Clone GH16592 Report

Search the DGRC for GH16592

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:165
Well:92
Vector:pOT2
Associated Gene/Transcriptyellow-f-RA
Protein status:GH16592.pep: gold
Preliminary Size:1346
Sequenced Size:1457

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18550 2002-01-01 Sim4 clustering to Release 2
CG18550 2002-12-10 Blastp of sequenced clone
CG18550 2003-01-01 Sim4 clustering to Release 3
yellow-f 2008-04-29 Release 5.5 accounting
yellow-f 2008-08-15 Release 5.9 accounting
yellow-f 2008-12-18 5.12 accounting

Clone Sequence Records

GH16592.complete Sequence

1457 bp (1457 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003613

> GH16592.complete
AGTCAGTCACAAGTGGGTTTTCAGCCAGGAAAGGCGAACGACCGGAATTT
TATAAAATGTTATCGCTGGACGTTCTGCTCCTGTGCGCAATCTCAGGGTT
CCAATTGCTAATCTCTGCAGATGGAGATCCCATGATTGAGGTCTTCAAGT
GGAAGCAGTTGGACTTTTACAATCGCGGCGATGGCTATAAGGATTTGTGG
AACAGGATCTGCATTCCAGATTCGCATTTCTACAACTCCCGCAAGTGCTT
AGGCTCCTCATCCTCAGGATCCTTCATCCAATACAACAACGTGCCCCAAG
GAGTAACCCACTTTCGAGGACGCCTCTTTGTCACCGTGCCACGGCGACAG
CCGGGCATTCCGTCCACCTTAAACTACATCGATCTGGCCAAGGATGGGTG
GAGTCAGAGTCCCCATCTACGGGCCTATCCCAACTTGGCGGTGAATCAGT
ATAATGCGAGCGAGCAGAACCTAGTGTCTGTCTATAGAACCTCAGTGGAT
GTCTGTGGGCGTCTCTGGTTCGTCGACACCGGAATGCTGGAGTTTCCCAA
TAATCGCCAGCAGATTCGACATCCTAGCATTTGGGTGATCGATTTGGCTA
ACGATCGCTTATTGAAACGATTTGAGATTCCGCAGAGCATAGTGGAGATC
GGACGTGGACTAGCCAGCATCACAATCGATGTGGGCGCTCGGAGGTGCAA
CGATGCCTATGCCTACATTCCGGATTTGGTCAATCGCAGACTGCACGTCT
ATCACCTGCGAAGCGATAGAATTTGGTCCTTCGAGCACAGCTTCTTTAAC
TTTGATCCCCTTTCTGATAATCTCAACATTGGTGGGCAGACCTTCCGCTG
GGACGACGGGATTTTCTCGGCGACCTTGGGATCATATAAGCCCGATGGCA
GCAGGGATGTCTTCTTCCATCCTATGGCCAGCACGAATGAGTTTGTGGTT
AGCAACAGGGTCTTGCAGCAGGAATTCAATGCAGCACGTTCTGATCATGG
AGACGACTTCCATCTTCTGGGAACTCGTGGTCCGTCCACCCAGTCCACAA
TGCATAAATACGATCCGCGGACCGGGGTGATTTTCTTTGCCGAGGTCCAG
AAGAGTGGAGTGGGCTGCTGGAAAACCAGCAAGCCGTTCTCAACGGAAAA
CCATGGCTCCGTTTATTCCAATTCATCGGAGATGATTTATCCCAGCGATT
TGACCATCGACGAGGAGGGATACATTTGGGTGATGTCCAACTCCATGCCC
ATCTTTGTGTACTCCAAGCTGGATGTGGAGAAGTACAATTTCCGAATCTG
GAGGCAGTCGACATTGCTGGCCAAGAGGGGAACAGTTTGTGAGTGATTTG
CGTGGAATTGCTTTAATGAATTTTTCGCATAAGTAATATGTTTATCGAAA
TAACACACGGAAACTTATTAATAAAATAAATCAAAAAGCAAAAAAAAAAA
AAAAAAA

GH16592.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-RA 1506 yellow-f-RA 54..1493 1..1440 7200 100 Plus
yellow-f.a 1429 yellow-f.a 227..1416 251..1440 5950 100 Plus
yellow-f.b 1458 yellow-f.b 270..1445 265..1440 5880 100 Plus
yellow-f.a 1429 yellow-f.a 10..228 1..219 1095 100 Plus
yellow-f.b 1458 yellow-f.b 54..272 1..219 1095 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8816999..8817654 1205..550 3265 99.8 Minus
chr3R 27901430 chr3R 8817721..8818054 549..218 1605 99.4 Minus
chr3R 27901430 chr3R 8816704..8816937 1439..1206 1170 100 Minus
chr3R 27901430 chr3R 8818240..8818458 219..1 1095 100 Minus
chr3R 27901430 chr3R 8818924..8819576 1202..550 1045 77.3 Minus
chr3R 27901430 chr3R 8819687..8819952 547..282 490 78.9 Minus
chr3R 27901430 chr3R 8818700..8818850 1359..1209 305 80.1 Minus
chr3R 27901430 chr3R 8820234..8820330 185..89 230 82.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12991744..12992399 1205..550 3280 100 Minus
3R 32079331 3R 12992466..12992797 549..218 1660 100 Minus
3R 32079331 3R 12991448..12991682 1440..1206 1175 100 Minus
3R 32079331 3R 12992983..12993201 219..1 1095 100 Minus
3R 32079331 3R 12993667..12994319 1202..550 1030 77.2 Minus
3R 32079331 3R 12994430..12994695 547..282 505 79.3 Minus
3R 32079331 3R 12993443..12993593 1359..1209 305 80.1 Minus
3R 32079331 3R 12994977..12995073 185..89 245 83.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12732575..12733230 1205..550 3280 100 Minus
3R 31820162 3R 12733297..12733628 549..218 1660 100 Minus
3R 31820162 3R 12732279..12732513 1440..1206 1175 100 Minus
3R 31820162 3R 12733814..12734032 219..1 1095 100 Minus
3R 31820162 3R 12734498..12734806 1202..894 630 80.2 Minus
3R 31820162 3R 12735261..12735526 547..282 505 79.3 Minus
3R 31820162 3R 12734832..12734999 868..701 420 83.3 Minus
3R 31820162 3R 12735808..12735904 185..89 245 83.5 Minus
3R 31820162 3R 12734274..12734349 1359..1284 200 84.2 Minus
3R 31820162 3R 12734360..12734424 1273..1209 175 84.6 Minus
Blast to na_te.dros performed on 2019-03-15 15:40:23 has no hits.

GH16592.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:41:22 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8816704..8816937 1206..1439 100 <- Minus
chr3R 8816999..8817654 550..1205 99 <- Minus
chr3R 8817721..8818052 220..549 99 <- Minus
chr3R 8818240..8818458 1..219 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:45:58 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 1..1290 57..1346 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:02:19 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 1..1290 57..1346 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:36:12 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 1..1290 57..1346 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:42 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 1..1290 57..1346 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:12:34 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 1..1290 57..1346 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:20:24 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 1..1439 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:02:19 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 1..1439 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:36:12 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 1..1439 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:42 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 1..1439 1..1439 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:12:34 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 1..1439 1..1439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:22 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12991449..12991682 1206..1439 100 <- Minus
3R 12991744..12992399 550..1205 100 <- Minus
3R 12992466..12992795 220..549 100 <- Minus
3R 12992983..12993201 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:22 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12991449..12991682 1206..1439 100 <- Minus
3R 12991744..12992399 550..1205 100 <- Minus
3R 12992466..12992795 220..549 100 <- Minus
3R 12992983..12993201 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:41:22 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12991449..12991682 1206..1439 100 <- Minus
3R 12991744..12992399 550..1205 100 <- Minus
3R 12992466..12992795 220..549 100 <- Minus
3R 12992983..12993201 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:36:12 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8817171..8817404 1206..1439 100 <- Minus
arm_3R 8817466..8818121 550..1205 100 <- Minus
arm_3R 8818188..8818517 220..549 100 <- Minus
arm_3R 8818705..8818923 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:44 Download gff for GH16592.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12732280..12732513 1206..1439 100 <- Minus
3R 12732575..12733230 550..1205 100 <- Minus
3R 12733297..12733626 220..549 100 <- Minus
3R 12733814..12734032 1..219 100   Minus

GH16592.hyp Sequence

Translation from 2 to 1345

> GH16592.hyp
SVTSGFSARKGERPEFYKMLSLDVLLLCAISGFQLLISADGDPMIEVFKW
KQLDFYNRGDGYKDLWNRICIPDSHFYNSRKCLGSSSSGSFIQYNNVPQG
VTHFRGRLFVTVPRRQPGIPSTLNYIDLAKDGWSQSPHLRAYPNLAVNQY
NASEQNLVSVYRTSVDVCGRLWFVDTGMLEFPNNRQQIRHPSIWVIDLAN
DRLLKRFEIPQSIVEIGRGLASITIDVGARRCNDAYAYIPDLVNRRLHVY
HLRSDRIWSFEHSFFNFDPLSDNLNIGGQTFRWDDGIFSATLGSYKPDGS
RDVFFHPMASTNEFVVSNRVLQQEFNAARSDHGDDFHLLGTRGPSTQSTM
HKYDPRTGVIFFAEVQKSGVGCWKTSKPFSTENHGSVYSNSSEMIYPSDL
TIDEEGYIWVMSNSMPIFVYSKLDVEKYNFRIWRQSTLLAKRGTVCE*

GH16592.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-PA 429 CG18550-PA 1..429 19..447 2305 100 Plus
yellow-f-PB 418 CG18550-PB 1..418 19..447 2219 97.4 Plus
yellow-f-PC 413 CG18550-PC 1..413 19..447 2192 96.3 Plus
yellow-f2-PA 452 CG8063-PA 1..452 19..447 1666 69.5 Plus
yellow-c-PB 438 CG4182-PB 6..437 19..447 792 37.6 Plus

GH16592.pep Sequence

Translation from 56 to 1345

> GH16592.pep
MLSLDVLLLCAISGFQLLISADGDPMIEVFKWKQLDFYNRGDGYKDLWNR
ICIPDSHFYNSRKCLGSSSSGSFIQYNNVPQGVTHFRGRLFVTVPRRQPG
IPSTLNYIDLAKDGWSQSPHLRAYPNLAVNQYNASEQNLVSVYRTSVDVC
GRLWFVDTGMLEFPNNRQQIRHPSIWVIDLANDRLLKRFEIPQSIVEIGR
GLASITIDVGARRCNDAYAYIPDLVNRRLHVYHLRSDRIWSFEHSFFNFD
PLSDNLNIGGQTFRWDDGIFSATLGSYKPDGSRDVFFHPMASTNEFVVSN
RVLQQEFNAARSDHGDDFHLLGTRGPSTQSTMHKYDPRTGVIFFAEVQKS
GVGCWKTSKPFSTENHGSVYSNSSEMIYPSDLTIDEEGYIWVMSNSMPIF
VYSKLDVEKYNFRIWRQSTLLAKRGTVCE*

GH16592.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18090-PA 452 GF18090-PA 1..452 1..429 1641 67.8 Plus
Dana\GF14904-PA 438 GF14904-PA 11..437 7..429 789 36.1 Plus
Dana\y-PA 546 GF21448-PA 29..408 28..429 634 35.6 Plus
Dana\GF15359-PA 453 GF15359-PA 48..403 71..429 601 33.7 Plus
Dana\GF11858-PA 411 GF11858-PA 72..410 90..428 347 26.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17086-PA 432 GG17086-PA 1..432 1..429 2127 91.2 Plus
Dere\GG17085-PA 452 GG17085-PA 1..452 1..429 1655 69.9 Plus
Dere\GG25141-PA 434 GG25141-PA 6..433 1..429 787 36.8 Plus
Dere\y-PA 541 GG12780-PA 27..406 28..429 637 35.4 Plus
Dere\GG22769-PA 453 GG22769-PA 48..403 71..429 611 35.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19199-PA 446 GH19199-PA 21..446 20..429 1431 62.9 Plus
Dgri\GH10914-PA 435 GH10914-PA 26..434 28..429 761 36.3 Plus
Dgri\GH11563-PA 464 GH11563-PA 17..403 19..429 614 32.6 Plus
Dgri\GH24338-PA 546 GH24338-PA 6..404 4..429 614 33.6 Plus
Dgri\GH23996-PA 455 GH23996-PA 71..432 70..428 523 35.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-PA 429 CG18550-PA 1..429 1..429 2305 100 Plus
yellow-f-PB 418 CG18550-PB 1..418 1..429 2219 97.4 Plus
yellow-f-PC 413 CG18550-PC 1..413 1..429 2192 96.3 Plus
yellow-f2-PA 452 CG8063-PA 1..452 1..429 1666 69.5 Plus
yellow-c-PB 438 CG4182-PB 6..437 1..429 792 37.6 Plus
yellow-c-PA 438 CG4182-PA 6..437 1..429 792 37.6 Plus
y-PA 541 CG3757-PA 27..406 28..429 633 35.4 Plus
yellow-b-PB 453 CG17914-PB 6..403 4..429 616 31.9 Plus
yellow-b-PA 453 CG17914-PA 6..403 4..429 616 31.9 Plus
yellow-h-PA 463 CG1629-PA 56..440 29..428 573 33.8 Plus
yellow-d2-PA 412 CG9891-PA 73..397 90..414 326 26.8 Plus
yellow-d-PA 432 CG9889-PA 74..408 80..417 308 26.8 Plus
yellow-e2-PB 435 CG17044-PB 91..422 89..416 299 25.3 Plus
yellow-e-PA 530 CG9792-PA 44..387 53..416 297 26.7 Plus
yellow-e3-PA 409 CG17045-PA 57..393 87..422 264 27.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24232-PA 417 GI24232-PA 48..417 61..429 1401 67.8 Plus
Dmoj\GI13248-PA 432 GI13248-PA 1..431 1..429 818 37.6 Plus
Dmoj\GI17054-PA 454 GI17054-PA 10..402 7..429 608 33.5 Plus
Dmoj\GI21724-PA 543 GI21724-PA 30..411 26..429 606 34.5 Plus
Dmoj\GI11002-PA 470 GI11002-PA 81..446 70..428 576 35.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23151-PA 436 GL23151-PA 1..436 26..429 1572 67 Plus
Dper\GL26025-PA 438 GL26025-PA 11..437 7..429 784 36.4 Plus
Dper\GL18784-PA 454 GL18784-PA 25..403 29..429 661 35.1 Plus
Dper\GL20376-PA 482 GL20376-PA 36..415 28..429 638 35.6 Plus
Dper\GL18156-PA 466 GL18156-PA 80..443 70..428 593 35.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27163-PA 460 GA27163-PA 6..460 7..429 1590 66.6 Plus
Dpse\GA18010-PA 438 GA18010-PA 11..437 7..429 784 36.4 Plus
Dpse\GA14722-PA 454 GA14722-PA 25..403 29..429 658 34.9 Plus
Dpse\y-PA 560 GA17665-PA 17..415 7..429 632 34.6 Plus
Dpse\GA27858-PA 427 GA27858-PA 41..404 70..428 596 35.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25969-PA 434 GM25969-PA 1..434 1..429 2174 93.1 Plus
Dsec\GM25968-PA 452 GM25968-PA 1..452 1..429 1623 68.6 Plus
Dsec\GM15882-PA 438 GM15882-PA 11..437 7..429 802 37 Plus
Dsec\GM17203-PA 453 GM17203-PA 25..403 29..429 616 32.2 Plus
Dsec\y-PA 426 GM19059-PA 25..309 26..331 466 35.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20529-PA 429 GD20529-PA 1..429 1..429 2154 93.7 Plus
Dsim\GD20528-PA 452 GD20528-PA 21..452 21..429 1626 69.9 Plus
Dsim\GD23989-PA 438 GD23989-PA 6..437 1..429 804 37.2 Plus
Dsim\GD24079-PA 453 GD24079-PA 25..403 29..429 621 32.4 Plus
Dsim\y-PA 406 GD24705-PA 25..309 26..331 467 35.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10805-PA 452 GJ10805-PA 1..452 2..429 1506 62 Plus
Dvir\GJ11869-PA 435 GJ11869-PA 46..434 67..429 777 38.4 Plus
Dvir\GJ17304-PA 466 GJ17304-PA 12..405 6..429 620 32.1 Plus
Dvir\y-PA 541 GJ15591-PA 27..408 26..429 604 34.7 Plus
Dvir\GJ14923-PA 455 GJ14923-PA 67..432 70..428 542 33.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12212-PA 404 GK12212-PA 1..404 26..429 1456 66.3 Plus
Dwil\GK10856-PA 453 GK10856-PA 4..453 6..429 1370 57.3 Plus
Dwil\GK18310-PA 436 GK18310-PA 47..435 67..429 804 39.6 Plus
Dwil\GK25268-PA 545 GK25268-PA 29..410 26..429 619 34.7 Plus
Dwil\GK18231-PA 415 GK18231-PA 1..391 7..416 579 31.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24475-PA 434 GE24475-PA 1..434 1..429 2118 90.6 Plus
Dyak\GE24474-PA 452 GE24474-PA 1..452 1..429 1661 68.6 Plus
Dyak\GE20803-PA 438 GE20803-PA 6..437 1..429 781 35.9 Plus
Dyak\y-PA 541 GE16608-PA 27..406 28..429 644 35.6 Plus
Dyak\GE12764-PA 453 GE12764-PA 25..403 29..429 619 32.7 Plus