Clone GH16625 Report

Search the DGRC for GH16625

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:166
Well:25
Vector:pOT2
Associated Gene/Transcript312-RA
Protein status:GH16625.pep: gold
Preliminary Size:1645
Sequenced Size:1603

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9166 2001-01-01 Release 2 assignment
CG9166 2001-07-04 Blastp of sequenced clone
CG9166 2003-01-01 Sim4 clustering to Release 3
312 2008-04-29 Release 5.5 accounting
312 2008-08-15 Release 5.9 accounting
312 2008-12-18 5.12 accounting

Clone Sequence Records

GH16625.complete Sequence

1603 bp (1603 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060311

> GH16625.complete
AATTTATTAATAACAACAGAAAGAAGCCAAAGCAAAATGCTGACCCGCGT
GTTCCGCCTAGTGCACGACAGGCGCCTGAGTGTGCCTGTCCTGCGTTGCT
TCCACCACGAGTTCTCCAAGCCGCCACAACAGGCAGCGAAGGGCCAGGAA
ATCGAAGGCAATCCCGAAAAGACTTTGGTTGCCGGCGTGCAAGACAAGTA
CAAAATATTCCGCGATGAGGAAGCCACGGAGATTTTTGATGTGGAAGAGG
CACGCCACCAGGAGCAGCAACTTCCAGAGCCGGACCTGGAGCTGGATCAC
TATTACGGCCTCAATTTAAAGCGAGGTGTTCGCGGAGTGTTCGACGTTGA
GGACTTGGTGGAGCTGCTCCGCAAGGAGAATGTGGACGACATATTCGTCT
GCTACGTGCCGGAGAACCTGAAGTACGTTGACCACCTGGTGGTTTGCAGT
GGTCGCAGTTACCGACACATGCTGTCCACCGCGGAGTTCGTGCGCCGAAT
GTTCAAGATCAAGCGGGGCAAGGGTGACATATTGCCGCGCATCGAGGGCG
ATAAGAGCCGGGATTGGATGGCCATGGACTTGGGCAACATTGCCCTGCAC
ATATTTTCACCGAGTGCTCGCGAGGAATACGATCTGGAGTCGCTGTGGGC
CATTGGCTCCGAATTCGACCGCGAAAGCCAAAAACCCACCAATCCCTATG
GCGATATTTTCATGGCTCAAACACCCCTTTCTTTCGTAGACAAATCGAAA
CTAAAGACGTAAAATAATACATTTCACTATTAATAAAAAAAAACTCTTTA
GAGCTGCGTACGTGCGAGATCACTTGCAGTGTGATTTGGAAAAACAATAA
GGTATGAATAAATATTTCGTGTCAGACTTGTTATTCTCGTGTCACGGCCA
AAATAACTATGCGATCGCCCATCTCTAGTTTCTTACTGGGTGCATTCGCT
CAGGCAGCCATCTTTAAAATAACTGTAATTTTTATTAACATCGAGCTCTA
ATAGGGCAATAATAGCCATAATCCGTCAGAATATGACAGCAGTATTTCCA
AACAGGAGCTAAATTCTTTTGTAGATGGCCAAGCGACGCTAGCGCCACCT
ATTTCTGAAAATCTGATAATAACAAGTGCGCACTAAAGTATACTGCAAAA
AATGAAAATAACTCTTCTTTTCAGAGAATAAAGGCAGATTCCCTTATATC
TATGAAATGTCACAATCAAATTGTTATATATTTGATATGTGATGTATTTT
AATTTGTCTTTATCGAATATTGTCGGTATATCTGGTTGTAGCAACGCGTC
GGAACATTTTCTCCATTCAACTGGAAGATGCAACAATAGACAGTTAATCC
TGTAATTTAGGGTTTTAATAACTTTAAGAAGCCGTACAGTTTGATAGATA
ACAAATTGTAATAAAAACGCAAAATAATATATTATGAACCAGAAAGCATT
CCAATGATTTTATACTTCACAATCGAATTTCCCATTCATTCAGAGAAAGC
CATTAAACTCAAATCTCAATGGCTCGAATATATCCTGCGGCGTTTTTTAA
CGACTGTTTGCTCAAAATATAAATACGCCCACTCAAAAAAAAAAAAAAAA
AAA

GH16625.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
312-RA 1675 312-RA 92..1675 1..1584 7920 100 Plus
312.a 1336 312.a 76..926 1..851 4255 100 Plus
312.a 1336 312.a 925..1336 1173..1584 2060 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1351376..1352379 583..1584 4510 97.5 Plus
chr3L 24539361 chr3L 1350674..1350996 1..323 1600 99.7 Plus
chr3L 24539361 chr3L 1351053..1351314 323..584 1265 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1351852..1352855 583..1586 5020 100 Plus
3L 28110227 3L 1351150..1351472 1..323 1615 100 Plus
3L 28110227 3L 1351529..1351790 323..584 1310 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1351852..1352855 583..1586 5020 100 Plus
3L 28103327 3L 1351150..1351472 1..323 1615 100 Plus
3L 28103327 3L 1351529..1351790 323..584 1310 100 Plus
Blast to na_te.dros performed 2019-03-16 08:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3767..3894 1338..1206 147 65 Minus

GH16625.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:04:04 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1350674..1350995 1..322 99 -> Plus
chr3L 1351053..1351313 323..583 98 -> Plus
chr3L 1351377..1352379 584..1584 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:03 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 1..726 37..762 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:05 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 1..726 37..762 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:12:27 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 1..726 37..762 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:59:09 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 1..726 37..762 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:34:16 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 1..726 37..762 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:54 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 12..1595 1..1584 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:05 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 12..1595 1..1584 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:27 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 35..1618 1..1584 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:59:10 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 12..1595 1..1584 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:34:16 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 35..1618 1..1584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:04:04 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1351150..1351471 1..322 100 -> Plus
3L 1351529..1351789 323..583 100 -> Plus
3L 1351853..1352853 584..1584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:04:04 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1351150..1351471 1..322 100 -> Plus
3L 1351529..1351789 323..583 100 -> Plus
3L 1351853..1352853 584..1584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:04:04 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1351150..1351471 1..322 100 -> Plus
3L 1351529..1351789 323..583 100 -> Plus
3L 1351853..1352853 584..1584 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:27 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1351150..1351471 1..322 100 -> Plus
arm_3L 1351529..1351789 323..583 100 -> Plus
arm_3L 1351853..1352853 584..1584 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:37:00 Download gff for GH16625.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1351150..1351471 1..322 100 -> Plus
3L 1351529..1351789 323..583 100 -> Plus
3L 1351853..1352853 584..1584 100   Plus

GH16625.hyp Sequence

Translation from 0 to 761

> GH16625.hyp
NLLITTERSQSKMLTRVFRLVHDRRLSVPVLRCFHHEFSKPPQQAAKGQE
IEGNPEKTLVAGVQDKYKIFRDEEATEIFDVEEARHQEQQLPEPDLELDH
YYGLNLKRGVRGVFDVEDLVELLRKENVDDIFVCYVPENLKYVDHLVVCS
GRSYRHMLSTAEFVRRMFKIKRGKGDILPRIEGDKSRDWMAMDLGNIALH
IFSPSAREEYDLESLWAIGSEFDRESQKPTNPYGDIFMAQTPLSFVDKSK
LKT*

GH16625.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
312-PB 241 CG9166-PB 1..241 13..253 1267 100 Plus
312-PA 241 CG9166-PA 1..241 13..253 1267 100 Plus

GH16625.pep Sequence

Translation from 36 to 761

> GH16625.pep
MLTRVFRLVHDRRLSVPVLRCFHHEFSKPPQQAAKGQEIEGNPEKTLVAG
VQDKYKIFRDEEATEIFDVEEARHQEQQLPEPDLELDHYYGLNLKRGVRG
VFDVEDLVELLRKENVDDIFVCYVPENLKYVDHLVVCSGRSYRHMLSTAE
FVRRMFKIKRGKGDILPRIEGDKSRDWMAMDLGNIALHIFSPSAREEYDL
ESLWAIGSEFDRESQKPTNPYGDIFMAQTPLSFVDKSKLKT*

GH16625.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24458-PA 242 GF24458-PA 2..232 1..230 1009 83.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14786-PA 241 GG14786-PA 1..241 1..241 1143 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14903-PA 230 GH14903-PA 4..227 3..228 923 76.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
312-PB 241 CG9166-PB 1..241 1..241 1267 100 Plus
312-PA 241 CG9166-PA 1..241 1..241 1267 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12878-PA 233 GI12878-PA 4..229 3..230 938 77.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20701-PA 238 GL20701-PA 43..221 53..230 843 87.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21588-PA 245 GA21588-PA 2..243 1..241 1049 79.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14405-PA 241 GM14405-PA 1..241 1..241 1248 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13614-PA 223 GD13614-PA 1..223 1..241 1123 90.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13019-PA 235 GJ13019-PA 4..231 3..230 946 77.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17581-PA 236 GK17581-PA 5..234 4..229 933 77.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21149-PA 241 GE21149-PA 1..240 1..240 1154 89.6 Plus