Clone GH16672 Report

Search the DGRC for GH16672

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:166
Well:72
Vector:pOT2
Associated Gene/Transcriptcry-RA
Protein status:GH16672.pep: gold
Preliminary Size:1796
Sequenced Size:1856

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3772 2001-01-01 Release 2 assignment
CG3772 2001-07-04 Blastp of sequenced clone
CG3772 2003-01-01 Sim4 clustering to Release 3
cry 2008-04-29 Release 5.5 accounting
cry 2008-08-15 Release 5.9 accounting
cry 2008-12-18 5.12 accounting

Clone Sequence Records

GH16672.complete Sequence

1856 bp (1856 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051514

> GH16672.complete
CGAATCGTGAGTGCGGAAAAAAGAAAATCTTTTCATCAGCTGGAAAACTG
TTCTTCCCGATCAAAACTGGGATTCGGGAGATTTTTGAAGCCCAAAAGCA
GGGAACTCCTCACTGATGGCCACGCGAGGGGCGAATGTGATTTGGTTTCG
CCATGGATTGCGCCTCCATGATAATCCCGCTCTATTGGCCGCCCTCGCCG
ATAAGGATCAGGGTATAGCCCTAATTCCCGTTTTCATATTCGATGGAGAG
AGTGCAGGTACCAAGAATGTGGGTTACAATCGGATGCGTTTCCTCCTGGA
CTCGTTGCAGGACATCGATGATCAGCTACAGGCGGCAACTGATGGACGTG
GACGCCTCCTGGTCTTCGAGGGCGAACCGGCTTATATCTTCCGCCGGCTA
CATGAGCAAGTGCGTCTGCACAGGATTTGCATAGAGCAGGACTGCGAGCC
AATTTGGAATGAGCGCGATGAAAGCATCCGTTCTCTATGTCGGGAGCTGA
ATATCGACTTTGTCGAGAAGGTATCACACACGCTTTGGGATCCGCAATTG
GTGATTGAGACCAATGGTGGCATTCCACCGCTGACCTACCAAATGTTCCT
GCACACGGTGCAAATTATTGGGCTTCCACCGCGTCCCACCGCCGATGCTC
GACTAGAAGACGCCACCTTTGTCGAGCTGGACCCCGAGTTCTGCCGAAGT
CTTAAGTTGTTCGAGCAGCTGCCCACGCCGGAGCACTTCAATGTGTATGG
AGACAACATGGGCTTCCTGGCCAAGATTAACTGGCGCGGCGGAGAAACAC
AGGCCTTACTTCTGTTGGATGAGCGTCTTAAAGTGGAGCAGCATGCGTTT
GAGCGTGGATTTTATCTGCCCAACCAGGCACTGCCCAATATCCACGACTC
GCCAAAATCGATGAGCGCCCATCTGCGCTTTGGTTGCCTTTCGGTACGTC
GCTTCTACTGGAGCGTCCACGATCTCTTCAAGAATGTCCAGTTGCGCGCC
TGTGTGCGGGGCGTTCAGATGACTGGCGGCGCGCACATCACGGGACAGTT
GATCTGGCGAGAGTACTTCTACACCATGTCGGTGAACAATCCAAACTACG
ATCGCATGGAGGGCAATGACATCTGCCTGAGCATCCCGTGGGCTAAGCCG
AACGAAAATCTCCTGCAGAGCTGGCGTTTAGGCCAAACGGGATTCCCGCT
CATCGACGGCGCCATGCGACAACTCCTGGCCGAGGGATGGCTCCACCATA
CGCTGCGCAACACCGTGGCCACCTTTCTCACGCGCGGCGGTTTGTGGCAG
AGCTGGGAGCATGGACTGCAGCACTTTCTGAAGTATCTGCTGGATGCGGA
TTGGTCGGTCTGCGCTGGCAACTGGATGTGGGTATCCAGCTCGGCGTTTG
AAAGGCTGCTGGACTCCTCCCTGGTCACCTGCCCGGTGGCATTGGCCAAG
CGACTTGATCCGGATGGCACCTACATCAAGCAGTACGTCCCGGAGTTGAT
GAATGTGCCCAAGGAATTTGTTCACGAGCCCTGGCGAATGTCTGCCGAGC
AGCAGGAGCAGTACGAGTGCCTGATCGGAGTCCATTATCCGGAGCGGATC
ATTGATTTGTCCATGGCCGTAAAGCGAAACATGCTGGCCATGAAGTCTCT
CCGAAATTCGCTGATCACCCCGCCGCCGCATTGCCGACCATCCAACGAGG
AGGAAGTGCGTCAGTTCTTCTGGCTGGCCGACGTGGTGGTTTGAAGGAGT
ACAAGTGGGATGACCAATCCAATTTTAATTCGATTTCACAATAAAGAAAC
TATTACCAGTGAAATATTATATATAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

GH16672.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
cry-RA 2205 cry-RA 166..1991 1..1826 9130 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15037919..15038839 601..1521 4605 100 Plus
chr3R 27901430 chr3R 15037417..15037763 255..601 1735 100 Plus
chr3R 27901430 chr3R 15039076..15039378 1522..1824 1515 100 Plus
chr3R 27901430 chr3R 15036162..15036421 1..260 1300 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:55:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19213983..19214903 601..1521 4605 100 Plus
3R 32079331 3R 19213481..19213827 255..601 1735 100 Plus
3R 32079331 3R 19215140..19215444 1522..1826 1525 100 Plus
3R 32079331 3R 19212226..19212485 1..260 1300 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18954814..18955734 601..1521 4605 100 Plus
3R 31820162 3R 18954312..18954658 255..601 1735 100 Plus
3R 31820162 3R 18955971..18956275 1522..1826 1525 100 Plus
3R 31820162 3R 18953057..18953316 1..260 1300 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:51:36 has no hits.

GH16672.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:52:46 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15036162..15036418 1..257 100 -> Plus
chr3R 15037420..15037763 258..601 100 -> Plus
chr3R 15037920..15038839 602..1521 100 -> Plus
chr3R 15039076..15039365 1522..1811 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:46:05 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 1..1629 116..1744 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:26:07 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 1..1629 116..1744 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:48:58 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 1..1629 116..1744 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:59:11 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 1..1629 116..1744 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:59 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 1..1629 116..1744 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:56 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 34..1857 1..1824 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:26:07 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 34..1857 1..1824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:58 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 34..1857 1..1824 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:59:11 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 34..1857 1..1824 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:59 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 73..1896 1..1824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:52:46 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19212226..19212482 1..257 100 -> Plus
3R 19213484..19213827 258..601 100 -> Plus
3R 19213984..19214903 602..1521 100 -> Plus
3R 19215140..19215442 1522..1824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:52:46 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19212226..19212482 1..257 100 -> Plus
3R 19213484..19213827 258..601 100 -> Plus
3R 19213984..19214903 602..1521 100 -> Plus
3R 19215140..19215442 1522..1824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:52:46 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19212226..19212482 1..257 100 -> Plus
3R 19213484..19213827 258..601 100 -> Plus
3R 19213984..19214903 602..1521 100 -> Plus
3R 19215140..19215442 1522..1824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:58 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15037948..15038204 1..257 100 -> Plus
arm_3R 15039206..15039549 258..601 100 -> Plus
arm_3R 15039706..15040625 602..1521 100 -> Plus
arm_3R 15040862..15041164 1522..1824 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:37:02 Download gff for GH16672.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18954815..18955734 602..1521 100 -> Plus
3R 18955971..18956273 1522..1824 100   Plus
3R 18953057..18953313 1..257 100 -> Plus
3R 18954315..18954658 258..601 100 -> Plus

GH16672.pep Sequence

Translation from 115 to 1743

> GH16672.pep
MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTK
NVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVR
LHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETN
GGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFE
QLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFY
LPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGV
QMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLL
QSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG
LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPD
GTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSM
AVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLADVVV*

GH16672.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16541-PA 542 GF16541-PA 1..542 1..542 2615 86.9 Plus
Dana\GF14557-PA 539 GF14557-PA 3..494 2..509 881 38.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23184-PA 542 GG23184-PA 1..542 1..542 2788 94.8 Plus
Dere\GG21562-PA 540 GG21562-PA 5..494 4..509 879 38.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17366-PA 539 GH17366-PA 1..537 1..537 2422 82.3 Plus
Dgri\GH10854-PA 538 GH10854-PA 3..488 2..509 861 38.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
cry-PA 542 CG3772-PA 1..542 1..542 2924 100 Plus
phr6-4-PD 540 CG2488-PD 5..494 4..509 850 37.9 Plus
phr6-4-PC 540 CG2488-PC 5..494 4..509 850 37.9 Plus
phr6-4-PB 540 CG2488-PB 5..494 4..509 850 37.9 Plus
phr6-4-PA 540 CG2488-PA 5..494 4..509 850 37.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23904-PA 539 GI23904-PA 1..539 1..539 2500 84.2 Plus
Dmoj\GI19664-PA 532 GI19664-PA 11..496 10..511 820 36.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12637-PA 540 GL12637-PA 1..539 1..539 2539 85.3 Plus
Dper\GL19603-PA 303 GL19603-PA 14..266 249..511 585 43 Plus
Dper\GL19602-PA 204 GL19602-PA 3..172 2..171 282 37.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17677-PA 540 GA17677-PA 1..539 1..539 2539 85.3 Plus
Dpse\GA15376-PA 533 GA15376-PA 3..496 2..511 861 38 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26830-PA 542 GM26830-PA 1..542 1..542 2887 98.5 Plus
Dsec\GM23319-PA 540 GM23319-PA 3..494 2..509 865 38.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19278-PA 542 GD19278-PA 1..542 1..542 2878 98.3 Plus
Dsim\GD21692-PA 540 GD21692-PA 3..494 2..509 860 38 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24000-PA 539 GJ24000-PA 1..539 1..539 2477 82.9 Plus
Dvir\GJ17431-PA 541 GJ17431-PA 3..496 2..511 858 38.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13802-PA 543 GK13802-PA 4..541 2..539 2445 82.2 Plus
Dwil\GK15094-PA 546 GK15094-PA 5..495 3..509 846 36.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25590-PA 542 GE25590-PA 1..542 1..542 2827 96.5 Plus
Dyak\GE12583-PA 540 GE12583-PA 3..494 2..509 883 38.6 Plus

GH16672.hyp Sequence

Translation from 115 to 1743

> GH16672.hyp
MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTK
NVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVR
LHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETN
GGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFE
QLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFY
LPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGV
QMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLL
QSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG
LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPD
GTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSM
AVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLADVVV*

GH16672.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
cry-PA 542 CG3772-PA 1..542 1..542 2924 100 Plus
phr6-4-PD 540 CG2488-PD 5..494 4..509 850 37.9 Plus
phr6-4-PC 540 CG2488-PC 5..494 4..509 850 37.9 Plus
phr6-4-PB 540 CG2488-PB 5..494 4..509 850 37.9 Plus
phr6-4-PA 540 CG2488-PA 5..494 4..509 850 37.9 Plus