Clone GH16463 Report

Search the DGRC for GH16463

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:164
Well:63
Vector:pOT2
Associated Gene/TranscriptCG3191-RA
Protein status:GH16463.pep: gold
Preliminary Size:1331
Sequenced Size:1256

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3191 2001-10-10 Blastp of sequenced clone
CG3191 2003-01-01 Sim4 clustering to Release 3
CG3191 2008-04-29 Release 5.5 accounting
CG3191 2008-08-15 Release 5.9 accounting
CG3191 2008-12-18 5.12 accounting

Clone Sequence Records

GH16463.complete Sequence

1256 bp (1256 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061823

> GH16463.complete
CCAGGCGTCAAGCCCAAAGGTTTAAAAGTGATTCGAAAGCGTTTTTGAAA
GTGATTCGAAAGCGATTGCTGCGTCCGATAGCCGATAGCAGACCAACCTG
GCGGAGGGAACAGCGACGGAGCAATCGATACCCAGGCCACAGCACCAATG
AGCCGCATAGGTGTGAGAGAGACTGGGGCGAGCGGTACGTCCGAGCAGCT
GCAGCGGGAACAGGATAGCGACACATCGGAACAGGCGGTGCGGAAGCAGG
AACGGGATCTCAAGGAGCTCCTCGAGTGGTTCCGGCAAAATGACAAGCTG
CCCAAGGAGATTGATCCGCTGCTGCTCCGGCGCTTCTACCAGTGCATGTT
TGGAGACGTGGAGGAGACTCGGAAGCTCATCGAGGTGAACTACGCCCTGC
GCAACCGGCACCCTCACCTGTTTATCAAGAGGGATCCTCTAGACGCGGAC
AGCAAGCGCACCTTTGACTACGCAGACATTCTACCGCTGCCTGGCCTAAC
GCCGGACAAATGCAAGGTGTCGCTGTACTGCTTTCGGGAGTTCGAGGCCT
CCAAGATGCACCACACGGAGGACACGCGCGCCTTCTTTATGGTCAGCGAC
TGCCGGTTCGTGACGCCGGACGATCTCGCCAAACCGGATGTCCTGTCCGA
AGGAGAGGTGCAGATATTCGACATGAAGGGCACCACAATGCGGCACATTT
CGCGGCTGACGATCAGCACGCTGCGCGCCTACATCAAGTTCCTCCAGCTG
GCATTTCCGGTGCGCCTGCGCGCCATTCACATGATTAACTGTCCAACTTA
CCTGGATCGGATCGTCAGCGTGGTGAAGCCGTTCATCAGCGACGAGGTCT
TCAAGCTGATCCGTTTCCACACGCAAAGCATAAATACGCTGTACGAGTTC
GTGCCGCGGGAGATGCTGCCGGAGGAGTACGGCGGAGGAGCCGGGTCCTT
AGAAGCACTGCGGACCCATACCCAAAAGGCCTTGGTTGAGCATCGCGACT
ATCTGATGGACCCCGATCACTGGGTGGTGGTGAAGCCGGAGAAGCGGAAC
GAGAGTTCGTGGAGATTTTTCAAATGATTACCTAGAACATCTTCCACGGT
AGCAAGGAGTCTCCTTCAACTGAAGACGGTTAAAAGTGTTTCAAGTGTAT
TGGGATAAACAGTTCCTGTGGCTTTTCATCTCTTAAATATCCATTTTTTT
TTTAAATTTGTGTTGAAATTGCTCAAAAATAAATAAGTAAAAAAAAAAAA
AAAAAA

GH16463.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3191-RA 1384 CG3191-RA 141..1384 1..1244 6220 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2145612..2145924 313..1 1550 99.7 Minus
chrX 22417052 chrX 2144587..2144891 858..554 1525 100 Minus
chrX 22417052 chrX 2144085..2144328 1238..995 1220 100 Minus
chrX 22417052 chrX 2145135..2145295 473..313 805 100 Minus
chrX 22417052 chrX 2144384..2144521 995..858 690 100 Minus
chrX 22417052 chrX 2144953..2145033 555..475 405 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2251672..2251984 313..1 1565 100 Minus
X 23542271 X 2250647..2250951 858..554 1525 100 Minus
X 23542271 X 2250139..2250388 1244..995 1250 100 Minus
X 23542271 X 2251195..2251355 473..313 805 100 Minus
X 23542271 X 2250444..2250581 995..858 690 100 Minus
X 23542271 X 2251013..2251094 555..474 410 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2259770..2260082 313..1 1565 100 Minus
X 23527363 X 2258745..2259049 858..554 1525 100 Minus
X 23527363 X 2258237..2258486 1244..995 1250 100 Minus
X 23527363 X 2259293..2259453 473..313 805 100 Minus
X 23527363 X 2258542..2258679 995..858 690 100 Minus
X 23527363 X 2259111..2259192 555..474 410 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:51:05 has no hits.

GH16463.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:51:53 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2144085..2144327 996..1238 100 <- Minus
chrX 2144384..2144520 859..995 100 <- Minus
chrX 2144587..2144889 556..858 100 <- Minus
chrX 2144953..2145034 474..555 98 <- Minus
chrX 2145135..2145294 314..473 100 <- Minus
chrX 2145612..2145924 1..313 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:45:49 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 1..930 148..1077 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:51:48 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 1..930 148..1077 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:52:16 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 1..930 148..1077 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:21:04 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 1..930 148..1077 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:19 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 1..930 148..1077 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:36:48 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 1..1238 1..1238 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:51:48 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 1..1238 1..1238 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:16 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 10..1247 1..1238 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:21:05 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 1..1238 1..1238 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:19 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 10..1247 1..1238 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:53 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
X 2250145..2250387 996..1238 100 <- Minus
X 2250444..2250580 859..995 100 <- Minus
X 2250647..2250949 556..858 100 <- Minus
X 2251013..2251094 474..555 100 <- Minus
X 2251195..2251354 314..473 100 <- Minus
X 2251672..2251984 1..313 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:53 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
X 2250145..2250387 996..1238 100 <- Minus
X 2250444..2250580 859..995 100 <- Minus
X 2250647..2250949 556..858 100 <- Minus
X 2251013..2251094 474..555 100 <- Minus
X 2251195..2251354 314..473 100 <- Minus
X 2251672..2251984 1..313 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:53 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
X 2250145..2250387 996..1238 100 <- Minus
X 2250444..2250580 859..995 100 <- Minus
X 2250647..2250949 556..858 100 <- Minus
X 2251013..2251094 474..555 100 <- Minus
X 2251195..2251354 314..473 100 <- Minus
X 2251672..2251984 1..313 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:16 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2144178..2144420 996..1238 100 <- Minus
arm_X 2144477..2144613 859..995 100 <- Minus
arm_X 2144680..2144982 556..858 100 <- Minus
arm_X 2145046..2145127 474..555 100 <- Minus
arm_X 2145228..2145387 314..473 100 <- Minus
arm_X 2145705..2146017 1..313 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:57:39 Download gff for GH16463.complete
Subject Subject Range Query Range Percent Splice Strand
X 2258243..2258485 996..1238 100 <- Minus
X 2258542..2258678 859..995 100 <- Minus
X 2258745..2259047 556..858 100 <- Minus
X 2259111..2259192 474..555 100 <- Minus
X 2259293..2259452 314..473 100 <- Minus
X 2259770..2260082 1..313 100   Minus

GH16463.pep Sequence

Translation from 147 to 1076

> GH16463.pep
MSRIGVRETGASGTSEQLQREQDSDTSEQAVRKQERDLKELLEWFRQNDK
LPKEIDPLLLRRFYQCMFGDVEETRKLIEVNYALRNRHPHLFIKRDPLDA
DSKRTFDYADILPLPGLTPDKCKVSLYCFREFEASKMHHTEDTRAFFMVS
DCRFVTPDDLAKPDVLSEGEVQIFDMKGTTMRHISRLTISTLRAYIKFLQ
LAFPVRLRAIHMINCPTYLDRIVSVVKPFISDEVFKLIRFHTQSINTLYE
FVPREMLPEEYGGGAGSLEALRTHTQKALVEHRDYLMDPDHWVVVKPEKR
NESSWRFFK*

GH16463.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21968-PA 304 GF21968-PA 1..304 1..309 1275 77 Plus
Dana\GF20915-PA 292 GF20915-PA 14..271 38..299 694 48.5 Plus
Dana\GF21967-PA 300 GF21967-PA 24..300 38..308 624 41.6 Plus
Dana\GF17713-PA 308 GF17713-PA 28..272 35..286 326 28.5 Plus
Dana\GF23257-PA 298 GF23257-PA 2..263 22..288 305 25.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12633-PA 309 GG12633-PA 1..309 1..309 1565 94.5 Plus
Dere\GG19584-PA 295 GG19584-PA 17..277 38..302 699 47.2 Plus
Dere\GG12632-PA 305 GG12632-PA 15..305 25..308 611 39.5 Plus
Dere\GG11035-PA 308 GG11035-PA 28..274 35..288 334 29 Plus
Dere\GG11860-PA 298 GG11860-PA 46..263 63..288 263 25.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12310-PA 288 GH12310-PA 3..288 24..309 1218 77.6 Plus
Dgri\GH24053-PA 295 GH24053-PA 8..272 28..299 666 46 Plus
Dgri\GH12309-PA 313 GH12309-PA 26..313 35..308 615 39.5 Plus
Dgri\GH22617-PA 308 GH22617-PA 28..272 35..286 326 28.9 Plus
Dgri\GH18936-PA 298 GH18936-PA 2..263 22..288 286 23.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3191-PC 309 CG3191-PC 1..309 1..309 1625 100 Plus
CG3191-PA 309 CG3191-PA 1..309 1..309 1625 100 Plus
CG3823-PA 295 CG3823-PA 17..277 38..302 684 46.8 Plus
CG3091-PC 303 CG3091-PC 8..303 20..308 582 38.3 Plus
CG3091-PA 303 CG3091-PA 8..303 20..308 582 38.3 Plus
CG2663-PC 308 CG2663-PC 28..283 35..303 336 28.3 Plus
CG2663-PA 308 CG2663-PA 28..283 35..303 336 28.3 Plus
CG11550-PA 298 CG11550-PA 7..263 22..288 272 24.3 Plus
CG33966-PA 310 CG33966-PA 8..273 15..285 233 26 Plus
CG33514-PA 311 CG33514-PA 11..277 17..288 225 24.9 Plus
CG30339-PA 308 CG30339-PA 8..289 15..300 222 26 Plus
CG12926-PA 313 CG12926-PA 13..276 15..285 217 24.5 Plus
CG10657-PA 334 CG10657-PA 46..287 28..277 188 24.7 Plus
CG10300-PA 311 CG10300-PA 18..273 24..286 176 23.4 Plus
CG10026-PD 290 CG10026-PD 24..255 19..263 173 24.2 Plus
CG10026-PC 290 CG10026-PC 24..255 19..263 173 24.2 Plus
CG10026-PA 290 CG10026-PA 24..255 19..263 173 24.2 Plus
CG10026-PB 299 CG10026-PB 33..264 19..263 173 24.2 Plus
CG31636-PB 313 CG31636-PB 25..265 33..278 163 24.4 Plus
CG31636-PA 313 CG31636-PA 25..265 33..278 163 24.4 Plus
CG5973-PF 311 CG5973-PF 178..274 169..265 159 33 Plus
CG5973-PE 311 CG5973-PE 178..274 169..265 159 33 Plus
CG5973-PG 311 CG5973-PG 178..274 169..265 159 33 Plus
CG5973-PD 311 CG5973-PD 178..274 169..265 159 33 Plus
CG5973-PC 311 CG5973-PC 178..274 169..265 159 33 Plus
CG5973-PB 311 CG5973-PB 178..274 169..265 159 33 Plus
CG5973-PA 311 CG5973-PA 178..274 169..265 159 33 Plus
CG33965-PA 317 CG33965-PA 32..285 35..292 159 21.9 Plus
CG10237-PD 301 CG10237-PD 45..267 32..263 157 22.7 Plus
CG10237-PA 301 CG10237-PA 45..267 32..263 157 22.7 Plus
CG10237-PE 306 CG10237-PE 50..272 32..263 157 22.7 Plus
CG10237-PC 306 CG10237-PC 50..272 32..263 157 22.7 Plus
CG10237-PB 324 CG10237-PB 68..290 32..263 157 22.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21454-PA 288 GI21454-PA 3..288 24..309 1231 78.7 Plus
Dmoj\GI21476-PA 305 GI21476-PA 7..273 27..300 676 46 Plus
Dmoj\GI21451-PA 297 GI21451-PA 5..297 28..308 630 41.2 Plus
Dmoj\GI23644-PA 308 GI23644-PA 28..272 35..286 332 28.6 Plus
Dmoj\GI24455-PA 298 GI24455-PA 44..263 60..288 283 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13391-PA 287 GL13391-PA 13..287 36..309 1268 84 Plus
Dper\GL26848-PA 3514 GL26848-PA 3249..3486 58..299 658 49.6 Plus
Dper\GL13389-PA 295 GL13389-PA 20..295 38..308 642 42.5 Plus
Dper\GL22169-PA 308 GL22169-PA 28..274 35..288 314 28.2 Plus
Dper\GL23532-PA 298 GL23532-PA 2..263 22..288 295 25.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22853-PA 287 GA22853-PA 13..287 36..309 1271 84.4 Plus
Dpse\GA17712-PA 303 GA17712-PA 2..275 18..299 699 46.1 Plus
Dpse\GA22852-PA 295 GA22852-PA 20..295 38..308 642 42.5 Plus
Dpse\GA15415-PA 308 GA15415-PA 28..274 35..288 314 28.2 Plus
Dpse\GA11062-PA 298 GA11062-PA 2..238 22..263 296 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18900-PA 309 GM18900-PA 1..309 1..309 1640 98.7 Plus
Dsec\GM12480-PA 295 GM12480-PA 17..277 38..302 700 47.2 Plus
Dsec\GM18899-PA 303 GM18899-PA 8..303 20..308 635 39.7 Plus
Dsec\GM10638-PA 308 GM10638-PA 28..274 35..288 331 28.6 Plus
Dsec\GM16424-PA 298 GM16424-PA 44..263 60..288 275 27.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16379-PA 303 GD16379-PA 26..303 38..308 621 40.8 Plus
Dsim\GD19620-PA 308 GD19620-PA 28..274 35..288 331 28.6 Plus
Dsim\GD16370-PA 298 GD16370-PA 44..263 60..288 274 27.1 Plus
Dsim\GD13840-PA 311 GD13840-PA 28..277 35..288 217 25.1 Plus
Dsim\GD10061-PA 308 GD10061-PA 29..289 37..300 206 25.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16475-PA 288 GJ16475-PA 4..288 23..309 1227 78.4 Plus
Dvir\GJ16499-PA 295 GJ16499-PA 15..272 38..299 680 46.9 Plus
Dvir\GJ16473-PA 282 GJ16473-PA 2..282 38..308 630 40.4 Plus
Dvir\GJ24720-PA 307 GJ24720-PA 27..271 35..286 329 28.9 Plus
Dvir\GJ24121-PA 298 GJ24121-PA 20..263 37..288 281 23.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16332-PA 291 GK16332-PA 17..291 37..309 1186 79.3 Plus
Dwil\GK19881-PA 298 GK19881-PA 2..285 18..307 708 45.2 Plus
Dwil\GK16331-PA 296 GK16331-PA 2..296 25..308 665 42.6 Plus
Dwil\GK22841-PA 306 GK22841-PA 26..272 35..288 324 27.8 Plus
Dwil\GK10975-PA 298 GK10975-PA 44..238 60..263 277 27.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16962-PA 309 GE16962-PA 1..309 1..309 1571 93.9 Plus
Dyak\GE16743-PA 295 GE16743-PA 17..277 38..302 701 47.5 Plus
Dyak\GE16961-PA 306 GE16961-PA 29..306 38..308 620 39.9 Plus
Dyak\GE25285-PA 308 GE25285-PA 28..274 35..288 333 29 Plus
Dyak\GE23308-PA 298 GE23308-PA 46..263 63..288 257 25.7 Plus

GH16463.hyp Sequence

Translation from 147 to 1076

> GH16463.hyp
MSRIGVRETGASGTSEQLQREQDSDTSEQAVRKQERDLKELLEWFRQNDK
LPKEIDPLLLRRFYQCMFGDVEETRKLIEVNYALRNRHPHLFIKRDPLDA
DSKRTFDYADILPLPGLTPDKCKVSLYCFREFEASKMHHTEDTRAFFMVS
DCRFVTPDDLAKPDVLSEGEVQIFDMKGTTMRHISRLTISTLRAYIKFLQ
LAFPVRLRAIHMINCPTYLDRIVSVVKPFISDEVFKLIRFHTQSINTLYE
FVPREMLPEEYGGGAGSLEALRTHTQKALVEHRDYLMDPDHWVVVKPEKR
NESSWRFFK*

GH16463.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3191-PC 309 CG3191-PC 1..309 1..309 1625 100 Plus
CG3191-PA 309 CG3191-PA 1..309 1..309 1625 100 Plus
CG3823-PA 295 CG3823-PA 17..277 38..302 684 46.8 Plus
CG3091-PC 303 CG3091-PC 8..303 20..308 582 38.3 Plus
CG3091-PA 303 CG3091-PA 8..303 20..308 582 38.3 Plus