PA 1..570 1..560 1673 64.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15598-PA 567 GA15598-PA 1..556 1..544 1579 62.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20388-PA 551 GM20388-PA 1..544 1..544 2833 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25042-PA 473 GD25042-PA 1..472 1..487 2389 94 Plus
Dsim\GD15249-PA 68 GD15249-PA 1..68 493..560 405 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21660-PA 575 GJ21660-PA 1..575 1..560 1557 60.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21979-PA 587 GK21979-PA 1..587 1..560 1528 63.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13477-PA 559 GE13477-PA 1..559 1..560 2843 95.7 Plus

GH16255.hyp Sequence

Translation from 812 to 2494

> GH16255.hyp
MFCSLAQTLFCVLLIQGGLYALHLSGNGNGNGNGNGNGEKSLGEAKAVQV
PSHPVGPSTGVAAAWQTAPSQQQQHQQHPGGSPPGGGSSPHGHRSAAAAA
FDATTVRLNKEIADMAQLERERLMLLARAKQTAEQPPAGSNHRGHPFIAG
RIQMQPSEELEVGDYPALLQQAARGYIFGNVQKQPPTPVTLEQDYEQLRD
LENRPVKYYGRVVQPAEREEQVEALYEPLHSFGDFDDFSELEQEPQEPHL
GEDELLRELDAYQYHGLEDETLPENPYRTLEQLELGAPDSLQQLFEQEQE
QRDAPFKAMHTGKIHNPGNYNIRVQQKWARKRNGQGIAHNPEAEKQLQRQ
IFAQHFKPQRNGKLSLSANSEATASKHLKPSTRSGSKDNEKPHSELGSSA
SSAVSSATSSSGKQAAGDGLPKQQQVEQQSQQDKKDPSHKRSGSGSAGSM
GSPGGGYSAQPPISHSIASQLMLRTARGQRQYDVPQIECPTAMDGMERFA
CPIPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRSCMFYKTTKAHLDVLA
DALLRWARGR*

GH16255.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-PB 560 CG30040-PB 1..560 1..560 2962 100 Plus
jeb-PA 560 CG30040-PA 1..560 1..560 2962 100 Plus