BDGP Sequence Production Resources |
Search the DGRC for GH16672
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 166 |
Well: | 72 |
Vector: | pOT2 |
Associated Gene/Transcript | cry-RA |
Protein status: | GH16672.pep: gold |
Preliminary Size: | 1796 |
Sequenced Size: | 1856 |
Gene | Date | Evidence |
---|---|---|
CG3772 | 2001-01-01 | Release 2 assignment |
CG3772 | 2001-07-04 | Blastp of sequenced clone |
CG3772 | 2003-01-01 | Sim4 clustering to Release 3 |
cry | 2008-04-29 | Release 5.5 accounting |
cry | 2008-08-15 | Release 5.9 accounting |
cry | 2008-12-18 | 5.12 accounting |
1856 bp (1856 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051514
> GH16672.complete CGAATCGTGAGTGCGGAAAAAAGAAAATCTTTTCATCAGCTGGAAAACTG TTCTTCCCGATCAAAACTGGGATTCGGGAGATTTTTGAAGCCCAAAAGCA GGGAACTCCTCACTGATGGCCACGCGAGGGGCGAATGTGATTTGGTTTCG CCATGGATTGCGCCTCCATGATAATCCCGCTCTATTGGCCGCCCTCGCCG ATAAGGATCAGGGTATAGCCCTAATTCCCGTTTTCATATTCGATGGAGAG AGTGCAGGTACCAAGAATGTGGGTTACAATCGGATGCGTTTCCTCCTGGA CTCGTTGCAGGACATCGATGATCAGCTACAGGCGGCAACTGATGGACGTG GACGCCTCCTGGTCTTCGAGGGCGAACCGGCTTATATCTTCCGCCGGCTA CATGAGCAAGTGCGTCTGCACAGGATTTGCATAGAGCAGGACTGCGAGCC AATTTGGAATGAGCGCGATGAAAGCATCCGTTCTCTATGTCGGGAGCTGA ATATCGACTTTGTCGAGAAGGTATCACACACGCTTTGGGATCCGCAATTG GTGATTGAGACCAATGGTGGCATTCCACCGCTGACCTACCAAATGTTCCT GCACACGGTGCAAATTATTGGGCTTCCACCGCGTCCCACCGCCGATGCTC GACTAGAAGACGCCACCTTTGTCGAGCTGGACCCCGAGTTCTGCCGAAGT CTTAAGTTGTTCGAGCAGCTGCCCACGCCGGAGCACTTCAATGTGTATGG AGACAACATGGGCTTCCTGGCCAAGATTAACTGGCGCGGCGGAGAAACAC AGGCCTTACTTCTGTTGGATGAGCGTCTTAAAGTGGAGCAGCATGCGTTT GAGCGTGGATTTTATCTGCCCAACCAGGCACTGCCCAATATCCACGACTC GCCAAAATCGATGAGCGCCCATCTGCGCTTTGGTTGCCTTTCGGTACGTC GCTTCTACTGGAGCGTCCACGATCTCTTCAAGAATGTCCAGTTGCGCGCC TGTGTGCGGGGCGTTCAGATGACTGGCGGCGCGCACATCACGGGACAGTT GATCTGGCGAGAGTACTTCTACACCATGTCGGTGAACAATCCAAACTACG ATCGCATGGAGGGCAATGACATCTGCCTGAGCATCCCGTGGGCTAAGCCG AACGAAAATCTCCTGCAGAGCTGGCGTTTAGGCCAAACGGGATTCCCGCT CATCGACGGCGCCATGCGACAACTCCTGGCCGAGGGATGGCTCCACCATA CGCTGCGCAACACCGTGGCCACCTTTCTCACGCGCGGCGGTTTGTGGCAG AGCTGGGAGCATGGACTGCAGCACTTTCTGAAGTATCTGCTGGATGCGGA TTGGTCGGTCTGCGCTGGCAACTGGATGTGGGTATCCAGCTCGGCGTTTG AAAGGCTGCTGGACTCCTCCCTGGTCACCTGCCCGGTGGCATTGGCCAAG CGACTTGATCCGGATGGCACCTACATCAAGCAGTACGTCCCGGAGTTGAT GAATGTGCCCAAGGAATTTGTTCACGAGCCCTGGCGAATGTCTGCCGAGC AGCAGGAGCAGTACGAGTGCCTGATCGGAGTCCATTATCCGGAGCGGATC ATTGATTTGTCCATGGCCGTAAAGCGAAACATGCTGGCCATGAAGTCTCT CCGAAATTCGCTGATCACCCCGCCGCCGCATTGCCGACCATCCAACGAGG AGGAAGTGCGTCAGTTCTTCTGGCTGGCCGACGTGGTGGTTTGAAGGAGT ACAAGTGGGATGACCAATCCAATTTTAATTCGATTTCACAATAAAGAAAC TATTACCAGTGAAATATTATATATAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cry-RA | 2205 | cry-RA | 166..1991 | 1..1826 | 9130 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 15037919..15038839 | 601..1521 | 4605 | 100 | Plus |
chr3R | 27901430 | chr3R | 15037417..15037763 | 255..601 | 1735 | 100 | Plus |
chr3R | 27901430 | chr3R | 15039076..15039378 | 1522..1824 | 1515 | 100 | Plus |
chr3R | 27901430 | chr3R | 15036162..15036421 | 1..260 | 1300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 19213983..19214903 | 601..1521 | 4605 | 100 | Plus |
3R | 32079331 | 3R | 19213481..19213827 | 255..601 | 1735 | 100 | Plus |
3R | 32079331 | 3R | 19215140..19215444 | 1522..1826 | 1525 | 100 | Plus |
3R | 32079331 | 3R | 19212226..19212485 | 1..260 | 1300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 18954814..18955734 | 601..1521 | 4605 | 100 | Plus |
3R | 31820162 | 3R | 18954312..18954658 | 255..601 | 1735 | 100 | Plus |
3R | 31820162 | 3R | 18955971..18956275 | 1522..1826 | 1525 | 100 | Plus |
3R | 31820162 | 3R | 18953057..18953316 | 1..260 | 1300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 15036162..15036418 | 1..257 | 100 | -> | Plus |
chr3R | 15037420..15037763 | 258..601 | 100 | -> | Plus |
chr3R | 15037920..15038839 | 602..1521 | 100 | -> | Plus |
chr3R | 15039076..15039365 | 1522..1811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cry-RA | 1..1629 | 116..1744 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cry-RA | 1..1629 | 116..1744 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cry-RA | 1..1629 | 116..1744 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cry-RA | 1..1629 | 116..1744 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cry-RA | 1..1629 | 116..1744 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cry-RA | 34..1857 | 1..1824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cry-RA | 34..1857 | 1..1824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cry-RA | 34..1857 | 1..1824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cry-RA | 34..1857 | 1..1824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cry-RA | 73..1896 | 1..1824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19212226..19212482 | 1..257 | 100 | -> | Plus |
3R | 19213484..19213827 | 258..601 | 100 | -> | Plus |
3R | 19213984..19214903 | 602..1521 | 100 | -> | Plus |
3R | 19215140..19215442 | 1522..1824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19212226..19212482 | 1..257 | 100 | -> | Plus |
3R | 19213484..19213827 | 258..601 | 100 | -> | Plus |
3R | 19213984..19214903 | 602..1521 | 100 | -> | Plus |
3R | 19215140..19215442 | 1522..1824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19212226..19212482 | 1..257 | 100 | -> | Plus |
3R | 19213484..19213827 | 258..601 | 100 | -> | Plus |
3R | 19213984..19214903 | 602..1521 | 100 | -> | Plus |
3R | 19215140..19215442 | 1522..1824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 15037948..15038204 | 1..257 | 100 | -> | Plus |
arm_3R | 15039206..15039549 | 258..601 | 100 | -> | Plus |
arm_3R | 15039706..15040625 | 602..1521 | 100 | -> | Plus |
arm_3R | 15040862..15041164 | 1522..1824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18954815..18955734 | 602..1521 | 100 | -> | Plus |
3R | 18955971..18956273 | 1522..1824 | 100 | Plus | |
3R | 18953057..18953313 | 1..257 | 100 | -> | Plus |
3R | 18954315..18954658 | 258..601 | 100 | -> | Plus |
Translation from 115 to 1743
> GH16672.pep MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTK NVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVR LHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETN GGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFE QLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFY LPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGV QMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLL QSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPD GTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSM AVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLADVVV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16541-PA | 542 | GF16541-PA | 1..542 | 1..542 | 2615 | 86.9 | Plus |
Dana\GF14557-PA | 539 | GF14557-PA | 3..494 | 2..509 | 881 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23184-PA | 542 | GG23184-PA | 1..542 | 1..542 | 2788 | 94.8 | Plus |
Dere\GG21562-PA | 540 | GG21562-PA | 5..494 | 4..509 | 879 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17366-PA | 539 | GH17366-PA | 1..537 | 1..537 | 2422 | 82.3 | Plus |
Dgri\GH10854-PA | 538 | GH10854-PA | 3..488 | 2..509 | 861 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cry-PA | 542 | CG3772-PA | 1..542 | 1..542 | 2924 | 100 | Plus |
phr6-4-PD | 540 | CG2488-PD | 5..494 | 4..509 | 850 | 37.9 | Plus |
phr6-4-PC | 540 | CG2488-PC | 5..494 | 4..509 | 850 | 37.9 | Plus |
phr6-4-PB | 540 | CG2488-PB | 5..494 | 4..509 | 850 | 37.9 | Plus |
phr6-4-PA | 540 | CG2488-PA | 5..494 | 4..509 | 850 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23904-PA | 539 | GI23904-PA | 1..539 | 1..539 | 2500 | 84.2 | Plus |
Dmoj\GI19664-PA | 532 | GI19664-PA | 11..496 | 10..511 | 820 | 36.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12637-PA | 540 | GL12637-PA | 1..539 | 1..539 | 2539 | 85.3 | Plus |
Dper\GL19603-PA | 303 | GL19603-PA | 14..266 | 249..511 | 585 | 43 | Plus |
Dper\GL19602-PA | 204 | GL19602-PA | 3..172 | 2..171 | 282 | 37.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17677-PA | 540 | GA17677-PA | 1..539 | 1..539 | 2539 | 85.3 | Plus |
Dpse\GA15376-PA | 533 | GA15376-PA | 3..496 | 2..511 | 861 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26830-PA | 542 | GM26830-PA | 1..542 | 1..542 | 2887 | 98.5 | Plus |
Dsec\GM23319-PA | 540 | GM23319-PA | 3..494 | 2..509 | 865 | 38.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19278-PA | 542 | GD19278-PA | 1..542 | 1..542 | 2878 | 98.3 | Plus |
Dsim\GD21692-PA | 540 | GD21692-PA | 3..494 | 2..509 | 860 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24000-PA | 539 | GJ24000-PA | 1..539 | 1..539 | 2477 | 82.9 | Plus |
Dvir\GJ17431-PA | 541 | GJ17431-PA | 3..496 | 2..511 | 858 | 38.3 | Plus |
Translation from 115 to 1743
> GH16672.hyp MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTK NVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVR LHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETN GGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFE QLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFY LPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGV QMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLL QSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPD GTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSM AVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLADVVV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cry-PA | 542 | CG3772-PA | 1..542 | 1..542 | 2924 | 100 | Plus |
phr6-4-PD | 540 | CG2488-PD | 5..494 | 4..509 | 850 | 37.9 | Plus |
phr6-4-PC | 540 | CG2488-PC | 5..494 | 4..509 | 850 | 37.9 | Plus |
phr6-4-PB | 540 | CG2488-PB | 5..494 | 4..509 | 850 | 37.9 | Plus |
phr6-4-PA | 540 | CG2488-PA | 5..494 | 4..509 | 850 | 37.9 | Plus |