Clone GH16413 Report

Search the DGRC for GH16413

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:164
Well:13
Vector:pOT2
Associated Gene/TranscriptTektin-A-RA
Protein status:GH16413.pep: gold
Preliminary Size:1971
Sequenced Size:2034

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4767 2001-01-01 Release 2 assignment
CG4767 2001-09-19 Blastp of sequenced clone
CG4767 2003-01-01 Sim4 clustering to Release 3
Tektin-A 2008-04-29 Release 5.5 accounting
Tektin-A 2008-08-15 Release 5.9 accounting
Tektin-A 2008-12-18 5.12 accounting

Clone Sequence Records

GH16413.complete Sequence

2034 bp (2034 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058398

> GH16413.complete
CACCAAACGAAAGTCATTCGTATACTTTACAATCCACGTGATATTTTGAT
ATTTTCACAAGTTAGTCGTAAGTTGAGCAATAATGAATTGTTTGGAGAAG
AAATCGCCGGAGGCAAATCCAGAGTGTAAGGGCAGGACGATTGAGTTAAA
TCCGGGATCTGCTTGCCCGGCTCCGCTAATCTGTCCCCTGCCGACGGAAC
CACCCTCCCACCGACTGAAAAAGCCACCGCAGCCCGCCCTGGTAGCCTTG
ACACCTCATCCCGATGAGGCCGCCCAACAGCACCTGGTCCAAAATATTAT
GGGTTCTGCCCAAGAGCATCAGAAGCTACAGGCGGATCTCCAAGCGGGAG
TTGACCAACAGCAGATGCAATTGGCCGATATGCGAGCTGAACAGTACAAG
CAATCGAACAAGCCACTCAGAATGGAGGAAGTGCAGTTTGCGCGTTCCAT
GGACCCCGAAGCAGATGACTTGCGGAATCCACCGTGCTACTTGCCCCAAC
AGGGCGATGAGTTGCCTCACAAGGACCAGCTGATGCCCATGGGTCCGATT
GGTCCATGGGCATCGGGCAAGGTGGATTGGAGCCCCATGGCCGGCATAAC
GGGAACGAGACCCGTTGTGGACCGCTACTCGATCACCCGGTACAGCCCAA
ATGAATGGCGGACCAGGAACCACGAGACTGTACAGGTCGTCAACGCAAGC
TTGGGCAGGGCGGATAAAAACCGCTTCAGTTCGACCACCGAATTCCTAAG
GCTCTCCGCCCTGGTGGACAAGTCGCAAAAGGAAACCACCGACAAACTTA
GGATCCGTTCGCAGTTGATTGGCAAATGGAAGAATACTTTGGAGAACGCC
ATTAAGGCGATGGCCGATGAGATATCCACTATGGAAGTGGAGCGTATTAA
GCTGCGGAAATCCATGGTGGTTTTGGGCGTACCGGAATCCATAGCCAAGG
AGTGCATTGAGAAGAGGGCCACACGACCAGATACCGAGTTGGTTCGCGAC
CAGGTGGAAGAGGAGCTGGTCAACGAGTTGGCCCTTATAGCTGAAATCCG
AAGGTTATTGATGAAAACACTGGATGACTTCAATTCGCAGCAGGTTGAGA
ATCGAACGGCTAGGCAGCGACTCGAATACGATTGGAGTGACAAGAAGGAG
TCCTACGAGATTGATACAATAAATACCGGTTTAAATAACTGCTCTAGGAC
GATCATGTTCCGACCGGGAGCAGTTCGCCAGCCACCGGAACAAGCTTCTG
AAAAGTACTGGGAACACTTCAGCATGGAGACCCTGGACGAGTGCGAAAAG
TGTCGCCTCAAGTCGGTGGCCCTGCGAAACACTTTGAACTCGACACTAAT
GAACGCGGCCAGAGATATTCGCACACAGGCCGATGTCGTTGAAAAGGCTC
TGACCTCCAGGATCAACTGCACCCAAGAGGCGGTGCAACGGTTCGAGAAT
GATCTCAAGAATATCCTGCAGGGCACGGCCGATGTGGAGAACCGTATTGA
GCAGATGAAACGTCGCATTAACTCCTTCGATTCATCCATGAAGGTTGCCC
AAACGCGAATGGACAACCGCAGCTATCGTCCAAATGTGGAGAACTGCCGC
GATTTGGCCCAGCAGGAGCTTATCGATGGGGTGCACACCATCCAAAGTAG
TGTATCAGCCCTTCTTCATGAACTAGAGGAGGCGGAGCGGGTCAAGACGG
ATCTGGTCAATTCACGTGCTCGTCTCGAGCGAGAGATTATGCTGAAGAGG
CGCAGTCTCTTCATCGATCGGGAGCGTTGCATGCTCATGCGATCTTATTA
TCCTTCGGCTAATACCCTGAGTGGTGCTGCCACCTCTTAGAGGGGGTTGA
CCACATTTTATGTTGTCTAAATTTTCTGAGTGTAAACACACAATTTGCAA
AGAGATCTAAATTACCCAGTGCTCCTTTAAAGGGGAAAGCTTTTACGATT
ATTCACATTCAAAATTTGCAAGTGAATAAATTTTTGAATAAATGAAAAGC
TGTTCAGTATACGTAAAAAAAAAAAAAAAAAAAA

GH16413.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
Tektin-A-RA 2281 Tektin-A-RA 156..2173 1..2018 10090 100 Plus
Tektin-A.a 2182 Tektin-A.a 607..2182 443..2018 7880 100 Plus
Tektin-A.a 2182 Tektin-A.a 156..597 1..442 2210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 15853924..15855228 718..2014 6310 99.1 Plus
chr2L 23010047 chr2L 15853057..15853497 2..442 2190 99.8 Plus
chr2L 23010047 chr2L 15853583..15853858 442..717 1350 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15855154..15856454 718..2018 6505 100 Plus
2L 23513712 2L 15854281..15854722 1..442 2210 100 Plus
2L 23513712 2L 15854813..15855088 442..717 1380 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15855154..15856454 718..2018 6505 100 Plus
2L 23513712 2L 15854281..15854722 1..442 2210 100 Plus
2L 23513712 2L 15854813..15855088 442..717 1380 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:35:49 has no hits.

GH16413.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:36:59 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 15853056..15853497 1..442 99 -> Plus
chr2L 15853584..15853858 443..717 99 -> Plus
chr2L 15853924..15855228 718..2014 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:45:44 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 1..1758 83..1840 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:07:02 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 1..1758 83..1840 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:47 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 1..1758 83..1840 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:37:48 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 1..1758 83..1840 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:41:25 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 1..1758 83..1840 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:57:00 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 156..2169 1..2014 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:07:02 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 14..2027 1..2014 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:47 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 14..2027 1..2014 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:37:48 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 156..2169 1..2014 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:25 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 14..2027 1..2014 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:36:59 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15854281..15854722 1..442 100 -> Plus
2L 15854814..15855088 443..717 100 -> Plus
2L 15855154..15856450 718..2014 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:36:59 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15854281..15854722 1..442 100 -> Plus
2L 15854814..15855088 443..717 100 -> Plus
2L 15855154..15856450 718..2014 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:36:59 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15854281..15854722 1..442 100 -> Plus
2L 15854814..15855088 443..717 100 -> Plus
2L 15855154..15856450 718..2014 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:47 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15854281..15854722 1..442 100 -> Plus
arm_2L 15854814..15855088 443..717 100 -> Plus
arm_2L 15855154..15856450 718..2014 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:15:02 Download gff for GH16413.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15854814..15855088 443..717 100 -> Plus
2L 15855154..15856450 718..2014 100   Plus
2L 15854281..15854722 1..442 100 -> Plus

GH16413.pep Sequence

Translation from 82 to 1839

> GH16413.pep
MNCLEKKSPEANPECKGRTIELNPGSACPAPLICPLPTEPPSHRLKKPPQ
PALVALTPHPDEAAQQHLVQNIMGSAQEHQKLQADLQAGVDQQQMQLADM
RAEQYKQSNKPLRMEEVQFARSMDPEADDLRNPPCYLPQQGDELPHKDQL
MPMGPIGPWASGKVDWSPMAGITGTRPVVDRYSITRYSPNEWRTRNHETV
QVVNASLGRADKNRFSSTTEFLRLSALVDKSQKETTDKLRIRSQLIGKWK
NTLENAIKAMADEISTMEVERIKLRKSMVVLGVPESIAKECIEKRATRPD
TELVRDQVEEELVNELALIAEIRRLLMKTLDDFNSQQVENRTARQRLEYD
WSDKKESYEIDTINTGLNNCSRTIMFRPGAVRQPPEQASEKYWEHFSMET
LDECEKCRLKSVALRNTLNSTLMNAARDIRTQADVVEKALTSRINCTQEA
VQRFENDLKNILQGTADVENRIEQMKRRINSFDSSMKVAQTRMDNRSYRP
NVENCRDLAQQELIDGVHTIQSSVSALLHELEEAERVKTDLVNSRARLER
EIMLKRRSLFIDRERCMLMRSYYPSANTLSGAATS*

GH16413.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14924-PA 583 GF14924-PA 1..582 1..583 2697 85.4 Plus
Dana\GF20933-PA 604 GF20933-PA 208..602 185..579 406 28.9 Plus
Dana\GF10443-PA 421 GF10443-PA 130..413 286..570 190 25.3 Plus
Dana\GF13562-PA 433 GF13562-PA 63..383 234..543 179 24.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25176-PA 585 GG25176-PA 1..585 1..585 3083 97.4 Plus
Dere\GG17913-PA 585 GG17913-PA 1..585 1..585 3081 97.4 Plus
Dere\GG17527-PA 601 GG17527-PA 205..599 185..579 410 29.4 Plus
Dere\GG14110-PA 421 GG14110-PA 130..413 286..570 194 25.6 Plus
Dere\GG22824-PA 432 GG22824-PA 17..392 188..552 152 24.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10383-PA 585 GH10383-PA 4..583 3..583 2036 66.3 Plus
Dgri\GH24869-PA 595 GH24869-PA 199..593 185..579 388 27.3 Plus
Dgri\GH22217-PA 421 GH22217-PA 75..413 232..570 197 25.3 Plus
Dgri\GH17037-PA 421 GH17037-PA 75..413 232..570 197 25.3 Plus
Dgri\GH22718-PA 433 GH22718-PA 58..391 229..562 182 23.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tektin-A-PB 585 CG4767-PB 1..585 1..585 3017 100 Plus
Tektin-A-PA 585 CG4767-PA 1..585 1..585 3017 100 Plus
CG32820-PB 520 CG32820-PB 124..518 185..579 433 29.4 Plus
CG17450-PC 520 CG17450-PC 124..518 185..579 433 29.4 Plus
CG17450-PA 520 CG17450-PA 124..518 185..579 433 29.4 Plus
CG32819-PB 520 CG32819-PB 124..518 185..579 433 29.4 Plus
CG32820-PA 601 CG32820-PA 205..599 185..579 433 29.4 Plus
CG17450-PB 601 CG17450-PB 205..599 185..579 433 29.4 Plus
CG32819-PA 601 CG32819-PA 205..599 185..579 433 29.4 Plus
Tektin-C-PD 421 CG10541-PD 29..413 186..570 246 23.6 Plus
Tektin-C-PC 421 CG10541-PC 29..413 186..570 246 23.6 Plus
Tektin-C-PA 421 CG10541-PA 29..413 186..570 246 23.6 Plus
CG3085-PB 432 CG3085-PB 17..391 188..562 235 21.6 Plus
CG3085-PA 432 CG3085-PA 17..391 188..562 235 21.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17364-PA 586 GI17364-PA 4..582 3..581 2010 67.2 Plus
Dmoj\GI14700-PA 596 GI14700-PA 200..594 185..579 395 29.1 Plus
Dmoj\GI12041-PA 421 GI12041-PA 130..413 286..570 203 26.7 Plus
Dmoj\GI18504-PA 433 GI18504-PA 63..363 234..534 181 24.5 Plus
Dmoj\GI18502-PA 425 GI18502-PA 60..393 239..572 170 22.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15298-PA 586 GL15298-PA 1..585 1..584 2572 80.5 Plus
Dper\GL21420-PA 421 GL21420-PA 130..413 286..570 188 25.3 Plus
Dper\GL10775-PA 433 GL10775-PA 17..392 188..552 188 23.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18416-PA 586 GA18416-PA 1..585 1..584 2572 80.5 Plus
Dpse\GA22889-PA 488 GA22889-PA 138..486 231..579 375 29.5 Plus
Dpse\GA10385-PA 421 GA10385-PA 130..413 286..570 188 25.3 Plus
Dpse\GA15915-PA 433 GA15915-PA 17..392 188..552 188 23.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18638-PA 585 GM18638-PA 1..585 1..585 3125 99.3 Plus
Dsec\GM13535-PA 589 GM13535-PA 207..587 185..579 360 27.7 Plus
Dsec\GM22611-PA 130 GM22611-PA 2..128 453..579 220 38.6 Plus
Dsec\GM13895-PA 421 GM13895-PA 130..413 286..570 194 25.6 Plus
Dsec\GM15983-PA 432 GM15983-PA 58..392 229..552 161 24.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24023-PA 385 GD24023-PA 12..385 212..585 1951 98.9 Plus
Dsim\GD15491-PA 605 GD15491-PA 209..603 185..579 410 29.4 Plus
Dsim\GD17596-PA 421 GD17596-PA 130..413 286..570 210 26.3 Plus
Dsim\GD11736-PA 432 GD11736-PA 58..392 229..552 154 24.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18038-PA 586 GJ18038-PA 4..584 3..583 2009 67.6 Plus
Dvir\GJ17002-PA 596 GJ17002-PA 200..594 185..579 388 27.6 Plus
Dvir\GJ13311-PA 421 GJ13311-PA 75..413 232..570 205 25.6 Plus
Dvir\GJ21364-PA 425 GJ21364-PA 9..394 188..573 200 22.7 Plus
Dvir\GJ21366-PA 433 GJ21366-PA 36..391 209..562 175 22.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24269-PA 582 GK24269-PA 1..580 1..583 2253 72.8 Plus
Dwil\GK25605-PA 607 GK25605-PA 211..605 185..579 393 28.4 Plus
Dwil\GK17535-PA 421 GK17535-PA 130..413 286..570 191 25.6 Plus
Dwil\GK19550-PA 433 GK19550-PA 17..363 188..534 178 24.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21166-PA 585 GE21166-PA 1..585 1..585 3074 97.4 Plus
Dyak\GE15287-PA 601 GE15287-PA 205..599 185..579 411 29.4 Plus
Dyak\GE20534-PA 421 GE20534-PA 130..413 286..570 194 25.6 Plus
Dyak\GE14259-PA 432 GE14259-PA 17..392 188..552 156 24.5 Plus

GH16413.hyp Sequence

Translation from 82 to 1839

> GH16413.hyp
MNCLEKKSPEANPECKGRTIELNPGSACPAPLICPLPTEPPSHRLKKPPQ
PALVALTPHPDEAAQQHLVQNIMGSAQEHQKLQADLQAGVDQQQMQLADM
RAEQYKQSNKPLRMEEVQFARSMDPEADDLRNPPCYLPQQGDELPHKDQL
MPMGPIGPWASGKVDWSPMAGITGTRPVVDRYSITRYSPNEWRTRNHETV
QVVNASLGRADKNRFSSTTEFLRLSALVDKSQKETTDKLRIRSQLIGKWK
NTLENAIKAMADEISTMEVERIKLRKSMVVLGVPESIAKECIEKRATRPD
TELVRDQVEEELVNELALIAEIRRLLMKTLDDFNSQQVENRTARQRLEYD
WSDKKESYEIDTINTGLNNCSRTIMFRPGAVRQPPEQASEKYWEHFSMET
LDECEKCRLKSVALRNTLNSTLMNAARDIRTQADVVEKALTSRINCTQEA
VQRFENDLKNILQGTADVENRIEQMKRRINSFDSSMKVAQTRMDNRSYRP
NVENCRDLAQQELIDGVHTIQSSVSALLHELEEAERVKTDLVNSRARLER
EIMLKRRSLFIDRERCMLMRSYYPSANTLSGAATS*

GH16413.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
Tektin-A-PB 585 CG4767-PB 1..585 1..585 3017 100 Plus
Tektin-A-PA 585 CG4767-PA 1..585 1..585 3017 100 Plus
CG32820-PB 520 CG32820-PB 124..518 185..579 433 29.4 Plus
CG32819-PB 520 CG32819-PB 124..518 185..579 433 29.4 Plus
CG17450-PC 520 CG17450-PC 124..518 185..579 433 29.4 Plus