Clone GH16593 Report

Search the DGRC for GH16593

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:165
Well:93
Vector:pOT2
Associated Gene/TranscriptFibp-RB
Protein status:GH16593.pep: gold
Preliminary Size:1222
Sequenced Size:1130

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8660 2001-01-01 Release 2 assignment
CG8660 2001-11-29 Blastp of sequenced clone
CG8660 2003-01-01 Sim4 clustering to Release 3
Fibp 2008-04-29 Release 5.5 accounting
Fibp 2008-08-15 Release 5.9 accounting
Fibp 2008-12-18 5.12 accounting

Clone Sequence Records

GH16593.complete Sequence

1130 bp (1130 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069147

> GH16593.complete
GCCGATGTGGATGTGTTTATAAGTAATTATACAATCATCGATCCAGAAAT
TTACCAGCTATGGATCGAAGGCTTCTCCTCCAGCGAGGCGGTGTCCTATC
TGAAACAGAAGGGTTTTGGTCACTCCATGGGCGCTCCCAGCGACCTGATT
GCATCGGATGTACTGGATCATTACCGCACCTATTCCCTGATTGAACTATA
CCTAAACGCACCCACCAAACTGATGGAGCAATCCTGCTTCCAGCTGGAGC
CACAAATGCGTGACCTTATCACCGAGAAGTACTATTCCATCGATGATGTG
GTGGCTCGCGAAATTCTTGGCAAGAAGCTGTCGTCCCGCTACCGCAAGGA
CCTCGACGAGGTGGCCGAGAAGACGTGCGTCAAGCTAAAATCAGTTCGCC
GACAATTTGACAACGTAAAACGCATTTTTAAGGCAGTCGAGGAAATGCCG
GGCACGTTAACCAACAACATCAAGCAACACTTCATCATATCCACCGATCT
AGCCAAAAAGTACGCCTGCATTGTTTTCCTGGCCTGCCTGCGTTTCGAAA
CCACCAAAAAAAAGTTGCAATACCTGAGCTTCAGTGATTTGTTGACCTGC
TCCCATGCCATCATGATCTACTGGACGTATACTTACCAGCACACTGGACC
GGAGTACTATGATACCGAAATGGACAAAGAGTTTCTCTTGGACCTGCGGG
AGTTGCGCTGTCTACTCGACAAGGAAAAGGAGATTAAGCACCTCGTCTGC
ATGCGCCTCAAACCCGTTCTTCTCGAGCGCGCCTTTCACGAACTGGATGG
CAACTTTCGTTCTTACTGGCGCGCCCTGATCACCATCGCCTGCAATTTGC
ATCGCAATCGGGAGCTGCGCGATCTTTTCGTCGATCTCTGTGAGAAGCTT
ATTGATCCTTGGCGTCAGAATGGCTGGAACCGTGAGCAAGTGAATAAATT
TTTGGCTTCCATAACGCAAAGCGTTTTGGATCTGGAAATATCAAGGGACC
AAGAAACCAGATGTCTTTGGGATCGCTATATGCAGGTCATAACGATATGC
TTGGATAAAATGTATCACATTTAAGATGTGATTAAACTAAGGATCAAATA
TAAATAGTATTTAAAAAAAAAAAAAAAAAA

GH16593.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Fibp-RB 1465 Fibp-RB 273..1386 1..1114 5570 100 Plus
Fibp-RD 1410 Fibp-RD 219..1332 1..1114 5570 100 Plus
Fibp-RC 1505 Fibp-RC 419..1453 80..1114 5175 100 Plus
Fibp-RC 1505 Fibp-RC 273..351 1..79 395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19806601..19806919 398..80 1595 100 Minus
chr3L 24539361 chr3L 19805715..19805902 996..809 940 100 Minus
chr3L 24539361 chr3L 19806241..19806373 639..507 665 100 Minus
chr3L 24539361 chr3L 19805535..19805653 1112..994 595 100 Minus
chr3L 24539361 chr3L 19806430..19806538 506..398 545 100 Minus
chr3L 24539361 chr3L 19806090..19806193 740..637 520 100 Minus
chr3L 24539361 chr3L 19806987..19807065 79..1 395 100 Minus
chr3L 24539361 chr3L 19805963..19806031 809..741 345 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19817231..19817549 398..80 1595 100 Minus
3L 28110227 3L 19816345..19816532 996..809 940 100 Minus
3L 28110227 3L 19816871..19817003 639..507 665 100 Minus
3L 28110227 3L 19816163..19816283 1114..994 605 100 Minus
3L 28110227 3L 19817060..19817168 506..398 545 100 Minus
3L 28110227 3L 19816720..19816823 740..637 520 100 Minus
3L 28110227 3L 19817617..19817695 79..1 395 100 Minus
3L 28110227 3L 19816593..19816661 809..741 345 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19810331..19810649 398..80 1595 100 Minus
3L 28103327 3L 19809445..19809632 996..809 940 100 Minus
3L 28103327 3L 19809971..19810103 639..507 665 100 Minus
3L 28103327 3L 19809263..19809383 1114..994 605 100 Minus
3L 28103327 3L 19810160..19810268 506..398 545 100 Minus
3L 28103327 3L 19809820..19809923 740..637 520 100 Minus
3L 28103327 3L 19810717..19810795 79..1 395 100 Minus
3L 28103327 3L 19809693..19809761 809..741 345 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:41:23 has no hits.

GH16593.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:42:30 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19805716..19805901 810..995 100 <- Minus
chr3L 19805963..19806031 741..809 100 <- Minus
chr3L 19806090..19806190 640..740 100 <- Minus
chr3L 19806241..19806373 507..639 100 <- Minus
chr3L 19806430..19806537 399..506 100 <- Minus
chr3L 19806601..19806919 80..398 100 <- Minus
chr3L 19806987..19807065 1..79 100   Minus
chr3L 19805535..19805651 996..1112 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:00 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
Fibp-RD 121..1194 1..1074 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:25:26 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
Fibp-RD 121..1194 1..1074 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:08:04 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
Fibp-RC 1..948 127..1074 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:52:36 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
Fibp-RD 121..1194 1..1074 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:53 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
Fibp-RC 1..948 127..1074 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:01:20 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
Fibp-RB 273..1384 1..1112 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:25:26 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
Fibp-RB 273..1384 1..1112 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:08:04 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
Fibp-RB 96..1207 1..1112 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:52:36 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
Fibp-RB 273..1384 1..1112 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:53 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
Fibp-RB 96..1207 1..1112 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:30 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19817617..19817695 1..79 100   Minus
3L 19817231..19817549 80..398 100 <- Minus
3L 19816165..19816281 996..1112 100 <- Minus
3L 19816346..19816531 810..995 100 <- Minus
3L 19816593..19816661 741..809 100 <- Minus
3L 19816720..19816820 640..740 100 <- Minus
3L 19816871..19817003 507..639 100 <- Minus
3L 19817060..19817167 399..506 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:30 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19817617..19817695 1..79 100   Minus
3L 19817231..19817549 80..398 100 <- Minus
3L 19816165..19816281 996..1112 100 <- Minus
3L 19816346..19816531 810..995 100 <- Minus
3L 19816593..19816661 741..809 100 <- Minus
3L 19816720..19816820 640..740 100 <- Minus
3L 19816871..19817003 507..639 100 <- Minus
3L 19817060..19817167 399..506 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:30 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19817617..19817695 1..79 100   Minus
3L 19817231..19817549 80..398 100 <- Minus
3L 19816165..19816281 996..1112 100 <- Minus
3L 19816346..19816531 810..995 100 <- Minus
3L 19816593..19816661 741..809 100 <- Minus
3L 19816720..19816820 640..740 100 <- Minus
3L 19816871..19817003 507..639 100 <- Minus
3L 19817060..19817167 399..506 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:08:04 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19809265..19809381 996..1112 100 <- Minus
arm_3L 19809446..19809631 810..995 100 <- Minus
arm_3L 19809693..19809761 741..809 100 <- Minus
arm_3L 19809820..19809920 640..740 100 <- Minus
arm_3L 19809971..19810103 507..639 100 <- Minus
arm_3L 19810160..19810267 399..506 100 <- Minus
arm_3L 19810331..19810649 80..398 100 <- Minus
arm_3L 19810717..19810795 1..79 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:46 Download gff for GH16593.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19810331..19810649 80..398 100 <- Minus
3L 19810717..19810795 1..79 100   Minus
3L 19809265..19809381 996..1112 100 <- Minus
3L 19809446..19809631 810..995 100 <- Minus
3L 19809693..19809761 741..809 100 <- Minus
3L 19809820..19809920 640..740 100 <- Minus
3L 19809971..19810103 507..639 100 <- Minus
3L 19810160..19810267 399..506 100 <- Minus

GH16593.hyp Sequence

Translation from 0 to 1073

> GH16593.hyp
ADVDVFISNYTIIDPEIYQLWIEGFSSSEAVSYLKQKGFGHSMGAPSDLI
ASDVLDHYRTYSLIELYLNAPTKLMEQSCFQLEPQMRDLITEKYYSIDDV
VAREILGKKLSSRYRKDLDEVAEKTCVKLKSVRRQFDNVKRIFKAVEEMP
GTLTNNIKQHFIISTDLAKKYACIVFLACLRFETTKKKLQYLSFSDLLTC
SHAIMIYWTYTYQHTGPEYYDTEMDKEFLLDLRELRCLLDKEKEIKHLVC
MRLKPVLLERAFHELDGNFRSYWRALITIACNLHRNRELRDLFVDLCEKL
IDPWRQNGWNREQVNKFLASITQSVLDLEISRDQETRCLWDRYMQVITIC
LDKMYHI*

GH16593.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Fibp-PF 315 CG8660-PF 1..315 43..357 1662 100 Plus
Fibp-PE 315 CG8660-PE 1..315 43..357 1662 100 Plus
Fibp-PC 315 CG8660-PC 1..315 43..357 1662 100 Plus
Fibp-PB 315 CG8660-PB 1..315 43..357 1662 100 Plus
Fibp-PG 208 CG8660-PG 1..205 43..247 1067 100 Plus

GH16593.pep Sequence

Translation from 126 to 1073

> GH16593.pep
MGAPSDLIASDVLDHYRTYSLIELYLNAPTKLMEQSCFQLEPQMRDLITE
KYYSIDDVVAREILGKKLSSRYRKDLDEVAEKTCVKLKSVRRQFDNVKRI
FKAVEEMPGTLTNNIKQHFIISTDLAKKYACIVFLACLRFETTKKKLQYL
SFSDLLTCSHAIMIYWTYTYQHTGPEYYDTEMDKEFLLDLRELRCLLDKE
KEIKHLVCMRLKPVLLERAFHELDGNFRSYWRALITIACNLHRNRELRDL
FVDLCEKLIDPWRQNGWNREQVNKFLASITQSVLDLEISRDQETRCLWDR
YMQVITICLDKMYHI*

GH16593.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10845-PA 357 GF10845-PA 43..357 1..315 1649 98.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13367-PA 315 GG13367-PA 1..315 1..315 1663 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16910-PA 362 GH16910-PA 48..362 1..315 1579 93 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Fibp-PF 315 CG8660-PF 1..315 1..315 1662 100 Plus
Fibp-PE 315 CG8660-PE 1..315 1..315 1662 100 Plus
Fibp-PC 315 CG8660-PC 1..315 1..315 1662 100 Plus
Fibp-PB 315 CG8660-PB 1..315 1..315 1662 100 Plus
Fibp-PG 208 CG8660-PG 1..205 1..205 1067 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13666-PA 357 GI13666-PA 43..357 1..315 1559 91.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15677-PA 368 GL15677-PA 54..368 1..315 1635 96.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23500-PA 368 GA23500-PA 54..368 1..315 1635 96.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16090-PA 358 GM16090-PA 44..358 1..315 1664 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12246-PA 358 GD12246-PA 44..358 1..315 1670 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14001-PA 357 GJ14001-PA 43..357 1..315 1578 93.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17216-PA 357 GK17216-PA 43..357 1..315 1581 94.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22461-PA 383 GE22461-PA 69..383 1..315 1670 99.4 Plus