Clone GH16429 Report

Search the DGRC for GH16429

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:164
Well:29
Vector:pOT2
Associated Gene/TranscriptRagC-D-RA
Protein status:GH16429.pep: gold
Preliminary Size:1577
Sequenced Size:1552

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8707 2001-01-01 Release 2 assignment
CG8707 2001-07-04 Blastp of sequenced clone
CG8707 2003-01-01 Sim4 clustering to Release 3
CG8707 2008-04-29 Release 5.5 accounting
CG8707 2008-08-15 Release 5.9 accounting
CG8707 2008-12-18 5.12 accounting

Clone Sequence Records

GH16429.complete Sequence

1552 bp (1552 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051510

> GH16429.complete
CGATAAGAAACGCGCAGGAAAAGCAGAAAAAGGTAAACTGATCGTGACCG
CTATAGCCATTGCCTGTGCGTTTCATGCACACATCCGTTGACCTACGGCC
GGCCCCACCCCCAAAACCAGAATCCAGTGGAAGGCGGTAGACTCCGACAG
CATGAGCTACGATGATGATGACTATCCGGCGGACACGTTCCCCAAGGACT
TTGGCTACCGGGCCTACAACCAGGATGGCCTGGAACTGGAGCCCAATGCA
ACGGGCAGCAGCGAGACAAAGCCGCGCATTCTGCTGATGGGAATGCGCAG
ATCCGGCAAGAGCTCCATCCAAAAAGTGGTCTTCCACAAGATGTCGCCGA
ACGAGACGCTCTTCCTGGAGTCGACCAGTAAGATCGTGAAGGACGACATC
AACAACTCCAGCTTTGTGCAGTTCCAGATCTGGGACTTCCCCGGCCAGAT
TGACTTCTTCGAGCCGACCTTTGATTCTGACATGATCTTTGGAGGCTGTG
GAGCCCTGGTCTTTGTCATCGATGCCAAGGATGACTACAACGAGGCGCTG
ACCAAGTTCAAGAACACAGTGCTGCAGGCCTACAAAGTGAACAAGCGCAT
CAAGTTCGAGGTGTTTATACACAAGGTGGATGGAATTAGCGACGACTCGA
AAATGGAATCGCAGCGGGACATACACCAGCGGTCGTCGGATGACCTTAAC
GAGGCTGGCCTCGATCAGATCCACCTGAGTTTCCATCTGACCTCCATATA
CGACCACTCCATCTTCGAGGCCTTCTCCAAGGTGGTGCAGAAGCTGATTC
CCCAGCTTCCGACGCTGGAGAATCTGCTGAACATTTTTATACCAAACTCC
GGAATAGAAAAAGCCTTTCTGTTCGATGTGGTTTCCAAAATTTACATAGC
CACGGACTCGTCACCAGTCGATATGCAGACGTATGAGCTCTGCTGCGATA
TGATTGACGTGGTCATTGATCTGTCCAGCATATACAGCTCCGAAGAAACC
GCCTTTGACAGCGGGAGCTCTAGTCTCATCAAGTTAAACAACAACACGAT
ACTCTACCTGCGGGAGGTGAACAAGTTCCTGGCCCTGGTCTGCATCCTGC
GCGAGGAGAACTTCAACCGGCAGGGCGTCATCGACTACAATTTCATCTGT
TTCCGCGACGCCATCAGCGAGGTATTCGAGCTGCGGCTAAAGCGCCAGAA
GCAGCTGGAGAACAACGACCAGGACGACGATGATCTGGTCGATGAGCAGA
CCCTGATTCGCCATGGCCACGACGCAGGTGGAATTTCGCGAGCGCAGCCA
ATTAATTAGGCGCACTGCATCCCCAAGCGGAGAGCCCCTTTTATTGCCCC
CCTACGCTAGCTTCTCTGTGGACTCTTTGATTCCAATTTGTACGTTCTCT
TCCGTTAAATCTGATGTTACCTTTGTCTATTGATACGTTAGGACGCCACT
CTCACAGAGCAGCGTAAAAAATTGCCCAGCGGTTGAAATTATTGATAATA
CTACCAATAAACATGTCTATTTTTAAATACGAGAAAAAAAAAAAAAAAAA
AA

GH16429.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-RA 1714 RagC-RA 134..1666 1..1533 7665 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4049198..4049746 1533..985 2745 100 Minus
chr2R 21145070 chr2R 4050287..4050760 627..154 2370 100 Minus
chr2R 21145070 chr2R 4050007..4050227 844..624 1105 100 Minus
chr2R 21145070 chr2R 4050841..4050994 154..1 770 100 Minus
chr2R 21145070 chr2R 4049805..4049947 987..845 715 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8161679..8162227 1533..985 2745 100 Minus
2R 25286936 2R 8162768..8163241 627..154 2370 100 Minus
2R 25286936 2R 8162488..8162708 844..624 1105 100 Minus
2R 25286936 2R 8163322..8163475 154..1 770 100 Minus
2R 25286936 2R 8162286..8162428 987..845 715 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8162878..8163426 1533..985 2745 100 Minus
2R 25260384 2R 8163967..8164440 627..154 2370 100 Minus
2R 25260384 2R 8163687..8163907 844..624 1105 100 Minus
2R 25260384 2R 8164521..8164674 154..1 770 100 Minus
2R 25260384 2R 8163485..8163627 987..845 715 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:38:59 has no hits.

GH16429.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:40:02 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4049198..4049743 988..1533 100 <- Minus
chr2R 4049805..4049947 845..987 100 <- Minus
chr2R 4050007..4050225 626..844 100 <- Minus
chr2R 4050289..4050759 155..625 100 <- Minus
chr2R 4050841..4050994 1..154 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:45:45 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
CG8707-RA 1..1158 152..1309 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:12 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
RagC-RA 1..1158 152..1309 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:01:45 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 1..1158 152..1309 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:59:16 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
CG8707-RA 1..1158 152..1309 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:16:24 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 1..1158 152..1309 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:25:03 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
CG8707-RA 39..1571 1..1533 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:12 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
RagC-RA 39..1571 1..1533 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:45 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 26..1558 1..1533 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:59:17 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
CG8707-RA 39..1571 1..1533 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:24 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 26..1558 1..1533 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:40:02 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8163322..8163475 1..154 100   Minus
2R 8161679..8162224 988..1533 100 <- Minus
2R 8162286..8162428 845..987 100 <- Minus
2R 8162488..8162706 626..844 100 <- Minus
2R 8162770..8163240 155..625 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:40:02 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8163322..8163475 1..154 100   Minus
2R 8161679..8162224 988..1533 100 <- Minus
2R 8162286..8162428 845..987 100 <- Minus
2R 8162488..8162706 626..844 100 <- Minus
2R 8162770..8163240 155..625 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:40:02 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8163322..8163475 1..154 100   Minus
2R 8161679..8162224 988..1533 100 <- Minus
2R 8162286..8162428 845..987 100 <- Minus
2R 8162488..8162706 626..844 100 <- Minus
2R 8162770..8163240 155..625 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:45 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4049993..4050211 626..844 100 <- Minus
arm_2R 4049184..4049729 988..1533 100 <- Minus
arm_2R 4049791..4049933 845..987 100 <- Minus
arm_2R 4050275..4050745 155..625 100 <- Minus
arm_2R 4050827..4050980 1..154 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:37:07 Download gff for GH16429.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8162878..8163423 988..1533 100 <- Minus
2R 8163485..8163627 845..987 100 <- Minus
2R 8163687..8163905 626..844 100 <- Minus
2R 8163969..8164439 155..625 100 <- Minus
2R 8164521..8164674 1..154 100   Minus

GH16429.pep Sequence

Translation from 151 to 1308

> GH16429.pep
MSYDDDDYPADTFPKDFGYRAYNQDGLELEPNATGSSETKPRILLMGMRR
SGKSSIQKVVFHKMSPNETLFLESTSKIVKDDINNSSFVQFQIWDFPGQI
DFFEPTFDSDMIFGGCGALVFVIDAKDDYNEALTKFKNTVLQAYKVNKRI
KFEVFIHKVDGISDDSKMESQRDIHQRSSDDLNEAGLDQIHLSFHLTSIY
DHSIFEAFSKVVQKLIPQLPTLENLLNIFIPNSGIEKAFLFDVVSKIYIA
TDSSPVDMQTYELCCDMIDVVIDLSSIYSSEETAFDSGSSSLIKLNNNTI
LYLREVNKFLALVCILREENFNRQGVIDYNFICFRDAISEVFELRLKRQK
QLENNDQDDDDLVDEQTLIRHGHDAGGISRAQPIN*

GH16429.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11205-PA 387 GF11205-PA 1..387 1..385 1879 93.3 Plus
Dana\GF17274-PA 311 GF17274-PA 2..210 40..250 168 25.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10668-PA 385 GG10668-PA 1..385 1..385 2021 99.2 Plus
Dere\GG17406-PA 311 GG17406-PA 2..189 40..229 155 26.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19979-PA 389 GH19979-PA 1..385 1..381 1836 89.9 Plus
Dgri\GH18582-PA 311 GH18582-PA 2..210 40..250 178 26.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-PA 385 CG8707-PA 1..385 1..385 1990 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20265-PA 393 GI20265-PA 8..392 2..381 1719 87.5 Plus
Dmoj\GI24512-PA 311 GI24512-PA 2..210 40..250 170 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17373-PA 349 GL17373-PA 1..349 29..379 1736 93.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21270-PA 349 GA21270-PA 1..349 29..379 1730 93.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20713-PA 412 GM20713-PA 29..412 2..385 2030 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10180-PA 412 GD10180-PA 29..412 2..385 2030 100 Plus
Dsim\GD15291-PA 242 GD15291-PA 79..242 221..385 812 96.4 Plus
Dsim\GD15291-PA 242 GD15291-PA 29..165 2..148 283 45.6 Plus
Dsim\GD20832-PA 311 GD20832-PA 2..189 40..229 156 26.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20218-PA 389 GJ20218-PA 1..388 1..384 1770 89.7 Plus
Dvir\GJ22685-PA 311 GJ22685-PA 2..210 40..250 177 27 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23039-PA 369 GK23039-PA 1..351 1..355 1694 90.7 Plus
Dwil\GK25677-PA 306 GK25677-PA 2..210 40..250 168 25.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23242-PA 340 GE23242-PA 1..340 46..385 1764 98.2 Plus
Dyak\GE24810-PA 311 GE24810-PA 2..189 40..229 158 25.9 Plus

GH16429.hyp Sequence

Translation from 151 to 1308

> GH16429.hyp
MSYDDDDYPADTFPKDFGYRAYNQDGLELEPNATGSSETKPRILLMGMRR
SGKSSIQKVVFHKMSPNETLFLESTSKIVKDDINNSSFVQFQIWDFPGQI
DFFEPTFDSDMIFGGCGALVFVIDAKDDYNEALTKFKNTVLQAYKVNKRI
KFEVFIHKVDGISDDSKMESQRDIHQRSSDDLNEAGLDQIHLSFHLTSIY
DHSIFEAFSKVVQKLIPQLPTLENLLNIFIPNSGIEKAFLFDVVSKIYIA
TDSSPVDMQTYELCCDMIDVVIDLSSIYSSEETAFDSGSSSLIKLNNNTI
LYLREVNKFLALVCILREENFNRQGVIDYNFICFRDAISEVFELRLKRQK
QLENNDQDDDDLVDEQTLIRHGHDAGGISRAQPIN*

GH16429.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-PA 385 CG8707-PA 1..385 1..385 1990 100 Plus